Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0320800 Salix brachista HOM05D005664 ORTHO05D006509 0.0e+00 1448.0 735 100.0
Potri.001G472600 Populus trichocarpa HOM05D005664 ORTHO05D006509 0.0e+00 1264.2 716 90.1
Potri.011G169200 Populus trichocarpa HOM05D005664 ORTHO05D006509 0.0e+00 1077.0 719 79.8
Sabra11G0137600 Salix brachista HOM05D005664 ORTHO05D006509 6.3e-305 1050.4 719 78.4
Manes.01G007400 Manihot esculenta HOM05D005664 ORTHO05D006509 2.7e-223 779.2 718 61.3
Manes.01G007300 Manihot esculenta HOM05D005664 ORTHO05D006509 3.9e-214 748.8 719 59.7
Dinv40921 Davidia involucrata HOM05D005664 ORTHO05D006509 3.9e-182 642.5 730 53.0
Haze_09920 Corylus avellana HOM05D005664 ORTHO05D006509 4.5e-178 629.0 753 52.6
Atru.chr2.3903 Acer truncatum HOM05D005664 ORTHO05D006509 5.9e-178 628.6 725 52.8
Ciclev10007600m.g Citrus clementina HOM05D005664 ORTHO05D006509 7.7e-178 628.2 724 52.1
Cfa016966 Carpinus fangiana HOM05D005664 ORTHO05D006509 5.0e-177 625.5 731 53.2
QL08p000429 Quercus lobata HOM05D005664 ORTHO05D006509 2.1e-175 620.2 738 51.1
Dinv19639 Davidia involucrata HOM05D005664 ORTHO05D006509 2.8e-172 609.8 712 51.8
Thecc.07G000900 Theobroma cacao HOM05D005664 ORTHO05D006509 1.3e-169 600.9 751 51.1
Duzib170G1037 Durio zibethinus HOM05D005664 ORTHO05D006509 1.5e-160 570.9 749 49.0
CSS0015837 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 2.5e-160 570.1 739 49.3
Hma1.2p1_0193F.1_g084390 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 5.4e-155 552.4 739 48.2
CSS0022030 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 5.9e-154 548.9 788 46.4
Duzib268G0032 Durio zibethinus HOM05D005664 ORTHO05D006509 2.3e-153 547.0 748 48.4
CiPaw.12G143100 Carya illinoinensis HOM05D005664 ORTHO05D006509 1.5e-152 544.3 733 47.3
COL.COLO4_30921 Corchorus olitorius HOM05D005664 ORTHO05D006509 4.3e-152 542.7 736 48.9
TAR627G1206 Trochodendron aralioides HOM05D005664 ORTHO05D006509 8.9e-150 535.0 736 47.7
Cpa.g.sc12.60 Carica papaya HOM05D005664 ORTHO05D006509 2.2e-148 530.4 813 45.0
MD11G1047100 Malus domestica HOM05D005664 ORTHO05D006509 8.3e-148 528.5 745 47.7
Prupe.6G035900 Prunus persica HOM05D005664 ORTHO05D006509 7.0e-147 525.4 745 46.4
TWI39G0285 Tripterygium wilfordii HOM05D005664 ORTHO05D006509 6.0e-146 522.3 757 45.7
Gorai.013G147600 Gossypium raimondii HOM05D005664 ORTHO05D006509 4.3e-144 516.2 750 46.3
Gohir.D13G131600 Gossypium hirsutum HOM05D005664 ORTHO05D006509 9.5e-144 515.0 750 46.1
Gohir.A13G128200 Gossypium hirsutum HOM05D005664 ORTHO05D006509 2.8e-143 513.5 752 46.3
Actinidia30345 Actinidia chinensis HOM05D005664 ORTHO05D006509 8.9e-142 508.4 741 46.0
TAR629G3046 Trochodendron aralioides HOM05D005664 ORTHO05D006509 2.6e-141 506.9 728 45.9
Rhsim06G0235600 Rhododendron simsii HOM05D005664 ORTHO05D006509 7.0e-139 498.8 745 44.4
vmacro11645 Vaccinium macrocarpon HOM05D005664 ORTHO05D006509 1.6e-138 497.7 756 44.0
MD03G1043600 Malus domestica HOM05D005664 ORTHO05D006509 2.3e-137 493.8 745 46.4
Eucgr.F01983 Eucalyptus grandis HOM05D005664 ORTHO05D006509 1.2e-135 488.0 751 42.6
Nn1g09430 Nelumbo nucifera HOM05D005664 ORTHO05D006509 8.1e-135 485.3 861 39.7
MELO3C013227.2 Cucumis melo HOM05D005664 ORTHO05D006509 3.4e-133 479.9 733 43.1
CsaV3_7G021290 Cucumis sativus L. HOM05D005664 ORTHO05D006509 8.3e-132 475.3 733 43.1
Nn7g37452 Nelumbo nucifera HOM05D005664 ORTHO05D006509 2.3e-129 467.2 890 37.3
ClCG09G021770 Citrullus lanatus HOM05D005664 ORTHO05D006509 1.1e-126 458.4 735 41.9
Oeu052022.1 Olea europaea HOM05D005664 ORTHO05D006509 6.0e-122 442.6 730 43.3
FvH4_3g41520 Fragaria vesca HOM05D005664 ORTHO05D006509 3.0e-121 440.3 738 43.1
Cc05_g15770 Coffea canephora HOM05D005664 ORTHO05D006509 5.6e-120 436.0 733 42.2
FAN16G2562 Fragaria x ananassa HOM05D005664 ORTHO05D006509 2.8e-119 433.7 741 42.4
FAN25G3031 Fragaria x ananassa HOM05D005664 ORTHO05D006509 6.2e-119 432.6 743 42.9
RcHm_v2.0_Chr5g0074471 Rosa chinensis HOM05D005664 ORTHO05D006509 1.1e-118 431.8 739 42.9
FAN11G0133 Fragaria x ananassa HOM05D005664 ORTHO05D006509 1.4e-118 431.4 745 43.1
FAN21G3314 Fragaria x ananassa HOM05D005664 ORTHO05D006509 3.4e-117 426.8 740 43.4
Oeu015275.1 Olea europaea HOM05D005664 ORTHO05D006509 9.9e-117 425.2 733 40.9
CSS0025023 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 2.2e-116 424.1 698 42.7
Sed0014853 Sechium edule HOM05D005664 ORTHO05D006509 1.1e-115 421.8 732 40.8
DCAR_016806 Daucus carota HOM05D005664 ORTHO05D006509 1.7e-108 397.9 744 40.6
Sed0021044 Sechium edule HOM05D005664 ORTHO05D006509 1.2e-106 391.7 714 39.2
MBI14_g10255_MAGBIO Magnolia biondii HOM05D005664 ORTHO05D006509 1.5e-104 384.8 740 39.5
THA.LOC104813471 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 1.3e-103 381.7 751 38.1
MSTRG.16129 Avicennia marina HOM05D005664 ORTHO05D006509 4.8e-103 379.8 748 39.4
CAN.G492.59 Capsicum annuum HOM05D005664 ORTHO05D006509 1.1e-102 378.6 734 39.6
Hma1.2p1_0321F.1_g124370 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 9.9e-101 372.1 733 39.7
SalBow8G4453 Salvia bowleyana HOM05D005664 ORTHO05D006509 6.4e-100 369.4 721 38.7
Nitab4.5_0000611g0180 Nicotiana tabacum HOM05D005664 ORTHO05D006509 8.4e-100 369.0 740 39.3
PGSC0003DMG400011270 Solanum tuberosum HOM05D005664 ORTHO05D006509 3.2e-99 367.1 750 38.8
Sopen10g001670 Solanum pennellii HOM05D005664 ORTHO05D006509 9.3e-99 365.5 756 38.6
Solyc10g005700.3 Solanum lycopersicum HOM05D005664 ORTHO05D006509 2.5e-96 357.5 740 39.9
THA.LOC104813465 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 3.3e-96 357.1 748 37.2
Nitab4.5_0001622g0140 Nicotiana tabacum HOM05D005664 ORTHO05D006509 1.2e-93 348.6 728 38.0
PSO063G4895 Papaver somniferum HOM05D005664 ORTHO05D006509 2.5e-91 340.9 737 37.2
PSO782G2174 Papaver somniferum HOM05D005664 ORTHO05D006509 3.2e-91 340.5 737 37.3
Aqoxy1G04294 Aquilegia oxysepala HOM05D005664 ORTHO05D006509 7.4e-88 329.3 756 36.8
Lj3g0022247 Lotus japonicus HOM05D005664 ORTHO05D006509 4.1e-86 323.6 723 35.0
Peaxi162Scf00006g00092 Petunia axillaris HOM05D005664 ORTHO05D006509 7.7e-85 319.3 749 36.0
PGSC0003DMG400002313 Solanum tuberosum HOM05D005664 ORTHO05D006509 3.8e-84 317.0 738 36.2
Migut.M01578 Erythranthe guttata HOM05D005664 ORTHO05D006509 1.9e-83 314.7 721 36.1
Sopen12g008050 Solanum pennellii HOM05D005664 ORTHO05D006509 7.2e-83 312.8 747 35.6
Aa31LG5G11790 Aethionema arabicum HOM05D005664 ORTHO05D006509 1.2e-82 312.0 764 33.6
Solyc12g017230.2 Solanum lycopersicum HOM05D005664 ORTHO05D006509 3.6e-82 310.5 746 35.8
CAN.G8.46 Capsicum annuum HOM05D005664 ORTHO05D006509 7.9e-82 309.3 742 35.4
AL7G26500 Arabidopsis lyrata HOM05D005664 ORTHO05D006509 2.5e-80 304.3 768 35.0
Glyma.06G321000 Glycine max HOM05D005664 ORTHO05D006509 2.2e-79 301.2 711 36.1
Sp7g24360 Schrenkiella parvula HOM05D005664 ORTHO05D006509 2.8e-79 300.8 757 34.5
Carub.0007s1448 Capsella rubella HOM05D005664 ORTHO05D006509 3.7e-79 300.4 763 34.5
Glyma.04G114300 Glycine max HOM05D005664 ORTHO05D006509 1.1e-78 298.9 711 36.3
AT4G26450 Arabidopsis thaliana HOM05D005664 ORTHO05D006509 1.8e-78 298.1 765 35.2
unitig_37.g12212 Utricularia gibba HOM05D005664 ORTHO05D006509 3.1e-78 297.4 732 34.0
arahy.Tifrunner.gnm1.ann1.C46LV5 Arachis hypogaea HOM05D005664 ORTHO05D006509 4.1e-78 297.0 731 36.4
Phvul.005G005100 Phaseolus vulgaris HOM05D005664 ORTHO05D006509 6.9e-78 296.2 724 34.9
Lalb_Chr18g0048701 Lupinus albus HOM05D005664 ORTHO05D006509 1.3e-76 292.0 732 35.4
arahy.Tifrunner.gnm1.ann1.GFW533 Arachis hypogaea HOM05D005664 ORTHO05D006509 1.7e-76 291.6 728 35.9
CARHR234010 Cardamine hirsuta HOM05D005664 ORTHO05D006509 2.5e-75 287.7 780 34.4
VMungo1080G0452 Vigna mungo HOM05D005664 ORTHO05D006509 1.6e-74 285.0 730 34.9
Thhalv10024531m.g Eutrema salsugineum HOM05D005664 ORTHO05D006509 2.7e-74 284.3 772 33.2
Ca_14130_v3 Cicer arietinum L. HOM05D005664 ORTHO05D006509 8.2e-71 272.7 696 35.5
SGA_v2.0_scaffold186G40232 Striga asiatica HOM05D005664 ORTHO05D006509 1.1e-70 272.3 736 34.2
Lalb_Chr15g0079911 Lupinus albus HOM05D005664 ORTHO05D006509 2.4e-70 271.2 679 32.1
Medtr3g009540 Medicago truncatula HOM05D005664 ORTHO05D006509 2.0e-69 268.1 715 34.1
TPR.G16700 Trifolium pratense HOM05D005664 ORTHO05D006509 1.9e-67 261.5 787 34.1
Oeu062669.1 Olea europaea HOM05D005664 ORTHO05D006509 3.2e-67 260.8 727 35.8
Hund01929 Selenicereus undatus HOM05D005664 ORTHO05D006509 1.8e-65 255.0 699 32.8
Lsat_1_v5_gn_7_115861 Lactuca sativa HOM05D005664 ORTHO05D006509 3.0e-65 254.2 728 32.4
HanXRQChr17g0546881 Helianthus annuus HOM05D005664 ORTHO05D006509 1.1e-64 252.3 725 33.1
Psat5g231360 Pisum sativum HOM05D005664 ORTHO05D006509 4.4e-64 250.4 785 33.2
A01p17690 Brassica napus HOM05D005664 ORTHO05D006509 4.1e-62 243.8 762 31.9
Hund01927 Selenicereus undatus HOM05D005664 ORTHO05D006509 4.1e-62 243.8 685 33.0
CANSAT11G1251 Cannabis sativa HOM05D005664 ORTHO05D006509 5.3e-62 243.4 731 33.7
A03p56710 Brassica napus HOM05D005664 ORTHO05D006509 7.0e-62 243.0 781 31.6
BraA03t14741Z Brassica rapa HOM05D005664 ORTHO05D006509 7.0e-62 243.0 781 31.6
CDE11G0421 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 9.1e-62 242.7 752 31.2
BraA01t01725Z Brassica rapa HOM05D005664 ORTHO05D006509 1.2e-61 242.3 764 32.2
C01p22360 Brassica napus HOM05D005664 ORTHO05D006509 1.6e-61 241.9 758 32.7
C07p54910 Brassica napus HOM05D005664 ORTHO05D006509 2.6e-61 241.1 774 31.4
BolC7t45979H Brassica oleracea HOM05D005664 ORTHO05D006509 2.6e-61 241.1 774 31.4
AUR62015929 Chenopodium quinoa HOM05D005664 ORTHO05D006509 8.5e-60 236.1 700 33.7
BolC1t02167H Brassica oleracea HOM05D005664 ORTHO05D006509 2.5e-59 234.6 763 31.8
BcaC09g50709 Brassica carinata HOM05D005664 ORTHO05D006509 7.2e-59 233.0 759 32.0
AUR62040680 Chenopodium quinoa HOM05D005664 ORTHO05D006509 1.2e-58 232.3 698 32.5
BcaC06g32747 Brassica carinata HOM05D005664 ORTHO05D006509 2.1e-58 231.5 791 30.5
Sc03g0011800 Simmondsia chinensis HOM05D005664 ORTHO05D006509 4.7e-58 230.3 732 32.8
CDE05G2921 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 1.0e-52 212.6 744 29.8
EL10Ac4g07635 Beta vulgaris HOM05D005664 ORTHO05D006509 2.2e-52 211.5 695 31.9
MSTRG.13052 Avicennia marina HOM05D005664 ORTHO05D006509 7.2e-51 206.5 557 35.5
Lj1A901T36 Lonicera japonica HOM05D005664 ORTHO05D006509 4.0e-49 200.7 270 46.3
unitig_46.g18526 Utricularia gibba HOM05D005664 ORTHO05D006509 4.4e-48 197.2 658 30.4
ECA236G2587 Erigeron canadensis HOM05D005664 ORTHO05D006509 7.5e-48 196.4 723 30.2
Ah.04g166380 Amaranthus hybridus HOM05D005664 ORTHO05D006509 5.2e-41 173.7 699 30.5
Ah.06g181030 Amaranthus hybridus HOM05D000037 ORTHO05D006509 1.3e-36 159.1 688 28.9
GSVIVG01014850001 Vitis vinifera HOM05D005664 ORTHO05D006509 3.6e-34 151.0 155 57.4
Lj1A901G38 Lonicera japonica HOM05D005664 ORTHO05D006509 6.8e-33 146.7 123 61.8
HPP92_019365 Vanilla planifolia HOM05D005664 ORTHO05D006509 1.7e-28 132.1 688 27.5
ATR0021G035 Amborella trichopoda HOM05D005664 ORTHO05D006509 3.9e-28 131.0 601 30.9
Migut.H01706 Erythranthe guttata HOM05D005664 ORTHO05D006509 1.1e-25 122.9 746 26.9
SEGI_32826 Sequoiadendron giganteum HOM05D005664 ORTHO05D006509 4.3e-19 100.9 601 27.3
Zm00001eb422560 Zea mays HOM05D019841 ORTHO05D006509 4.6e-13 80.9 742 24.1
HPP92_028056 Vanilla planifolia HOM05D005664 ORTHO05D006509 6.0e-13 80.5 200 38.5
MSTRG.7045 Avicennia marina HOM05D005664 ORTHO05D006509 9.6e-11 73.2 95 43.2
Actinidia33104 Actinidia chinensis HOM05D005664 ORTHO05D006509 8.9e-09 66.6 45 71.1
Psat6g196680 Pisum sativum HOM05D005664 ORTHO05D006509 1.5e-08 65.9 115 34.8
Os02g0550000 Oryza sativa ssp. japonica HOM05D019841 ORTHO05D037008 2.9e-07 61.6 190 28.4


User provided reference genes

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