Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0320700 Salix brachista HOM05D003788 ORTHO05D004633 0.0e+00 2917.9 1484 100.0
Potri.001G472400 Populus trichocarpa HOM05D003788 ORTHO05D004633 0.0e+00 2493.4 1494 87.2
Potri.011G169100 Populus trichocarpa HOM05D003788 ORTHO05D004633 0.0e+00 2149.8 1502 75.9
Sabra11G0137700 Salix brachista HOM05D003788 ORTHO05D004633 0.0e+00 2080.8 1497 73.9
Manes.05G204500 Manihot esculenta HOM05D003788 ORTHO05D004633 0.0e+00 1419.4 1509 56.1
Manes.01G007100 Manihot esculenta HOM05D003788 ORTHO05D004633 0.0e+00 1191.4 1305 54.7
Thecc.07G001100 Theobroma cacao HOM05D003788 ORTHO05D004633 0.0e+00 1172.1 1513 48.9
QL08p000460 Quercus lobata HOM05D003788 ORTHO05D004633 0.0e+00 1162.5 1520 48.3
Cfa016964 Carpinus fangiana HOM05D003788 ORTHO05D004633 0.0e+00 1149.4 1495 48.0
Haze_09919 Corylus avellana HOM05D003788 ORTHO05D004633 0.0e+00 1147.9 1524 47.7
Ciclev10007254m.g Citrus clementina HOM05D003788 ORTHO05D004633 0.0e+00 1096.3 1512 47.4
Duzib213G0477 Durio zibethinus HOM05D003788 ORTHO05D004633 0.0e+00 1089.7 1514 46.8
Duzib268G1743 Durio zibethinus HOM05D003788 ORTHO05D004633 0.0e+00 1079.3 1513 47.1
Atru.chr2.3902 Acer truncatum HOM05D003788 ORTHO05D004633 3.3e-305 1052.4 1528 46.8
Gorai.013G147700 Gossypium raimondii HOM05D003788 ORTHO05D004633 7.0e-295 1018.1 1508 45.0
Gohir.A13G128300 Gossypium hirsutum HOM05D003788 ORTHO05D004633 2.0e-294 1016.5 1507 45.2
Gohir.D13G131700 Gossypium hirsutum HOM05D003788 ORTHO05D004633 5.0e-293 1011.9 1508 44.6
CiPaw.11G210900 Carya illinoinensis HOM05D003788 ORTHO05D004633 7.5e-289 998.0 1501 44.2
COL.COLO4_07793 Corchorus olitorius HOM05D003788 ORTHO05D004633 2.2e-288 996.5 1525 44.1
Prupe.6G035800 Prunus persica HOM05D003788 ORTHO05D004633 2.8e-288 996.1 1523 45.2
Duzib170G0482 Durio zibethinus HOM05D003788 ORTHO05D004633 6.3e-280 968.4 1512 44.0
Dinv40920 Davidia involucrata HOM05D003788 ORTHO05D004633 3.7e-272 942.6 1507 44.6
TWI38G0822 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 8.6e-269 931.4 1564 43.5
TWI39G0992 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 8.6e-269 931.4 1514 42.8
Dinv19640 Davidia involucrata HOM05D003788 ORTHO05D004633 8.3e-264 914.8 1503 44.0
MD11G1046500 Malus domestica HOM05D003788 ORTHO05D004633 1.6e-262 910.6 1527 42.6
MD03G1043400 Malus domestica HOM05D003788 ORTHO05D004633 1.3e-256 891.0 1529 42.4
RcHm_v2.0_Chr5g0074531 Rosa chinensis HOM05D003788 ORTHO05D004633 3.9e-253 879.4 1519 41.2
CiPaw.12G143000 Carya illinoinensis HOM05D003788 ORTHO05D004633 9.9e-249 864.8 1233 44.7
CSS0022631 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 8.4e-240 835.1 1517 40.9
FAN16G1134 Fragaria x ananassa HOM05D003788 ORTHO05D004633 2.4e-239 833.6 1520 40.8
FAN11G0056 Fragaria x ananassa HOM05D003788 ORTHO05D004633 4.2e-239 832.8 1521 40.7
FvH4_3g41530 Fragaria vesca HOM05D003788 ORTHO05D004633 1.0e-237 828.2 1522 40.7
FAN21G2445 Fragaria x ananassa HOM05D003788 ORTHO05D004633 1.8e-229 800.8 1519 39.9
FAN25G3203 Fragaria x ananassa HOM05D003788 ORTHO05D004633 6.4e-224 782.3 1519 39.8
Gorai.004G034500 Gossypium raimondii HOM05D003788 ORTHO05D004633 2.2e-208 730.7 1471 39.4
Gohir.D08G036500 Gossypium hirsutum HOM05D003788 ORTHO05D004633 1.0e-205 721.8 1477 38.9
TAR629G3040 Trochodendron aralioides HOM05D003788 ORTHO05D004633 5.7e-204 716.1 1554 37.3
Eucgr.F01984 Eucalyptus grandis HOM05D003788 ORTHO05D004633 5.0e-200 703.0 1516 38.3
Gohir.A08G026000 Gossypium hirsutum HOM05D003788 ORTHO05D004633 4.4e-196 689.9 1476 37.8
CsaV3_3G003820 Cucumis sativus L. HOM05D003788 ORTHO05D004633 1.7e-192 677.9 1502 36.3
MELO3C014063.2 Cucumis melo HOM05D003788 ORTHO05D004633 2.2e-192 677.6 1502 36.7
ClCG10G003840 Citrullus lanatus HOM05D003788 ORTHO05D004633 8.5e-192 675.6 1500 36.9
ClCG10G003960 Citrullus lanatus HOM05D003788 ORTHO05D004633 1.1e-191 675.2 1500 37.0
TAR626G0610 Trochodendron aralioides HOM05D003788 ORTHO05D004633 1.6e-190 671.4 1573 36.1
TWI14G1222 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 3.6e-182 643.7 968 45.5
CSS0046183 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 7.5e-180 636.0 1518 36.9
CANSAT11G0655 Cannabis sativa HOM05D003788 ORTHO05D004633 9.7e-180 635.6 1579 35.8
Actinidia31533 Actinidia chinensis HOM05D003788 ORTHO05D004633 8.2e-179 632.5 1379 37.4
CSS0001498 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 1.4e-178 631.7 1518 36.8
Sed0023936 Sechium edule HOM05D003788 ORTHO05D004633 1.0e-176 625.5 1491 34.1
TAR627G0146 Trochodendron aralioides HOM05D003788 ORTHO05D004633 8.5e-176 622.5 1367 37.5
GSVIVG01014849001 Vitis vinifera HOM05D003788 ORTHO05D004633 7.2e-175 619.4 1263 38.5
ClCG00G001230 Citrullus lanatus HOM05D003788 ORTHO05D004633 1.5e-172 611.7 1493 36.0
Sed0020897 Sechium edule HOM05D003788 ORTHO05D004633 1.7e-163 581.6 1499 34.1
Rhsim06G0235500 Rhododendron simsii HOM05D003788 ORTHO05D004633 6.6e-160 569.7 1454 34.5
Oeu052883.2 Olea europaea HOM05D003788 ORTHO05D004633 2.2e-155 554.7 1528 33.6
PGR031G1033 Punica granatum HOM05D003788 ORTHO05D004633 4.9e-155 553.5 1273 38.3
PGSC0003DMG400022144 Solanum tuberosum HOM05D003788 ORTHO05D004633 6.8e-141 506.5 1547 32.5
Oeu015274.1 Olea europaea HOM05D003788 ORTHO05D004633 7.5e-140 503.1 1363 33.7
Sopen07g034380 Solanum pennellii HOM05D003788 ORTHO05D004633 3.7e-139 500.7 1545 32.8
vmacro11644 Vaccinium macrocarpon HOM05D003788 ORTHO05D004633 1.7e-136 491.9 1449 32.2
Nitab4.5_0001732g0050 Nicotiana tabacum HOM05D003788 ORTHO05D004633 4.7e-134 483.8 1470 33.4
Nitab4.5_0000152g0020 Nicotiana tabacum HOM05D003788 ORTHO05D004633 6.8e-133 479.9 1481 33.6
Lj8C184G1 Lonicera japonica HOM05D003788 ORTHO05D004633 1.3e-131 475.7 1219 36.5
DCAR_013754 Daucus carota HOM05D003788 ORTHO05D004633 6.4e-131 473.4 1548 32.4
Solyc07g066200.4 Solanum lycopersicum HOM05D003788 ORTHO05D004633 1.9e-130 471.9 1538 32.4
Nn1g07620 Nelumbo nucifera HOM05D003788 ORTHO05D004633 3.2e-130 471.1 1134 34.6
Lj1A901G37 Lonicera japonica HOM05D003788 ORTHO05D004633 5.4e-130 470.3 1183 36.5
MSTRG.16130 Avicennia marina HOM05D003788 ORTHO05D004633 4.3e-127 460.7 1502 33.0
Peaxi162Scf00232g00078 Petunia axillaris HOM05D003788 ORTHO05D004633 7.3e-127 459.9 1460 32.3
SalBow8G5584 Salvia bowleyana HOM05D003788 ORTHO05D004633 4.7e-126 457.2 1560 32.0
MSTRG.7044 Avicennia marina HOM05D003788 ORTHO05D004633 3.8e-123 447.6 1475 31.9
Aqoxy4G02274 Aquilegia oxysepala HOM05D003788 ORTHO05D004633 4.9e-107 394.0 1564 29.5
THA.LOC104822683 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 8.2e-102 376.7 1249 33.5
THA.LOC104811704 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 7.1e-98 363.6 1298 30.0
AUR62035659 Chenopodium quinoa HOM05D003788 ORTHO05D004633 1.6e-97 362.5 1263 31.8
EL10Ac4g07522 Beta vulgaris HOM05D003788 ORTHO05D004633 7.4e-95 353.6 1185 30.4
THA.LOC104810306 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 1.6e-94 352.4 1284 31.9
Cc05_g15760 Coffea canephora HOM05D003788 ORTHO05D004633 1.8e-93 349.0 706 39.2
AUR62017148 Chenopodium quinoa HOM05D003788 ORTHO05D004633 6.5e-91 340.5 1258 31.6
Hund23029 Selenicereus undatus HOM05D003788 ORTHO05D004633 1.4e-90 339.3 1275 30.4
Cpa.g.sc12.61 Carica papaya HOM05D003788 ORTHO05D004633 5.5e-90 337.4 784 37.4
MBI15_g35998_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 5.5e-90 337.4 1443 29.7
PSO782G4685 Papaver somniferum HOM05D003788 ORTHO05D004633 6.3e-86 323.9 1495 28.9
Sc03g0011790 Simmondsia chinensis HOM05D003788 ORTHO05D004633 7.7e-84 317.0 1251 29.3
Actinidia30347 Actinidia chinensis HOM05D003788 ORTHO05D004633 1.2e-81 309.7 787 36.0
MSTRG.13048 Avicennia marina HOM05D003788 ORTHO05D004633 1.2e-81 309.7 1246 29.2
Hma1.2p1_0321F.1_g124360 Hydrangea macrophylla HOM05D003788 ORTHO05D004633 3.0e-72 278.5 454 41.9
Migut.M01579 Erythranthe guttata HOM05D003788 ORTHO05D004633 1.3e-70 273.1 904 30.8
MBI14_g10253_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 1.1e-69 270.0 747 35.2
Ah.04g166650 Amaranthus hybridus HOM05D003788 ORTHO05D004633 5.3e-69 267.7 396 43.7
Actinidia30346 Actinidia chinensis HOM05D003788 ORTHO05D004633 2.2e-67 262.3 376 47.3
Carub.0008s1656 Capsella rubella HOM05D003788 ORTHO05D004633 2.1e-65 255.8 1218 28.7
Thhalv10012573m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 4.0e-64 251.5 1207 28.0
HanXRQChr17g0546861 Helianthus annuus HOM05D003788 ORTHO05D004633 7.5e-63 247.3 517 37.7
AL8G31870 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 1.1e-61 243.4 1213 27.9
AT5G56240 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 1.8e-61 242.7 1168 28.9
Lsat_1_v5_gn_7_115701 Lactuca sativa HOM05D003788 ORTHO05D004633 4.5e-60 238.0 644 34.5
Aa31LG3G12140 Aethionema arabicum HOM05D003788 ORTHO05D004633 5.0e-59 234.6 1149 27.5
HanXRQChr03g0079411 Helianthus annuus HOM05D003788 ORTHO05D004633 2.5e-58 232.3 688 33.6
ECA236G3073 Erigeron canadensis HOM05D003788 ORTHO05D004633 1.6e-57 229.6 1183 27.9
ATR0751G208 Amborella trichopoda HOM05D003788 ORTHO05D004633 3.6e-57 228.4 619 33.1
Cc05_g15750 Coffea canephora HOM05D003788 ORTHO05D004633 4.7e-57 228.0 587 33.9
HanXRQChr11g0346921 Helianthus annuus HOM05D003788 ORTHO05D004633 5.2e-56 224.6 744 31.5
AL191U10030 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 8.8e-56 223.8 1208 27.2
HPP92_022807 Vanilla planifolia HOM05D003788 ORTHO05D004633 1.5e-55 223.0 529 34.4
Zm00001eb079970 Zea mays HOM05D003788 ORTHO05D004633 3.4e-55 221.9 1231 26.8
Sp6g18090 Schrenkiella parvula HOM05D003788 ORTHO05D004633 4.4e-55 221.5 1046 28.9
Os04g0471400 Oryza sativa ssp. japonica HOM05D003788 ORTHO05D004633 2.4e-53 215.7 537 34.8
Zm00001eb424700 Zea mays HOM05D003788 ORTHO05D004633 3.1e-53 215.3 538 35.3
CARHR269650 Cardamine hirsuta HOM05D003788 ORTHO05D004633 1.6e-52 213.0 611 32.1
AL8G31880 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 2.7e-52 212.2 534 33.7
Carub.0008s1657 Capsella rubella HOM05D003788 ORTHO05D004633 2.7e-52 212.2 595 32.4
Sp6g18100 Schrenkiella parvula HOM05D003788 ORTHO05D004633 1.5e-50 206.5 424 37.7
HPP92_015789 Vanilla planifolia HOM05D003788 ORTHO05D004633 2.5e-50 205.7 513 34.3
ECA240G4117 Erigeron canadensis HOM05D003788 ORTHO05D004633 2.8e-49 202.2 527 35.3
AT5G56250 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 4.7e-49 201.4 469 35.2
Thhalv10012702m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 1.4e-48 199.9 471 35.5
Migut.H01707 Erythranthe guttata HOM05D003788 ORTHO05D004633 1.5e-47 196.4 462 35.5
C02p15420 Brassica napus HOM05D003788 ORTHO05D004633 3.4e-47 195.3 1224 25.6
BolC2t07656H Brassica oleracea HOM05D003788 ORTHO05D004633 3.4e-47 195.3 1224 25.6
C09p47480 Brassica napus HOM05D003788 ORTHO05D004633 7.5e-47 194.1 1218 26.5
BolC9t57603H Brassica oleracea HOM05D003788 ORTHO05D004633 7.5e-47 194.1 1189 26.7
BraA10t43453Z Brassica rapa HOM05D003788 ORTHO05D004633 1.7e-46 193.0 1194 26.0
A10p13490 Brassica napus HOM05D003788 ORTHO05D004633 2.2e-46 192.6 1194 26.0
SGA_v2.0_scaffold11G05962 Striga asiatica HOM05D003788 ORTHO05D004633 3.7e-46 191.8 450 36.4
BcaB05g22252 Brassica carinata HOM05D003788 ORTHO05D004633 1.7e-43 183.0 458 33.4
BcaC04g20117 Brassica carinata HOM05D003788 ORTHO05D004633 2.3e-43 182.6 1192 26.6
unitig_46.g18528 Utricularia gibba HOM05D003788 ORTHO05D004633 6.6e-43 181.0 960 24.9
BcaB01g04387 Brassica carinata HOM05D003788 ORTHO05D004633 4.3e-42 178.3 405 36.8
SGA_v2.0_scaffold7G03552 Striga asiatica HOM05D003788 ORTHO05D004633 9.5e-42 177.2 622 30.5
CARHR269640 Cardamine hirsuta HOM05D003788 ORTHO05D004633 2.1e-41 176.0 1219 26.2
unitig_37.g12213 Utricularia gibba HOM05D003788 ORTHO05D004633 4.7e-41 174.9 966 27.5
A02p09250 Brassica napus HOM05D003788 ORTHO05D004633 1.0e-40 173.7 424 32.5
CDE11G0275 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 3.1e-40 172.2 570 30.4
BraA02t05991Z Brassica rapa HOM05D003788 ORTHO05D004633 5.2e-40 171.4 1239 24.9
unitig_0.g982 Utricularia gibba HOM05D003788 ORTHO05D004633 2.0e-39 169.5 1233 24.8
Lsat_1_v5_gn_9_88661 Lactuca sativa HOM05D003788 ORTHO05D004633 2.6e-39 169.1 460 31.5
C09p47500 Brassica napus HOM05D003788 ORTHO05D004633 3.4e-39 168.7 407 34.9
C03p15980 Brassica napus HOM05D003788 ORTHO05D004633 8.3e-38 164.1 433 33.5
A02p09290 Brassica napus HOM05D003788 ORTHO05D004633 1.1e-37 163.7 1235 24.9
BcaC03g14236 Brassica carinata HOM05D003788 ORTHO05D004633 7.0e-37 161.0 1139 25.5
BolC3t14026H Brassica oleracea HOM05D003788 ORTHO05D004633 7.0e-37 161.0 445 32.8
BcaB05g22251 Brassica carinata HOM05D003788 ORTHO05D004633 9.2e-37 160.6 1304 25.1
BcaC01g06410 Brassica carinata HOM05D003788 ORTHO05D004633 9.2e-37 160.6 449 32.5
BcaC03g14234 Brassica carinata HOM05D003788 ORTHO05D004633 2.3e-35 156.0 438 32.0
C02p15400 Brassica napus HOM05D003788 ORTHO05D004633 2.3e-35 156.0 438 32.0
BolC2t07655H Brassica oleracea HOM05D003788 ORTHO05D004633 2.3e-35 156.0 438 32.0
A03p13630 Brassica napus HOM05D003788 ORTHO05D004633 3.0e-35 155.6 439 33.7
BraA03t10667Z Brassica rapa HOM05D003788 ORTHO05D004633 3.9e-35 155.2 440 33.2
BraA03t10668Z Brassica rapa HOM05D003788 ORTHO05D004633 3.6e-33 148.7 1256 25.0
BcaB01g04386 Brassica carinata HOM05D003788 ORTHO05D004633 1.4e-32 146.7 1186 24.5
BolC3t14027H Brassica oleracea HOM05D003788 ORTHO05D004633 1.8e-32 146.4 432 32.4
BcaC01g06409 Brassica carinata HOM05D003788 ORTHO05D004633 8.9e-32 144.1 432 32.2
A03p13640 Brassica napus HOM05D003788 ORTHO05D004633 2.6e-31 142.5 1274 24.6
BcaC04g20115 Brassica carinata HOM05D003788 ORTHO05D004633 1.3e-30 140.2 222 45.5
BolC9t57606H Brassica oleracea HOM05D003788 ORTHO05D004633 1.3e-30 140.2 222 45.5
C03p15990 Brassica napus HOM05D003788 ORTHO05D004633 8.3e-30 137.5 1233 24.1
CDE06G0258 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 1.7e-27 129.8 390 30.3
CDE05G2211 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 4.1e-21 108.6 724 23.5
MBI14_g12743_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 9.2e-21 107.5 271 35.1
A10p13510 Brassica napus HOM05D003788 ORTHO05D004633 2.7e-20 105.9 220 39.1
Haze_08634 Corylus avellana HOM05D003788 ORTHO05D004633 1.6e-17 96.7 171 40.9
CARHR218680 Cardamine hirsuta HOM05D003788 ORTHO05D004633 6.2e-17 94.7 276 31.2
HPP92_007487 Vanilla planifolia HOM05D003788 ORTHO05D004633 1.1e-16 94.0 134 41.0
SEGI_04749 Sequoiadendron giganteum HOM05D003788 ORTHO05D004633 1.7e-14 86.7 390 25.9
Nn1g09760 Nelumbo nucifera HOM05D003788 ORTHO05D010879 1.9e-13 83.2 276 28.6
CDE03G0063 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 1.9e-10 73.2 140 36.4
BraA02t05990Z Brassica rapa HOM05D003788 ORTHO05D004633 3.3e-10 72.4 259 27.4
TAR365G0164 Trochodendron aralioides HOM05D003788 ORTHO05D010879 5.6e-10 71.6 65 46.2
Aqoxy2G04009 Aquilegia oxysepala HOM05D003788 ORTHO05D010879 1.6e-09 70.1 289 27.0
TAR365G1027 Trochodendron aralioides HOM05D010496 ORTHO05D010879 1.6e-09 70.1 273 27.1
CDE03G0301 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 1.8e-08 66.6 286 26.6
PSO017G0918 Papaver somniferum HOM05D061670 ORTHO05D010879 1.8e-08 66.6 56 50.0
CiPaw.01G109800 Carya illinoinensis HOM05D010496 ORTHO05D010879 3.1e-08 65.9 133 32.3
Haze_11711 Corylus avellana HOM05D010496 ORTHO05D010879 6.9e-08 64.7 164 31.1
Cfa008703 Carpinus fangiana HOM05D010496 ORTHO05D010879 1.2e-07 63.9 199 26.6
PSO675G9246 Papaver somniferum HOM05D061670 ORTHO05D010879 2.6e-07 62.8 117 35.0
Medtr1g116100 Medicago truncatula HOM05D011141 ORTHO05D010879 9.9e-07 60.8 42 59.5
GSVIVG01031653001 Vitis vinifera HOM05D010496 ORTHO05D010879 9.9e-07 60.8 89 33.7
Lj2g0022590 Lotus japonicus HOM05D011141 ORTHO05D010879 1.7e-06 60.1 42 59.5
QL06p027780 Quercus lobata HOM05D010496 ORTHO05D010879 1.7e-06 60.1 135 29.6
MD04G1026500 Malus domestica HOM05D010496 ORTHO05D010879 2.9e-06 59.3 233 28.8
TPR.G10391 Trifolium pratense HOM05D011141 ORTHO05D010879 3.8e-06 58.9 133 30.8


User provided reference genes

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