Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0320400 Salix brachista HOM05D006092 ORTHO05D007508 4.4e-86 321.2 161 100.0
Potri.001G471900 Populus trichocarpa HOM05D006092 ORTHO05D007508 4.3e-81 304.7 161 96.3
Potri.011G168700 Populus trichocarpa HOM05D006092 ORTHO05D007508 8.3e-77 290.4 161 91.9
Sabra11G0138000 Salix brachista HOM05D006092 ORTHO05D007508 1.2e-75 286.6 157 91.7
Cpa.g.sc12.69 Carica papaya HOM05D006092 ORTHO05D007508 2.3e-58 229.2 158 77.2
Thecc.07G001800 Theobroma cacao HOM05D006092 ORTHO05D007508 2.3e-58 229.2 154 81.8
Manes.01G006400 Manihot esculenta HOM05D006092 ORTHO05D007508 3.9e-58 228.4 152 78.9
Atru.chr2.3894 Acer truncatum HOM05D006092 ORTHO05D007508 1.1e-55 220.3 159 75.5
Haze_09914 Corylus avellana HOM05D006092 ORTHO05D007508 1.1e-55 220.3 149 80.5
Glyma.04G112800 Glycine max HOM05D006092 ORTHO05D007508 1.1e-55 220.3 151 78.1
Lj3g0000125 Lotus japonicus HOM05D006092 ORTHO05D007508 1.4e-55 219.9 150 79.3
Cfa016959 Carpinus fangiana HOM05D006092 ORTHO05D007508 2.4e-55 219.2 161 77.6
Phvul.005G004000 Phaseolus vulgaris HOM05D006092 ORTHO05D007508 5.3e-55 218.0 157 74.5
Ciclev10009769m.g Citrus clementina HOM05D006092 ORTHO05D007508 2.6e-54 215.7 153 75.2
Glyma.06G321900 Glycine max HOM05D006092 ORTHO05D007508 2.6e-54 215.7 160 71.2
Lalb_Chr18g0048631 Lupinus albus HOM05D006092 ORTHO05D007508 3.4e-54 215.3 155 72.9
MD03G1042800 Malus domestica HOM05D006092 ORTHO05D007508 4.5e-54 214.9 156 73.1
Gorai.009G454900 Gossypium raimondii HOM05D006092 ORTHO05D007508 7.6e-54 214.2 155 72.9
QL08p000538 Quercus lobata HOM05D006092 ORTHO05D007508 7.6e-54 214.2 147 78.2
Prupe.6G035200 Prunus persica HOM05D006092 ORTHO05D007508 9.9e-54 213.8 157 73.2
VMungo1080G0991 Vigna mungo HOM05D006092 ORTHO05D007508 1.3e-53 213.4 157 73.2
Gohir.A04G001100 Gossypium hirsutum HOM05D006092 ORTHO05D007508 2.9e-53 212.2 155 72.3
Psat5g231800 Pisum sativum HOM05D006092 ORTHO05D007508 4.9e-53 211.5 155 73.5
PGR031G3987 Punica granatum HOM05D006092 ORTHO05D007508 8.4e-53 210.7 159 72.3
TPR.G16714 Trifolium pratense HOM05D006092 ORTHO05D007508 1.9e-52 209.5 158 71.5
BcaB02g10807 Brassica carinata HOM05D006092 ORTHO05D007508 3.2e-52 208.8 163 73.0
A05p17350 Brassica napus HOM05D006092 ORTHO05D007508 3.2e-52 208.8 165 73.3
BraA05t20631Z Brassica rapa HOM05D006092 ORTHO05D007508 3.2e-52 208.8 165 73.3
SalBow8G3834 Salvia bowleyana HOM05D006092 ORTHO05D007508 7.1e-52 207.6 138 81.2
Nn1g07635 Nelumbo nucifera HOM05D006092 ORTHO05D007508 9.3e-52 207.2 155 73.5
BcaC08g44210 Brassica carinata HOM05D006092 ORTHO05D007508 1.2e-51 206.8 161 73.3
BolC6t36815H Brassica oleracea HOM05D006092 ORTHO05D007508 1.2e-51 206.8 161 73.3
C06p16180 Brassica napus HOM05D006092 ORTHO05D007508 1.6e-51 206.5 159 72.3
Carub.0001s4419 Capsella rubella HOM05D006092 ORTHO05D007508 1.6e-51 206.5 163 73.0
MELO3C014124.2 Cucumis melo HOM05D006092 ORTHO05D007508 1.6e-51 206.5 153 73.2
BcaC01g01548 Brassica carinata HOM05D006092 ORTHO05D007508 2.1e-51 206.1 165 71.5
BolC3t21605H Brassica oleracea HOM05D006092 ORTHO05D007508 2.1e-51 206.1 165 71.5
TWI38G1372 Tripterygium wilfordii HOM05D006092 ORTHO05D007508 2.1e-51 206.1 160 71.9
A08p00380 Brassica napus HOM05D006092 ORTHO05D007508 2.7e-51 205.7 162 69.8
BraA08t32097Z Brassica rapa HOM05D006092 ORTHO05D007508 2.7e-51 205.7 162 69.8
RcHm_v2.0_Chr5g0074661 Rosa chinensis HOM05D006092 ORTHO05D007508 2.7e-51 205.7 152 72.4
EL10Ac3g07451 Beta vulgaris HOM05D006092 ORTHO05D007508 3.5e-51 205.3 151 72.8
C03p93010 Brassica napus HOM05D006092 ORTHO05D007508 3.5e-51 205.3 165 71.5
CsaV3_3G004330 Cucumis sativus L. HOM05D006092 ORTHO05D007508 3.5e-51 205.3 144 75.0
ClCG10G004510 Citrullus lanatus HOM05D006092 ORTHO05D007508 6.0e-51 204.5 153 72.5
FAN25G2470 Fragaria x ananassa HOM05D006092 ORTHO05D007508 6.0e-51 204.5 152 71.7
GSVIVG01014842001 Vitis vinifera HOM05D006092 ORTHO05D007508 6.0e-51 204.5 156 73.1
Sed0026101 Sechium edule HOM05D006092 ORTHO05D007508 7.9e-51 204.1 132 79.5
BcaC08g43644 Brassica carinata HOM05D006092 ORTHO05D007508 1.3e-50 203.4 166 71.1
C06p10630 Brassica napus HOM05D006092 ORTHO05D007508 1.3e-50 203.4 166 71.1
BolC6t36143H Brassica oleracea HOM05D006092 ORTHO05D007508 1.3e-50 203.4 166 71.1
Gohir.A13G128600 Gossypium hirsutum HOM05D006092 ORTHO05D007508 1.8e-50 203.0 159 71.1
AT1G55670 Arabidopsis thaliana HOM05D006092 ORTHO05D007508 2.3e-50 202.6 162 71.6
BcaB04g16937 Brassica carinata HOM05D006092 ORTHO05D007508 2.3e-50 202.6 162 69.8
A06p00060 Brassica napus HOM05D006092 ORTHO05D007508 2.3e-50 202.6 161 72.0
BraA06t23221Z Brassica rapa HOM05D006092 ORTHO05D007508 2.3e-50 202.6 161 72.0
FvH4_3g41620 Fragaria vesca HOM05D006092 ORTHO05D007508 2.3e-50 202.6 152 71.7
FAN11G0712 Fragaria x ananassa HOM05D006092 ORTHO05D007508 2.3e-50 202.6 152 71.7
TWI39G1159 Tripterygium wilfordii HOM05D006092 ORTHO05D007508 5.1e-50 201.4 154 72.7
Gorai.013G148000 Gossypium raimondii HOM05D006092 ORTHO05D007508 6.7e-50 201.1 159 70.4
Sc07g0002210 Simmondsia chinensis HOM05D006092 ORTHO05D007508 8.7e-50 200.7 154 70.8
AL1G63740 Arabidopsis lyrata HOM05D006092 ORTHO05D007508 1.1e-49 200.3 161 70.8
PGSC0003DMG400022249 Solanum tuberosum HOM05D006092 ORTHO05D007508 1.5e-49 199.9 137 78.1
BcaB07g33193 Brassica carinata HOM05D006092 ORTHO05D007508 1.9e-49 199.5 162 70.4
Gohir.D13G132000 Gossypium hirsutum HOM05D006092 ORTHO05D007508 1.9e-49 199.5 159 69.8
Solyc07g066150.1 Solanum lycopersicum HOM05D006092 ORTHO05D007508 1.9e-49 199.5 137 78.1
Sopen07g034330 Solanum pennellii HOM05D006092 ORTHO05D007508 1.9e-49 199.5 137 78.1
CAN.G623.73 Capsicum annuum HOM05D006092 ORTHO05D007508 3.3e-49 198.7 140 77.1
Ah.04g149440 Amaranthus hybridus HOM05D006092 ORTHO05D007508 5.6e-49 198.0 154 70.8
Oeu006265.1 Olea europaea HOM05D006092 ORTHO05D007508 5.6e-49 198.0 138 76.8
Thhalv10011835m.g Eutrema salsugineum HOM05D006092 ORTHO05D007508 7.4e-49 197.6 162 70.4
Oeu013004.1 Olea europaea HOM05D006092 ORTHO05D007508 7.4e-49 197.6 137 77.4
CARHR045350 Cardamine hirsuta HOM05D006092 ORTHO05D007508 1.3e-48 196.8 161 71.4
Aa31LG10G560 Aethionema arabicum HOM05D006092 ORTHO05D007508 2.1e-48 196.1 163 71.2
Eucgr.F03646 Eucalyptus grandis HOM05D006092 ORTHO05D007508 2.1e-48 196.1 142 72.5
HanXRQChr08g0232881 Helianthus annuus HOM05D006092 ORTHO05D007508 3.7e-48 195.3 139 77.0
PSO063G2976 Papaver somniferum HOM05D006092 ORTHO05D007508 4.8e-48 194.9 157 70.1
PSO782G4285 Papaver somniferum HOM05D006092 ORTHO05D007508 4.8e-48 194.9 157 70.1
THA.LOC104810303 Tarenaya hassleriana HOM05D006092 ORTHO05D007508 4.8e-48 194.9 158 68.4
SGA_v2.0_scaffold186G40234 Striga asiatica HOM05D006092 ORTHO05D007508 1.1e-47 193.7 131 77.1
MBI15_g47073_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 1.4e-47 193.4 152 70.4
Lsat_1_v5_gn_5_381 Lactuca sativa HOM05D006092 ORTHO05D007508 2.4e-47 192.6 139 77.0
THA.LOC104822703 Tarenaya hassleriana HOM05D006092 ORTHO05D007508 2.4e-47 192.6 153 70.6
ECA246G4981 Erigeron canadensis HOM05D006092 ORTHO05D007508 4.0e-47 191.8 140 75.7
HanXRQChr05g0160351 Helianthus annuus HOM05D006092 ORTHO05D007508 4.0e-47 191.8 136 76.5
arahy.Tifrunner.gnm1.ann1.4PD0PP Arachis hypogaea HOM05D006092 ORTHO05D007508 6.9e-47 191.0 153 68.6
AUR62020866 Chenopodium quinoa HOM05D006092 ORTHO05D007508 6.9e-47 191.0 107 87.9
MBI14_g12737_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 6.9e-47 191.0 152 69.1
ATR0751G135 Amborella trichopoda HOM05D006092 ORTHO05D007508 9.0e-47 190.7 165 66.7
CDE11G0224 Ceratophyllum demersum HOM05D006092 ORTHO05D007508 9.0e-47 190.7 164 67.7
MBI15_g47946_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 1.2e-46 190.3 152 69.7
CDE05G1532 Ceratophyllum demersum HOM05D006092 ORTHO05D007508 1.5e-46 189.9 164 67.1
unitig_37.g11908 Utricularia gibba HOM05D006092 ORTHO05D007508 1.5e-46 189.9 136 75.7
CANSAT11G0425 Cannabis sativa HOM05D006092 ORTHO05D007508 2.0e-46 189.5 135 74.8
AUR62018553 Chenopodium quinoa HOM05D006092 ORTHO05D007508 2.6e-46 189.1 101 92.1
Migut.M01583 Erythranthe guttata HOM05D006092 ORTHO05D007508 2.6e-46 189.1 140 72.9
Rhsim04G0007400 Rhododendron simsii HOM05D006092 ORTHO05D007508 3.4e-46 188.7 134 76.1
Nitab4.5_0000611g0110 Nicotiana tabacum HOM05D006092 ORTHO05D007508 5.8e-46 188.0 136 74.3
Nitab4.5_0000611g0120 Nicotiana tabacum HOM05D006092 ORTHO05D007508 5.8e-46 188.0 137 75.2
unitig_92.g28271 Utricularia gibba HOM05D006092 ORTHO05D007508 7.6e-46 187.6 133 74.4
Aqoxy4G02265 Aquilegia oxysepala HOM05D006092 ORTHO05D007508 9.9e-46 187.2 155 67.7
COL.COLO4_07787 Corchorus olitorius HOM05D006092 ORTHO05D007508 2.9e-45 185.7 105 88.6
Nitab4.5_0001622g0160 Nicotiana tabacum HOM05D006092 ORTHO05D007508 3.8e-45 185.3 133 74.4
Medtr3g010000 Medicago truncatula HOM05D006092 ORTHO05D007508 4.9e-45 184.9 158 66.5
HPP92_022812 Vanilla planifolia HOM05D006092 ORTHO05D007508 1.4e-44 183.3 113 82.3
Zm00001eb316290 Zea mays HOM05D006092 ORTHO05D007508 1.4e-44 183.3 138 69.6
CARHR087970 Cardamine hirsuta HOM05D006092 ORTHO05D007508 1.9e-44 183.0 166 65.7
Lj8P183T26 Lonicera japonica HOM05D006092 ORTHO05D007508 3.2e-44 182.2 156 65.4
Os09g0481200 Oryza sativa ssp. japonica HOM05D006092 ORTHO05D007508 5.5e-44 181.4 139 66.9
Sed0012341 Sechium edule HOM05D006092 ORTHO05D007508 2.1e-43 179.5 130 73.1
Zm00001eb101660 Zea mays HOM05D006092 ORTHO05D007508 3.9e-42 175.3 103 82.5
CiPaw.11G210500 Carya illinoinensis HOM05D006092 ORTHO05D007508 3.3e-41 172.2 135 71.9
Nitab4.5_0000611g0130 Nicotiana tabacum HOM05D006092 ORTHO05D007508 1.8e-39 166.4 131 70.2
SEGI_13197 Sequoiadendron giganteum HOM05D006092 ORTHO05D007508 2.6e-38 162.5 134 67.2
Dinv40914 Davidia involucrata HOM05D006092 ORTHO05D007508 6.5e-37 157.9 130 66.2
Pp3c9_15440 Physcomitrium patens HOM05D006092 ORTHO05D007508 9.7e-33 144.1 131 56.5
Pp3c15_5850 Physcomitrium patens HOM05D006092 ORTHO05D007508 4.8e-32 141.7 132 56.1
SMO353G0046 Selaginella moellendorffii HOM05D006092 ORTHO05D007508 1.2e-30 137.1 102 65.7
AagrBONN_evm.TU.Sc2ySwM_228.5128 Anthoceros agrestis HOM05D006092 ORTHO05D007508 1.7e-29 133.3 111 63.1
Sp1g41280 Schrenkiella parvula HOM05D006092 ORTHO05D007508 2.9e-29 132.5 165 54.5
Mapoly0038s0054 Marchantia polymorpha HOM05D006092 ORTHO05D007508 4.2e-28 128.6 138 54.3
CBR_g28070 Chara braunii HOM05D006092 ORTHO05D007508 1.2e-27 127.1 137 51.8
TAR627G0509 Trochodendron aralioides HOM05D006092 ORTHO05D007508 7.7e-22 107.8 68 77.9
EL10As5g23536 Beta vulgaris HOM05D006092 ORTHO05D007508 4.7e-19 98.6 52 90.4
PGSC0003DMG400006702 Solanum tuberosum HOM05D006092 ORTHO05D007508 6.1e-19 98.2 106 52.8
EL10Ac3g06625 Beta vulgaris HOM05D006092 ORTHO05D007508 1.8e-18 96.7 50 92.0
EL10Ac5g10941 Beta vulgaris HOM05D006092 ORTHO05D007508 1.8e-18 96.7 50 92.0
PRCOL_00006984 Prasinoderma coloniale HOM05D006092 ORTHO05D007508 8.8e-18 94.4 90 53.3
MCO01G478 Micromonas commoda HOM05D006092 ORTHO05D007508 8.2e-16 87.8 123 43.1
Cre12.g560950 Chlamydomonas reinhardtii HOM05D006092 ORTHO05D007508 2.1e-11 73.2 110 35.5


User provided reference genes

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