Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0307100 Salix brachista HOM05D000087 ORTHO05D005735 0.0e+00 2293.5 1200 100.0
Manes.17G015000 Manihot esculenta HOM05D000087 ORTHO05D005735 0.0e+00 1437.2 1170 65.9
Potri.001G454200 Populus trichocarpa HOM05D000087 ORTHO05D005735 0.0e+00 1422.1 826 91.8
Duzib068G0232 Durio zibethinus HOM05D000087 ORTHO05D005735 0.0e+00 1377.5 1165 63.5
Thecc.03G213700 Theobroma cacao HOM05D000087 ORTHO05D005735 0.0e+00 1344.3 1165 64.0
Prupe.5G137300 Prunus persica HOM05D000087 ORTHO05D005735 0.0e+00 1334.3 1156 63.6
GSVIVG01019707001 Vitis vinifera HOM05D000087 ORTHO05D005735 0.0e+00 1332.0 1174 62.4
RcHm_v2.0_Chr7g0188131 Rosa chinensis HOM05D000087 ORTHO05D005735 0.0e+00 1329.7 1159 63.3
Ciclev10018581m.g Citrus clementina HOM05D000087 ORTHO05D005735 0.0e+00 1318.9 1151 62.1
Gorai.004G127300 Gossypium raimondii HOM05D000087 ORTHO05D005735 0.0e+00 1317.8 1166 61.4
TWI81G0850 Tripterygium wilfordii HOM05D000087 ORTHO05D005735 0.0e+00 1314.7 1165 63.3
Gohir.A08G107500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 0.0e+00 1308.1 1166 61.0
MD06G1127500 Malus domestica HOM05D000087 ORTHO05D005735 0.0e+00 1307.7 1168 62.0
FvH4_5g10170 Fragaria vesca HOM05D000087 ORTHO05D005735 0.0e+00 1304.3 1165 61.9
FAN04G3195 Fragaria x ananassa HOM05D000087 ORTHO05D005735 0.0e+00 1299.3 1157 62.2
QL02p026653 Quercus lobata HOM05D000087 ORTHO05D005735 0.0e+00 1289.2 1133 63.1
FAN08G3226 Fragaria x ananassa HOM05D000087 ORTHO05D005735 0.0e+00 1283.1 1165 61.3
Dinv11465 Davidia involucrata HOM05D000087 ORTHO05D005735 0.0e+00 1279.6 1156 61.9
TAR629G0355 Trochodendron aralioides HOM05D000087 ORTHO05D005735 0.0e+00 1265.4 1168 59.9
Gohir.D08G120500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 0.0e+00 1265.0 1160 59.8
FAN18G4270 Fragaria x ananassa HOM05D000087 ORTHO05D005735 0.0e+00 1259.6 1165 60.4
Cfa011874 Carpinus fangiana HOM05D000087 ORTHO05D005735 0.0e+00 1214.5 1147 58.4
CANSAT64G2851 Cannabis sativa HOM05D000087 ORTHO05D005735 0.0e+00 1203.7 1142 59.3
Lj2C147G10 Lonicera japonica HOM05D000087 ORTHO05D005735 0.0e+00 1177.5 1177 57.3
Actinidia22240 Actinidia chinensis HOM05D000087 ORTHO05D005735 0.0e+00 1153.3 1206 55.4
PSO063G0654 Papaver somniferum HOM05D000087 ORTHO05D005735 0.0e+00 1148.3 1170 54.3
Eucgr.D02539 Eucalyptus grandis HOM05D000087 ORTHO05D005735 0.0e+00 1144.8 1179 55.4
Haze_09232 Corylus avellana HOM05D000087 ORTHO05D005735 0.0e+00 1136.7 1157 56.0
PSO782G2195 Papaver somniferum HOM05D000087 ORTHO05D005735 0.0e+00 1124.4 1166 53.9
Sed0004639 Sechium edule HOM05D000087 ORTHO05D005735 0.0e+00 1106.3 1215 52.9
Lj6g0001276 Lotus japonicus HOM05D000087 ORTHO05D005735 0.0e+00 1105.5 1172 52.8
CsaV3_5G001350 Cucumis sativus L. HOM05D000087 ORTHO05D005735 0.0e+00 1102.0 1166 53.6
Nn3g18737 Nelumbo nucifera HOM05D000087 ORTHO05D005735 0.0e+00 1079.3 1172 53.2
THA.LOC104806594 Tarenaya hassleriana HOM05D000087 ORTHO05D005735 0.0e+00 1078.5 1152 53.8
Rhsim02G0255700 Rhododendron simsii HOM05D000087 ORTHO05D005735 8.2e-312 1074.7 1241 51.2
Lalb_Chr14g0362591 Lupinus albus HOM05D000087 ORTHO05D005735 8.2e-312 1074.3 1160 52.2
EL10Ac2g03880 Beta vulgaris HOM05D000087 ORTHO05D005735 2.5e-311 1072.4 1208 50.7
Carub.0007s0001 Capsella rubella HOM05D000087 ORTHO05D005735 4.1e-311 1071.6 1162 51.8
AUR62039113 Chenopodium quinoa HOM05D000087 ORTHO05D005735 1.2e-310 1070.1 1167 52.0
Psat5g111000 Pisum sativum HOM05D000087 ORTHO05D005735 7.6e-308 1060.8 1160 52.4
Sp7g37630 Schrenkiella parvula HOM05D000087 ORTHO05D005735 9.9e-308 1060.4 1155 52.9
C01p21480 Brassica napus HOM05D000087 ORTHO05D005735 1.3e-307 1060.1 1156 51.9
BolC1t02068H Brassica oleracea HOM05D000087 ORTHO05D005735 1.3e-307 1060.1 1156 51.9
AUR62009145 Chenopodium quinoa HOM05D000087 ORTHO05D005735 1.1e-306 1057.0 1152 52.6
AL7G10010 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 2.4e-306 1055.8 1154 51.9
AT4G38120 Arabidopsis thaliana HOM05D000087 ORTHO05D005735 1.7e-304 1049.7 1155 51.2
A01p17150 Brassica napus HOM05D000087 ORTHO05D005735 3.6e-302 1042.0 1156 51.3
BraA01t01671Z Brassica rapa HOM05D000087 ORTHO05D005735 1.8e-301 1039.6 1158 51.1
PGR031G2531 Punica granatum HOM05D000087 ORTHO05D005735 2.6e-300 1035.8 1168 51.8
ClCG01G001230 Citrullus lanatus HOM05D000087 ORTHO05D005735 4.9e-299 1031.6 1303 47.9
ECA246G1365 Erigeron canadensis HOM05D000087 ORTHO05D005735 4.9e-299 1031.6 1155 52.0
Medtr3g080640 Medicago truncatula HOM05D000087 ORTHO05D005735 8.4e-299 1030.8 1118 52.9
HanXRQChr01g0016041 Helianthus annuus HOM05D000087 ORTHO05D005735 1.6e-297 1026.5 1169 51.8
MSTRG.22476 Avicennia marina HOM05D000087 ORTHO05D005735 3.9e-296 1021.9 1167 48.8
CiPaw.11G106200 Carya illinoinensis HOM05D000087 ORTHO05D005735 1.4e-293 1013.4 829 67.2
Migut.H02249 Erythranthe guttata HOM05D000087 ORTHO05D005735 4.5e-292 1008.4 1155 49.3
Hund03336 Selenicereus undatus HOM05D000087 ORTHO05D005735 1.2e-289 1000.3 1156 51.9
MELO3C005812.2 Cucumis melo HOM05D000087 ORTHO05D005735 6.0e-289 998.0 1299 47.1
Sc01g0010950 Simmondsia chinensis HOM05D000087 ORTHO05D005735 2.4e-285 986.1 1164 50.0
Phvul.011G167550 Phaseolus vulgaris HOM05D000087 ORTHO05D005735 6.5e-283 978.0 984 54.3
Cc08_g17160 Coffea canephora HOM05D000087 ORTHO05D005735 1.4e-277 960.3 1179 48.3
SGA_v2.0_scaffold123G33449 Striga asiatica HOM05D000087 ORTHO05D005735 6.9e-277 958.0 1294 45.4
Solyc07g008450.3 Solanum lycopersicum HOM05D000087 ORTHO05D005735 1.2e-273 947.2 1052 50.8
Sopen07g004380 Solanum pennellii HOM05D000087 ORTHO05D005735 4.6e-273 945.3 1052 50.6
Lsat_1_v5_gn_3_13301 Lactuca sativa HOM05D000087 ORTHO05D005735 1.4e-272 943.7 1152 48.2
CAN.G1548.2 Capsicum annuum HOM05D000087 ORTHO05D005735 2.8e-270 936.0 1059 50.3
Peaxi162Scf00046g00228 Petunia axillaris HOM05D000087 ORTHO05D005735 2.0e-268 929.9 1056 49.9
Aa31LG6G16960 Aethionema arabicum HOM05D000087 ORTHO05D005735 9.4e-266 921.0 1163 48.2
ATR0579G142 Amborella trichopoda HOM05D000087 ORTHO05D005735 6.1e-265 918.3 1167 46.7
MBI04_g04806_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 8.8e-264 914.4 1146 48.1
Thhalv10024269m.g Eutrema salsugineum HOM05D000087 ORTHO05D005735 1.0e-259 901.0 1153 47.4
arahy.Tifrunner.gnm1.ann1.0XGN9Z Arachis hypogaea HOM05D000087 ORTHO05D005735 8.8e-256 887.9 1194 47.2
Nitab4.5_0007502g0010 Nicotiana tabacum HOM05D000087 ORTHO05D005735 1.5e-255 887.1 1055 48.2
Nitab4.5_0000491g0190 Nicotiana tabacum HOM05D000087 ORTHO05D005735 1.9e-250 870.2 1059 48.3
Zm00001eb416210 Zea mays HOM05D000087 ORTHO05D005735 5.6e-234 815.5 1157 43.0
FAN18G0494 Fragaria x ananassa HOM05D000087 ORTHO05D005735 2.8e-233 813.1 1014 50.2
arahy.Tifrunner.gnm1.ann1.DH86LW Arachis hypogaea HOM05D000087 ORTHO05D005735 4.6e-228 795.8 1270 41.5
vmacro08519 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 3.9e-227 792.7 865 53.8
Aqoxy5G04397 Aquilegia oxysepala HOM05D000087 ORTHO05D005735 1.1e-200 704.9 868 48.4
DCAR_010123 Daucus carota HOM05D000087 ORTHO05D005735 3.1e-200 703.4 854 48.0
CDE02G0276 Ceratophyllum demersum HOM05D000087 ORTHO05D005735 2.2e-190 670.6 945 45.0
Atru.chr9.2610 Acer truncatum HOM05D000087 ORTHO05D005735 6.2e-185 652.5 506 68.8
Glyma.06G180700 Glycine max HOM05D000087 ORTHO05D005735 1.4e-184 651.4 616 57.6
Mapoly0043s0141 Marchantia polymorpha HOM05D000087 ORTHO05D005735 2.3e-179 634.0 997 40.1
Hma1.2p1_0198F.1_g085370 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 1.0e-171 608.6 595 56.3
Pp3c3_37190 Physcomitrium patens HOM05D000087 ORTHO05D005735 2.0e-159 567.8 1127 33.7
SMO367G1062 Selaginella moellendorffii HOM05D000087 ORTHO05D005735 4.5e-159 566.6 1149 34.9
Cpa.g.sc37.117 Carica papaya HOM05D000087 ORTHO05D005735 6.5e-158 562.8 603 54.1
MD14G1143100 Malus domestica HOM05D000087 ORTHO05D005735 8.8e-155 552.4 550 57.5
VMungo1127G0184 Vigna mungo HOM05D000087 ORTHO05D005735 2.6e-154 550.8 519 58.0
COL.COLO4_10863 Corchorus olitorius HOM05D000087 ORTHO05D005735 6.1e-148 529.6 1156 34.2
HPP92_028198 Vanilla planifolia HOM05D000087 ORTHO05D005735 5.3e-144 516.5 765 40.8
HPP92_008913 Vanilla planifolia HOM05D000087 ORTHO05D005735 1.0e-142 512.3 629 46.3
CARHR143600 Cardamine hirsuta HOM05D000087 ORTHO05D005735 1.4e-131 475.3 468 56.0
Ca_16291_v3 Cicer arietinum L. HOM05D000087 ORTHO05D005735 5.7e-130 469.9 592 47.8
Glyma.06G181000 Glycine max HOM05D000087 ORTHO05D005735 7.2e-125 453.0 546 48.5
Os08g0152900 Oryza sativa ssp. japonica HOM05D000087 ORTHO05D005735 2.2e-113 414.8 541 44.9
Oeu019648.1 Olea europaea HOM05D000087 ORTHO05D005735 3.1e-107 394.4 505 46.9
CBR_g3175 Chara braunii HOM05D000087 ORTHO05D005735 1.2e-92 345.9 775 33.3
Duzib084G1107 Durio zibethinus HOM05D000087 ORTHO05D005735 2.4e-91 341.7 422 49.1
MD14G1142900 Malus domestica HOM05D000087 ORTHO05D005735 2.5e-85 321.6 263 67.7
vmacro08520 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 9.0e-83 313.2 421 45.6
SEGI_15816 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 1.7e-81 308.9 384 48.4
AL8G10020 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 1.1e-59 236.5 253 52.2
CSS0029196 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 2.5e-56 225.3 175 69.7
MCO07G377 Micromonas commoda HOM05D000087 ORTHO05D005735 2.7e-55 221.9 1180 23.8
SEGI_26992 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 3.3e-53 214.9 258 46.1
Duzib084G0823 Durio zibethinus HOM05D000087 ORTHO05D005735 4.1e-51 208.0 127 79.5
Cpa.g.sc363.3 Carica papaya HOM05D000087 ORTHO05D005735 1.4e-48 199.5 123 81.3
SalBow4G1355 Salvia bowleyana HOM05D000087 ORTHO05D005735 3.0e-46 191.8 353 36.5
CiPaw.11G106300 Carya illinoinensis HOM05D000087 ORTHO05D005735 5.1e-46 191.0 255 43.1
MD14G1142800 Malus domestica HOM05D000087 ORTHO05D005735 5.3e-43 181.0 246 44.7
AUR62009162 Chenopodium quinoa HOM05D000087 ORTHO05D005735 2.6e-42 178.7 255 44.3
CSS0034403 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 8.8e-38 163.7 243 45.7
CARHR293880 Cardamine hirsuta HOM05D000087 ORTHO05D005735 3.3e-37 161.8 123 63.4
CSS0007327 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 4.4e-37 161.4 251 44.2
FAN13G3301 Fragaria x ananassa HOM05D000087 ORTHO05D005735 1.0e-33 150.2 87 81.6
HPP92_028197 Vanilla planifolia HOM05D000087 ORTHO05D005735 5.5e-32 144.4 119 63.0
Cre03.g166600 Chlamydomonas reinhardtii HOM05D000087 ORTHO05D005735 2.8e-28 132.1 1150 20.7
SEGI_26806 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 1.3e-25 123.2 231 32.9
Oeu053260.1 Olea europaea HOM05D000087 ORTHO05D010194 3.8e-25 121.7 124 56.5
RcHm_v2.0_Chr7g0188121 Rosa chinensis HOM05D000087 ORTHO05D005735 2.1e-23 115.9 71 85.9
MBI04_g04804_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 3.3e-21 108.6 98 57.1
CARHR291390 Cardamine hirsuta HOM05D000087 ORTHO05D005735 1.7e-20 106.3 69 72.5
Duzib084G0615 Durio zibethinus HOM05D000087 ORTHO05D005735 7.0e-19 100.9 94 58.5
VMungo1127G1440 Vigna mungo HOM05D000087 ORTHO05D005735 9.1e-19 100.5 150 40.7
CSS0025060 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 2.9e-17 95.5 122 46.7
SEGI_26704 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 8.5e-17 94.0 110 45.5
VMungo1080G1218 Vigna mungo HOM05D000087 ORTHO05D005735 1.1e-16 93.6 104 47.1
CARHR293870 Cardamine hirsuta HOM05D000087 ORTHO05D005735 2.1e-15 89.4 138 42.8
VMungo0145G0001 Vigna mungo HOM05D000087 ORTHO05D005735 2.1e-15 89.4 103 44.7
CSS0033050 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 8.0e-15 87.4 76 56.6
CARHR046160 Cardamine hirsuta HOM05D000087 ORTHO05D005735 3.0e-14 85.5 61 68.9
MBI17_g33112_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 4.4e-13 81.6 75 52.0
Rhsim02G0255800 Rhododendron simsii HOM05D000087 ORTHO05D005735 6.3e-12 77.8 78 52.6
CSS0050207 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 1.8e-11 76.3 44 81.8
Hma1.2p1_0198F.1_g085360 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 5.4e-11 74.7 44 79.5
MBI04_g04802_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 5.4e-11 74.7 65 64.6
CSS0034676 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 1.2e-10 73.6 93 46.2
CARHR293860 Cardamine hirsuta HOM05D000087 ORTHO05D005735 4.5e-10 71.6 75 45.3
MBI04_g07085_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 1.0e-09 70.5 95 44.2
MBI04_g39794_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 2.9e-09 68.9 95 43.2
SalBow1G5284 Salvia bowleyana HOM05D000087 ORTHO05D005735 3.8e-09 68.6 73 54.8
RcHm_v2.0_Chr7g0188101 Rosa chinensis HOM05D000087 ORTHO05D005735 5.0e-09 68.2 84 40.5
SalBow7G0393 Salvia bowleyana HOM05D022560 ORTHO05D005735 1.6e-07 63.2 97 43.3
CARHR291380 Cardamine hirsuta HOM05D000087 ORTHO05D005735 8.0e-07 60.8 63 49.2
Medtr3g080660 Medicago truncatula HOM05D000087 ORTHO05D005735 1.0e-06 60.5 49 61.2
Ah.10g034360 Amaranthus hybridus HOM05D000087 ORTHO05D005735 1.4e-06 60.1 86 43.0
CARHR293850 Cardamine hirsuta HOM05D000087 ORTHO05D005735 1.4e-06 60.1 75 44.0
CSS0049190 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 2.3e-06 59.3 76 44.7
SalBow4G2543 Salvia bowleyana HOM05D003568 ORTHO05D004104 6.8e-06 57.8 64 50.0


User provided reference genes

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