Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0281100 Salix brachista HOM05D003841 ORTHO05D004602 8.6e-177 623.6 334 100.0
Potri.001G410100 Populus trichocarpa HOM05D003841 ORTHO05D004602 1.5e-149 533.1 332 87.3
Potri.011G130000 Populus trichocarpa HOM05D003841 ORTHO05D004602 1.7e-124 449.9 334 77.2
Sabra11G0117400 Salix brachista HOM05D003841 ORTHO05D004602 1.2e-82 310.8 278 66.9
Manes.15G079400 Manihot esculenta HOM05D003841 ORTHO05D004602 1.2e-77 294.3 335 51.9
CSS0048456 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 2.3e-68 263.5 334 50.6
QL08p014515 Quercus lobata HOM05D003841 ORTHO05D004602 2.3e-65 253.4 335 49.9
Dinv02831 Davidia involucrata HOM05D003841 ORTHO05D004602 4.0e-65 252.7 343 49.6
Ciclev10008955m.g Citrus clementina HOM05D003841 ORTHO05D004602 9.8e-64 248.1 334 48.5
Dinv22328 Davidia involucrata HOM05D003841 ORTHO05D004602 1.6e-61 240.7 347 47.8
TWI39G0875 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 4.6e-61 239.2 342 49.4
Actinidia35303 Actinidia chinensis HOM05D003841 ORTHO05D004602 2.3e-60 236.9 360 48.3
Duzib213G0276 Durio zibethinus HOM05D003841 ORTHO05D004602 1.1e-59 234.6 341 46.9
TAR271G0006 Trochodendron aralioides HOM05D003841 ORTHO05D004602 1.4e-57 227.6 350 45.1
TAR271G0005 Trochodendron aralioides HOM05D003841 ORTHO05D004602 1.5e-56 224.2 350 44.9
CiPaw.12G124700 Carya illinoinensis HOM05D003841 ORTHO05D004602 3.4e-56 223.0 334 46.1
TWI38G0390 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 1.7e-55 220.7 361 45.4
CSS0046033 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 3.8e-55 219.5 299 47.2
Thecc.07G059100 Theobroma cacao HOM05D003841 ORTHO05D004602 4.9e-55 219.2 343 44.6
COL.COLO4_09535 Corchorus olitorius HOM05D003841 ORTHO05D004602 1.1e-54 218.0 344 43.9
Lj1A861T58 Lonicera japonica HOM05D003841 ORTHO05D004602 3.2e-54 216.5 339 44.2
TAR627G0073 Trochodendron aralioides HOM05D003841 ORTHO05D004602 4.1e-54 216.1 348 42.5
Duzib170G0031 Durio zibethinus HOM05D003841 ORTHO05D004602 7.1e-54 215.3 345 44.1
Cc05_g12980 Coffea canephora HOM05D003841 ORTHO05D004602 2.1e-53 213.8 342 43.3
Gohir.A11G281600 Gossypium hirsutum HOM05D003841 ORTHO05D004602 4.6e-53 212.6 346 42.5
Cfa020471 Carpinus fangiana HOM05D003841 ORTHO05D004602 1.3e-52 211.1 337 45.1
Gorai.007G317200 Gossypium raimondii HOM05D003841 ORTHO05D004602 3.0e-52 209.9 346 43.1
Gohir.D11G294200 Gossypium hirsutum HOM05D003841 ORTHO05D004602 1.1e-51 208.0 346 42.5
RhsimUnG0254800 Rhododendron simsii HOM05D003841 ORTHO05D004602 9.6e-51 204.9 354 41.8
Nitab4.5_0000552g0100 Nicotiana tabacum HOM05D003841 ORTHO05D004602 1.2e-50 204.5 344 45.1
Lj8A163G39 Lonicera japonica HOM05D003841 ORTHO05D004602 1.8e-49 200.7 338 43.8
AUR62041149 Chenopodium quinoa HOM05D003841 ORTHO05D004602 4.0e-49 199.5 336 43.2
Haze_09572 Corylus avellana HOM05D003841 ORTHO05D004602 5.2e-49 199.1 362 42.5
EL10Ac4g08014 Beta vulgaris HOM05D003841 ORTHO05D004602 8.9e-49 198.4 332 44.3
AUR62029272 Chenopodium quinoa HOM05D003841 ORTHO05D004602 2.0e-48 197.2 332 43.4
Rhsim06G0190700 Rhododendron simsii HOM05D003841 ORTHO05D004602 2.0e-48 197.2 336 42.0
Rhsim06G0189000 Rhododendron simsii HOM05D003841 ORTHO05D004602 2.6e-48 196.8 336 42.0
Sabra16G0276700 Salix brachista HOM05D006433 ORTHO05D005382 2.6e-48 196.8 102 99.0
Gohir.A13G142900 Gossypium hirsutum HOM05D003841 ORTHO05D004602 4.4e-48 196.1 339 41.9
Hund23360 Selenicereus undatus HOM05D003841 ORTHO05D004602 4.4e-48 196.1 334 40.7
arahy.Tifrunner.gnm1.ann1.GYU1HX Arachis hypogaea HOM05D003841 ORTHO05D004602 1.3e-47 194.5 336 41.4
Gohir.D13G147500 Gossypium hirsutum HOM05D003841 ORTHO05D004602 2.2e-47 193.7 339 41.9
Gorai.013G165300 Gossypium raimondii HOM05D003841 ORTHO05D004602 2.2e-47 193.7 339 41.6
Nn1g06911 Nelumbo nucifera HOM05D003841 ORTHO05D004602 2.2e-47 193.7 354 42.4
Lalb_Chr22g0357311 Lupinus albus HOM05D003841 ORTHO05D004602 2.9e-47 193.4 340 41.8
MD11G1230100 Malus domestica HOM05D003841 ORTHO05D004602 1.4e-46 191.0 339 38.6
Psat7g160280 Pisum sativum HOM05D003841 ORTHO05D004602 1.9e-46 190.7 332 40.4
Nitab4.5_0003052g0050 Nicotiana tabacum HOM05D003841 ORTHO05D004602 2.1e-45 187.2 340 45.6
GSVIVG01014549001 Vitis vinifera HOM05D003841 ORTHO05D004602 2.1e-45 187.2 214 52.8
Peaxi162Scf01365g00027 Petunia axillaris HOM05D003841 ORTHO05D004602 2.7e-45 186.8 347 43.5
vmacro11787 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 2.7e-45 186.8 365 40.3
arahy.Tifrunner.gnm1.ann1.SIF99T Arachis hypogaea HOM05D003841 ORTHO05D004602 3.5e-45 186.4 336 40.8
CANSAT11G1059 Cannabis sativa HOM05D003841 ORTHO05D004602 1.7e-44 184.1 336 39.9
Sopen07g032000 Solanum pennellii HOM05D003841 ORTHO05D004602 3.0e-44 183.3 353 41.9
MD03G1215500 Malus domestica HOM05D003841 ORTHO05D004602 1.1e-43 181.4 338 39.6
TPR.G34029 Trifolium pratense HOM05D003841 ORTHO05D004602 1.1e-43 181.4 338 40.5
Actinidia10692 Actinidia chinensis HOM05D003841 ORTHO05D004602 1.9e-43 180.6 284 46.1
Prupe.4G197300 Prunus persica HOM05D003841 ORTHO05D004602 2.5e-43 180.3 334 38.9
Solyc07g063870.3 Solanum lycopersicum HOM05D003841 ORTHO05D004602 4.3e-43 179.5 351 41.9
Ah.06g183230 Amaranthus hybridus HOM05D003841 ORTHO05D004602 1.3e-42 177.9 334 41.6
ClCG05G014990 Citrullus lanatus HOM05D003841 ORTHO05D004602 2.8e-42 176.8 348 39.4
Lj3g0010893 Lotus japonicus HOM05D003841 ORTHO05D004602 2.8e-42 176.8 349 39.3
Eucgr.F03390 Eucalyptus grandis HOM05D003841 ORTHO05D004602 3.6e-42 176.4 347 41.8
FAN11G1553 Fragaria x ananassa HOM05D003841 ORTHO05D004602 3.6e-42 176.4 331 40.5
FvH4_3g21510 Fragaria vesca HOM05D003841 ORTHO05D004602 1.8e-41 174.1 335 40.0
Medtr4g081550 Medicago truncatula HOM05D003841 ORTHO05D004602 1.8e-41 174.1 333 37.8
Oeu005438.1 Olea europaea HOM05D003841 ORTHO05D004602 1.8e-41 174.1 336 39.9
Lalb_Chr01g0006261 Lupinus albus HOM05D003841 ORTHO05D004602 2.4e-41 173.7 332 40.1
vmacro09595 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 2.4e-41 173.7 470 34.5
Ca_18832_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 4.0e-41 172.9 337 38.3
Ca_30091_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 4.0e-41 172.9 337 38.3
PGSC0003DMG400019273 Solanum tuberosum HOM05D003841 ORTHO05D000515 4.0e-41 172.9 325 41.8
Aa31LG3G10490 Aethionema arabicum HOM05D003841 ORTHO05D004602 5.3e-41 172.6 337 41.2
MELO3C018156.2 Cucumis melo HOM05D003841 ORTHO05D004602 2.6e-40 170.2 341 38.1
THA.LOC104799894 Tarenaya hassleriana HOM05D003841 ORTHO05D004602 9.9e-40 168.3 340 42.1
Actinidia05162 Actinidia chinensis HOM05D003841 ORTHO05D004602 1.3e-39 167.9 365 38.6
FAN21G0547 Fragaria x ananassa HOM05D003841 ORTHO05D004602 1.7e-39 167.5 335 39.4
PSO541G4862 Papaver somniferum HOM05D003841 ORTHO05D004602 8.4e-39 165.2 353 37.1
Sed0013156 Sechium edule HOM05D003841 ORTHO05D004602 1.4e-38 164.5 340 36.5
Lsat_1_v5_gn_7_107821 Lactuca sativa HOM05D003841 ORTHO05D004602 5.4e-38 162.5 339 38.6
VMungo1127G0850 Vigna mungo HOM05D003841 ORTHO05D004602 7.1e-38 162.2 332 38.6
DCAR_022502 Daucus carota HOM05D003841 ORTHO05D004602 9.3e-38 161.8 334 38.6
CsaV3_3G022650 Cucumis sativus L. HOM05D003841 ORTHO05D004602 1.2e-37 161.4 344 37.5
HanXRQChr11g0332121 Helianthus annuus HOM05D003841 ORTHO05D004602 2.1e-37 160.6 345 37.4
PSO675G5063 Papaver somniferum HOM05D003841 ORTHO05D004602 2.1e-37 160.6 352 36.9
FAN25G3758 Fragaria x ananassa HOM05D003841 ORTHO05D004602 3.5e-37 159.8 330 38.8
AL8G29910 Arabidopsis lyrata HOM05D003841 ORTHO05D004602 6.0e-37 159.1 340 38.2
Glyma.06G262900 Glycine max HOM05D003841 ORTHO05D004602 6.0e-37 159.1 337 39.8
Phvul.011G146700 Phaseolus vulgaris HOM05D003841 ORTHO05D004602 1.3e-36 157.9 339 39.2
Migut.H01878 Erythranthe guttata HOM05D003841 ORTHO05D004602 1.8e-36 157.5 340 36.5
Oeu052335.1 Olea europaea HOM05D003841 ORTHO05D004602 2.3e-36 157.1 341 37.0
Lj3g0010292 Lotus japonicus HOM05D003841 ORTHO05D004602 5.1e-36 156.0 334 36.8
ECA236G3199 Erigeron canadensis HOM05D003841 ORTHO05D004602 1.1e-35 154.8 338 37.0
DCAR_010006 Daucus carota HOM05D003841 ORTHO05D004602 2.5e-35 153.7 333 37.2
SGA_v2.0_scaffold9G05000 Striga asiatica HOM05D003841 ORTHO05D004602 2.5e-35 153.7 332 37.3
FAN16G3040 Fragaria x ananassa HOM05D003841 ORTHO05D004602 3.3e-35 153.3 334 38.6
Carub.0008s1482 Capsella rubella HOM05D003841 ORTHO05D004602 7.4e-35 152.1 341 37.5
Glyma.12G139800 Glycine max HOM05D003841 ORTHO05D004602 2.1e-34 150.6 344 36.9
CARHR267820 Cardamine hirsuta HOM05D003841 ORTHO05D004602 2.8e-34 150.2 341 37.8
Hund02157 Selenicereus undatus HOM05D003841 ORTHO05D004602 2.8e-34 150.2 325 38.5
MSTRG.6876 Avicennia marina HOM05D003841 ORTHO05D004602 4.8e-34 149.4 330 34.8
AT5G54540 Arabidopsis thaliana HOM05D003841 ORTHO05D004602 2.4e-33 147.1 341 37.0
Sp6g16510 Schrenkiella parvula HOM05D003841 ORTHO05D004602 1.5e-32 144.4 346 36.1
Migut.M01831 Erythranthe guttata HOM05D003841 ORTHO05D004602 2.0e-32 144.1 330 35.5
Thhalv10014255m.g Eutrema salsugineum HOM05D003841 ORTHO05D004602 5.8e-32 142.5 339 36.6
Glyma.13G284700 Glycine max HOM05D003841 ORTHO05D004602 7.6e-32 142.1 336 37.8
Sc03g0009430 Simmondsia chinensis HOM05D003841 ORTHO05D004602 1.3e-31 141.4 335 35.5
BraA10t43276Z Brassica rapa HOM05D003841 ORTHO05D004602 1.1e-30 138.3 336 37.8
Cpa.g.sc80.126 Carica papaya HOM05D003841 ORTHO05D004602 1.9e-30 137.5 189 52.4
Glyma.12G216500 Glycine max HOM05D003841 ORTHO05D004602 5.5e-30 136.0 335 35.8
SalBow7G4379 Salvia bowleyana HOM05D003841 ORTHO05D004602 7.1e-30 135.6 341 37.0
A02p10210 Brassica napus HOM05D003841 ORTHO05D004602 9.3e-30 135.2 336 36.3
TAR623G1765 Trochodendron aralioides HOM05D003841 ORTHO05D004602 9.3e-30 135.2 344 34.3
BcaB08g35813 Brassica carinata HOM05D003841 ORTHO05D004602 1.2e-29 134.8 336 37.2
A10p11770 Brassica napus HOM05D003841 ORTHO05D004602 1.2e-29 134.8 336 36.9
Aqoxy1G03844 Aquilegia oxysepala HOM05D003841 ORTHO05D004602 1.3e-28 131.3 356 36.0
BcaC04g20329 Brassica carinata HOM05D003841 ORTHO05D004602 3.9e-28 129.8 336 35.7
MBI18_g38396_MAGBIO Magnolia biondii HOM05D003841 ORTHO05D004602 5.1e-28 129.4 341 33.7
C02p16910 Brassica napus HOM05D003841 ORTHO05D004602 1.5e-27 127.9 337 36.8
C09p44880 Brassica napus HOM05D003841 ORTHO05D004602 4.3e-27 126.3 337 36.5
MSTRG.14400 Avicennia marina HOM05D003841 ORTHO05D004602 5.6e-27 125.9 304 36.5
BolC9t57359H Brassica oleracea HOM05D003841 ORTHO05D004602 9.6e-27 125.2 336 36.3
Zm00001eb413050 Zea mays HOM05D003841 ORTHO05D004602 9.6e-27 125.2 339 31.9
RcHm_v2.0_Chr5g0036951 Rosa chinensis HOM05D003841 ORTHO05D004602 1.6e-26 124.4 245 39.6
arahy.Tifrunner.gnm1.ann1.SKE74K Arachis hypogaea HOM05D003841 ORTHO05D004602 6.2e-26 122.5 349 34.7
SGA_v2.0_scaffold70G23570 Striga asiatica HOM05D003841 ORTHO05D004602 2.4e-25 120.6 331 33.8
Zm00001eb171810 Zea mays HOM05D003841 ORTHO05D004602 2.4e-25 120.6 339 31.0
BraA02t06092Z Brassica rapa HOM05D003841 ORTHO05D004602 3.1e-25 120.2 342 35.1
HPP92_004148 Vanilla planifolia HOM05D003841 ORTHO05D004602 4.0e-25 119.8 344 33.4
Gorai.007G317300 Gossypium raimondii HOM05D003841 ORTHO05D004602 1.2e-24 118.2 289 35.6
PSO675G0068 Papaver somniferum HOM05D003841 ORTHO05D004602 1.2e-24 118.2 343 35.6
Gohir.D11G294233 Gossypium hirsutum HOM05D003841 ORTHO05D004602 2.6e-24 117.1 289 36.0
arahy.Tifrunner.gnm1.ann1.SRRR95 Arachis hypogaea HOM05D003841 ORTHO05D004602 4.5e-24 116.3 351 33.6
CAN.G64.40 Capsicum annuum HOM05D003841 ORTHO05D004602 5.8e-24 115.9 144 49.3
DCAR_008683 Daucus carota HOM05D003841 ORTHO05D004602 1.7e-23 114.4 339 33.6
Gohir.A11G281650 Gossypium hirsutum HOM05D003841 ORTHO05D004602 3.2e-22 110.2 284 34.2
ATR0804G047 Amborella trichopoda HOM05D003841 ORTHO05D004602 7.1e-22 109.0 353 32.6
Cfa021072 Carpinus fangiana HOM05D003841 ORTHO05D004602 4.6e-21 106.3 122 54.9
Os08g0179900 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D004602 4.6e-21 106.3 269 33.5
HPP92_005894 Vanilla planifolia HOM05D003841 ORTHO05D004602 7.9e-21 105.5 336 32.4
unitig_746.g26819 Utricularia gibba HOM05D003841 ORTHO05D004602 5.1e-20 102.8 315 34.6
CDE05G3666 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 4.3e-19 99.8 337 29.1
Cpa.g.c47761 Carica papaya HOM05D003841 ORTHO05D004602 2.1e-18 97.4 121 55.4
BcaB05g22143 Brassica carinata HOM05D003841 ORTHO05D004602 4.8e-18 96.3 328 30.2
ClCG10G006140 Citrullus lanatus HOM05D003841 ORTHO05D004602 6.3e-18 95.9 290 29.7
PSO541G5517 Papaver somniferum HOM05D003841 ORTHO05D004602 5.3e-17 92.8 249 34.5
PGR031G0981 Punica granatum HOM05D003841 ORTHO05D004602 5.3e-17 92.8 152 36.8
PSO339G6399 Papaver somniferum HOM05D003841 ORTHO05D004602 9.0e-17 92.0 361 30.5
PSO384G0968 Papaver somniferum HOM05D003841 ORTHO05D004602 9.0e-17 92.0 359 30.4
CAN.G952.3 Capsicum annuum HOM05D003841 ORTHO05D004602 5.9e-16 89.4 176 40.9
unitig_899.g15555 Utricularia gibba HOM05D003841 ORTHO05D004602 7.6e-16 89.0 338 30.5
CAN.G1160.11 Capsicum annuum HOM05D003841 ORTHO05D004602 2.9e-15 87.0 229 34.5
MELO3C016604.2 Cucumis melo HOM05D003841 ORTHO05D004602 3.8e-15 86.7 353 28.3
Sed0016497 Sechium edule HOM05D003841 ORTHO05D004602 3.8e-15 86.7 241 32.4
CAN.G22.51 Capsicum annuum HOM05D000121 ORTHO05D000102 8.5e-15 85.5 153 39.9
CDE05G3612 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 2.5e-14 84.0 339 27.1
Oeu052334.1 Olea europaea HOM05D003841 ORTHO05D004602 2.1e-13 80.9 252 29.8
Lsat_1_v5_gn_2_59361 Lactuca sativa HOM05D003841 ORTHO05D004602 2.3e-12 77.4 179 34.1
Ah.04g165190 Amaranthus hybridus HOM05D003841 ORTHO05D004602 3.0e-12 77.0 218 32.6
Oeu052339.1 Olea europaea HOM05D003841 ORTHO05D004602 1.1e-11 75.1 214 33.2
CsaV3_3G005690 Cucumis sativus L. HOM05D003841 ORTHO05D004602 8.2e-10 68.9 352 26.4
Sed0013484 Sechium edule HOM05D003841 ORTHO05D004602 9.1e-09 65.5 279 26.2
Oeu052338.1 Olea europaea HOM05D003841 ORTHO05D004602 1.2e-08 65.1 231 27.7
Mapoly0042s0124 Marchantia polymorpha HOM05D002766 ORTHO05D002809 1.7e-07 61.2 381 27.6
Prupe.5G070000 Prunus persica HOM05D003841 ORTHO05D004602 3.8e-07 60.1 147 38.8
VMungo1027G0001 Vigna mungo HOM05D003841 ORTHO05D004602 5.0e-07 59.7 199 29.6
Phvul.005G089400 Phaseolus vulgaris HOM05D003841 ORTHO05D004602 5.5e-06 56.2 60 45.0


User provided reference genes

Program Settings