Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 2.0e-178 629.0 324 100.0
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 3.4e-170 601.7 324 94.1
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 9.7e-141 503.8 328 78.4
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 3.2e-128 462.2 328 72.6
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 1.1e-125 453.8 334 73.1
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 2.6e-125 452.6 334 72.2
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 9.7e-125 450.7 331 72.2
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 4.1e-123 445.3 334 72.2
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 5.9e-122 441.4 332 67.2
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 1.1e-120 437.2 333 70.3
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 5.5e-120 434.9 334 69.5
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 1.8e-118 429.9 335 68.4
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 1.8e-118 429.9 332 68.4
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 5.2e-118 428.3 328 67.4
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 3.3e-117 425.6 329 69.6
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 5.7e-117 424.9 334 68.9
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 1.7e-116 423.3 334 67.4
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 5.3e-115 418.3 333 67.6
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 3.5e-114 415.6 326 66.6
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 2.9e-113 412.5 335 65.4
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 5.0e-113 411.8 326 65.3
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 5.0e-113 411.8 333 65.2
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 1.1e-112 410.6 334 65.6
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 1.9e-112 409.8 332 64.8
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 1.9e-112 409.8 334 64.1
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 3.2e-112 409.1 333 64.6
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 1.6e-111 406.8 334 63.2
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 2.7e-111 406.0 332 66.6
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 6.1e-111 404.8 333 64.0
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 3.0e-110 402.5 335 64.5
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 8.8e-110 401.0 340 64.1
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 2.0e-109 399.8 326 63.5
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 2.6e-109 399.4 334 65.6
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 4.4e-109 398.7 329 67.8
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 7.5e-109 397.9 335 64.8
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 7.5e-109 397.9 335 65.4
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 2.2e-108 396.4 335 63.0
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 4.8e-108 395.2 335 63.6
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 6.3e-108 394.8 338 64.8
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 6.3e-108 394.8 336 62.5
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 6.3e-108 394.8 336 62.2
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 8.3e-108 394.4 330 64.2
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 3.1e-107 392.5 336 64.0
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 9.1e-107 391.0 340 62.6
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 1.3e-105 387.1 339 64.6
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 1.3e-105 387.1 336 61.3
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 3.8e-105 385.6 273 72.2
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 1.1e-104 384.0 335 60.9
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 1.1e-104 384.0 372 59.1
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 7.2e-104 381.3 273 69.6
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 7.2e-104 381.3 332 61.4
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 1.6e-103 380.2 393 54.5
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 3.6e-103 379.0 343 60.6
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 4.7e-103 378.6 328 64.3
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 1.0e-102 377.5 338 62.7
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 2.3e-102 376.3 337 62.3
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 5.2e-102 375.2 272 69.9
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 5.2e-102 375.2 327 63.6
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 1.2e-101 374.0 331 60.7
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.2e-101 374.0 332 63.3
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 4.4e-101 372.1 334 61.7
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 7.5e-101 371.3 334 60.2
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 2.2e-100 369.8 292 63.4
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 3.7e-100 369.0 332 60.5
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 3.7e-100 369.0 333 60.7
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 2.4e-99 366.3 329 60.5
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 9.1e-99 364.4 335 62.4
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 2.0e-98 363.2 329 59.3
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 2.0e-98 363.2 329 59.3
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 2.0e-98 363.2 329 59.3
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 3.5e-98 362.5 341 60.1
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 5.9e-98 361.7 334 57.5
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 7.7e-98 361.3 376 54.8
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 7.7e-98 361.3 331 59.8
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 7.7e-98 361.3 334 56.6
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 1.7e-97 360.1 338 57.4
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 2.3e-97 359.8 342 58.5
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 8.6e-97 357.8 328 57.9
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 4.2e-96 355.5 334 57.2
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 7.2e-96 354.8 330 55.8
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 7.2e-96 354.8 363 58.1
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 3.6e-95 352.4 340 56.8
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 4.7e-95 352.1 331 57.4
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 6.1e-95 351.7 338 56.8
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 6.1e-95 351.7 274 66.1
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 6.1e-95 351.7 335 57.3
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 1.4e-94 350.5 335 58.5
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 1.8e-94 350.1 336 57.4
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 2.3e-94 349.7 332 56.6
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 6.8e-94 348.2 339 57.2
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 1.2e-93 347.4 337 56.7
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 1.2e-93 347.4 338 59.2
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 3.4e-93 345.9 330 57.6
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 3.4e-93 345.9 330 57.6
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 6.3e-92 341.7 332 57.8
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 1.1e-91 340.9 328 57.0
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 2.4e-91 339.7 315 57.1
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 2.4e-91 339.7 316 57.0
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 4.1e-91 339.0 328 55.8
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 5.4e-91 338.6 329 57.1
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 7.0e-91 338.2 331 57.7
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 2.0e-90 336.7 332 56.6
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 7.8e-90 334.7 339 56.6
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 2.3e-89 333.2 331 55.0
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 5.0e-89 332.0 350 53.4
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 1.6e-87 327.0 339 55.5
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 3.6e-87 325.9 339 55.5
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 2.3e-86 323.2 331 55.3
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 6.8e-86 321.6 333 53.5
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 8.9e-86 321.2 324 56.5
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 1.2e-85 320.9 331 53.8
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 5.8e-85 318.5 368 51.9
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 5.8e-85 318.5 330 56.1
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 9.8e-85 317.8 247 70.4
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 1.7e-84 317.0 324 55.9
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 9.2e-83 311.2 342 52.6
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 1.6e-82 310.5 221 72.4
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 2.7e-82 309.7 307 55.0
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 6.0e-82 308.5 338 53.8
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 3.0e-81 306.2 325 51.7
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 5.0e-81 305.4 337 52.5
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 1.9e-80 303.5 328 54.6
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 2.1e-79 300.1 341 50.4
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 6.2e-79 298.5 329 52.9
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 1.1e-78 297.7 341 49.9
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 2.3e-78 296.6 341 49.6
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 2.6e-77 293.1 278 58.3
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 3.4e-77 292.7 297 55.9
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 3.4e-77 292.7 249 62.7
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 1.7e-76 290.4 241 61.8
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 6.4e-76 288.5 326 51.2
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 1.9e-75 287.0 235 66.8
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 5.4e-75 285.4 331 51.4
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 3.5e-74 282.7 317 52.7
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 6.8e-70 268.5 179 74.9
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 2.0e-69 266.9 304 53.3
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 9.2e-67 258.1 300 52.3
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 1.6e-63 247.3 260 54.2
Atru.chr2.3668 Acer truncatum HOM05D004073 ORTHO05D004785 2.4e-62 243.4 165 73.3
arahy.Tifrunner.gnm1.ann1.0WG7ZM Arachis hypogaea HOM05D004073 ORTHO05D004785 1.1e-56 224.6 177 64.4
arahy.Tifrunner.gnm1.ann1.W5ZFFA Arachis hypogaea HOM05D004073 ORTHO05D004785 1.9e-56 223.8 164 66.5
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 4.8e-55 219.2 330 43.3
Nn1g03214 Nelumbo nucifera HOM05D004073 ORTHO05D004785 2.4e-54 216.9 216 58.8
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 4.0e-54 216.1 234 49.6
Gohir.D06G153600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.3e-52 211.1 204 61.3
Gorai.010G179600 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.1e-51 208.0 182 61.5
Gorai.013G151000 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.4e-51 206.8 204 61.3
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 2.4e-51 206.8 302 44.4
Gorai.002G215300 Gossypium raimondii HOM05D004073 ORTHO05D004785 3.5e-50 203.0 204 60.8
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 1.5e-48 197.6 324 40.7
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 4.8e-47 192.6 234 47.4
MBI16_g14390_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 8.4e-44 181.8 148 58.1
MBI16_g43434_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.9e-40 170.6 128 63.3
Actinidia37162 Actinidia chinensis HOM05D004073 ORTHO05D004785 5.6e-40 169.1 292 43.5
TPR.G15593 Trifolium pratense HOM05D004073 ORTHO05D004785 6.2e-39 165.6 136 59.6
Zm00001eb409570 Zea mays HOM05D004073 ORTHO05D004785 2.9e-36 156.8 210 47.6
Gohir.A04G002800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 4.9e-36 156.0 134 62.7
SEGI_22606 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 7.1e-35 152.1 202 50.5
TPR.G31066 Trifolium pratense HOM05D004073 ORTHO05D004785 8.7e-33 145.2 141 53.2
TAR626G1493 Trochodendron aralioides HOM05D004073 ORTHO05D004785 8.7e-33 145.2 142 58.5
SEGI_11688 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 1.1e-32 144.8 127 57.5
Thecc.07G016200 Theobroma cacao HOM05D004073 ORTHO05D004785 3.8e-28 129.8 98 64.3
Medtr4g055205 Medicago truncatula HOM05D004073 ORTHO05D004785 1.0e-25 121.7 104 56.7
CBR_g33924 Chara braunii HOM05D004073 ORTHO05D004785 2.0e-21 107.5 219 34.2
HPP92_020450 Vanilla planifolia HOM05D004073 ORTHO05D004785 3.0e-17 93.6 90 50.0
GSVIVG01014652001 Vitis vinifera HOM05D004073 ORTHO05D004785 4.3e-16 89.7 59 72.9
PGSC0003DMG401021129 Solanum tuberosum HOM05D004073 ORTHO05D004785 1.1e-14 85.1 142 38.7
MBI19_g20151_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.3e-12 78.2 139 38.1
Lsat_1_v5_gn_1_76240 Lactuca sativa HOM05D004073 ORTHO05D004785 2.2e-12 77.4 60 68.3
PRCOL_00005800 Prasinoderma coloniale HOM05D004073 ORTHO05D004785 8.5e-12 75.5 254 28.0
VMungo1127G1263 Vigna mungo HOM05D004073 ORTHO05D004785 6.3e-07 59.3 55 54.5


User provided reference genes

Program Settings