Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0230000 Salix brachista HOM05D005889 ORTHO05D007495 2.9e-86 322.0 182 100.0
Potri.001G350500 Populus trichocarpa HOM05D005889 ORTHO05D007495 1.8e-75 286.2 183 85.2
Manes.17G118700 Manihot esculenta HOM05D005889 ORTHO05D007495 2.7e-47 192.6 194 63.4
Manes.15G180360 Manihot esculenta HOM05D005889 ORTHO05D007495 4.7e-44 181.8 195 61.5
MD17G1039100 Malus domestica HOM05D005889 ORTHO05D007495 1.3e-38 163.7 174 56.9
Cc07_g02540 Coffea canephora HOM05D005889 ORTHO05D007495 3.0e-38 162.5 195 61.0
THA.LOC104821069 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 3.0e-38 162.5 195 53.8
TAR371G1159 Trochodendron aralioides HOM05D005889 ORTHO05D007495 3.0e-38 162.5 183 55.2
Ciclev10012884m.g Citrus clementina HOM05D005889 ORTHO05D007495 3.9e-38 162.2 188 55.9
Hma1.2p1_0697F.1_g204970 Hydrangea macrophylla HOM05D005889 ORTHO05D007495 3.9e-38 162.2 118 73.7
Nn4g22882 Nelumbo nucifera HOM05D005889 ORTHO05D007495 8.6e-38 161.0 186 53.8
Actinidia06039 Actinidia chinensis HOM05D005889 ORTHO05D007495 1.9e-37 159.8 186 54.8
PGR083G2278 Punica granatum HOM05D005889 ORTHO05D007495 3.3e-37 159.1 146 63.0
Gohir.D07G225400 Gossypium hirsutum HOM05D005889 ORTHO05D007495 4.3e-37 158.7 156 66.7
Gorai.001G259800 Gossypium raimondii HOM05D005889 ORTHO05D007495 4.3e-37 158.7 156 66.7
CsaV3_3G042070 Cucumis sativus L. HOM05D005889 ORTHO05D007495 7.3e-37 157.9 185 51.9
Rhsim10G0026900 Rhododendron simsii HOM05D005889 ORTHO05D007495 1.2e-36 157.1 186 53.2
MELO3C009927.2 Cucumis melo HOM05D005889 ORTHO05D007495 2.1e-36 156.4 185 51.4
Thecc.04G004200 Theobroma cacao HOM05D005889 ORTHO05D007495 2.8e-36 156.0 158 65.2
MBI14_g19739_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 3.6e-36 155.6 123 76.4
TWI56G0856 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 4.7e-36 155.2 142 64.1
AUR62032095 Chenopodium quinoa HOM05D005889 ORTHO05D007495 8.1e-36 154.5 184 51.6
RcHm_v2.0_Chr2g0170581 Rosa chinensis HOM05D005889 ORTHO05D007495 8.1e-36 154.5 185 56.8
Sc20g0002790 Simmondsia chinensis HOM05D005889 ORTHO05D007495 1.1e-35 154.1 128 66.4
QL02p077702 Quercus lobata HOM05D005889 ORTHO05D007495 1.4e-35 153.7 173 55.5
SGA_v2.0_scaffold205G41723 Striga asiatica HOM05D005889 ORTHO05D007495 1.4e-35 153.7 192 53.6
Rhsim10G0026400 Rhododendron simsii HOM05D005889 ORTHO05D007495 1.8e-35 153.3 185 53.0
DCAR_011198 Daucus carota HOM05D005889 ORTHO05D007495 2.3e-35 152.9 179 56.4
Aqoxy3G03079 Aquilegia oxysepala HOM05D005889 ORTHO05D007495 3.1e-35 152.5 125 65.6
SalBow1G5017 Salvia bowleyana HOM05D005889 ORTHO05D007495 3.1e-35 152.5 116 74.1
Ah.16g106950 Amaranthus hybridus HOM05D005889 ORTHO05D007495 4.0e-35 152.1 180 52.8
CiPaw.03G035200 Carya illinoinensis HOM05D005889 ORTHO05D007495 4.0e-35 152.1 168 62.5
Nitab4.5_0001952g0130 Nicotiana tabacum HOM05D005889 ORTHO05D007495 6.8e-35 151.4 95 83.2
Atru.chr8.2424 Acer truncatum HOM05D005889 ORTHO05D007495 1.2e-34 150.6 194 50.5
Sed0023571 Sechium edule HOM05D005889 ORTHO05D007495 1.2e-34 150.6 182 50.5
Duzib147G1282 Durio zibethinus HOM05D005889 ORTHO05D007495 1.5e-34 150.2 146 65.8
CSS0022009 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 2.0e-34 149.8 116 70.7
CANSAT64G2621 Cannabis sativa HOM05D005889 ORTHO05D007495 2.6e-34 149.4 197 58.4
MSTRG.15501 Avicennia marina HOM05D005889 ORTHO05D007495 4.4e-34 148.7 148 64.2
CARHR198430 Cardamine hirsuta HOM05D005889 ORTHO05D007495 4.4e-34 148.7 189 49.7
Lsat_1_v5_gn_2_92760 Lactuca sativa HOM05D005889 ORTHO05D007495 5.8e-34 148.3 149 56.4
Sopen02g031900 Solanum pennellii HOM05D005889 ORTHO05D007495 5.8e-34 148.3 95 82.1
PGSC0003DMG400000508 Solanum tuberosum HOM05D005889 ORTHO05D007495 5.8e-34 148.3 95 82.1
Eucgr.J02175 Eucalyptus grandis HOM05D005889 ORTHO05D007495 9.9e-34 147.5 98 80.6
TWI12G0403 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 9.9e-34 147.5 179 54.7
Migut.K01361 Erythranthe guttata HOM05D005889 ORTHO05D007495 1.3e-33 147.1 94 81.9
Solyc02g087150.3 Solanum lycopersicum HOM05D005889 ORTHO05D007495 1.3e-33 147.1 95 81.1
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 1.7e-33 146.7 100 75.0
FvH4_6g50270 Fragaria vesca HOM05D005889 ORTHO05D007495 1.7e-33 146.7 180 52.2
FAN14G2248 Fragaria x ananassa HOM05D005889 ORTHO05D007495 1.7e-33 146.7 180 52.2
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 1.7e-33 146.7 142 62.7
CAN.G206.53 Capsicum annuum HOM05D005889 ORTHO05D007495 2.2e-33 146.4 95 82.1
A02p02770 Brassica napus HOM05D005889 ORTHO05D007495 2.9e-33 146.0 182 48.9
CANSAT64G0610 Cannabis sativa HOM05D005889 ORTHO05D007495 2.9e-33 146.0 197 57.4
FAN05G0142 Fragaria x ananassa HOM05D005889 ORTHO05D007495 2.9e-33 146.0 186 53.2
BcaNung03088 Brassica carinata HOM05D005889 ORTHO05D007495 6.4e-33 144.8 178 56.2
PSO832G3377 Papaver somniferum HOM05D005889 ORTHO05D007495 8.4e-33 144.4 183 51.4
Carub.0006s1306 Capsella rubella HOM05D005889 ORTHO05D007495 1.1e-32 144.1 193 48.7
FAN09G4317 Fragaria x ananassa HOM05D005889 ORTHO05D007495 1.1e-32 144.1 186 52.7
PSO063G7534 Papaver somniferum HOM05D005889 ORTHO05D007495 1.4e-32 143.7 186 49.5
Prupe.3G279900 Prunus persica HOM05D005889 ORTHO05D007495 1.4e-32 143.7 185 53.0
AT5G14910 Arabidopsis thaliana HOM05D005889 ORTHO05D007495 1.9e-32 143.3 195 46.7
Sed0001958 Sechium edule HOM05D005889 ORTHO05D007495 1.9e-32 143.3 186 47.3
BraA02t05248Z Brassica rapa HOM05D005889 ORTHO05D007495 2.4e-32 142.9 182 53.3
Peaxi162Scf00129g00825 Petunia axillaris HOM05D005889 ORTHO05D007495 2.4e-32 142.9 92 81.5
Cfa007463 Carpinus fangiana HOM05D001690 ORTHO05D002627 3.2e-32 142.5 163 60.7
FAN02G1209 Fragaria x ananassa HOM05D005889 ORTHO05D007495 3.2e-32 142.5 183 53.0
Hund20036 Selenicereus undatus HOM05D005889 ORTHO05D007495 4.1e-32 142.1 138 58.0
Thhalv10014795m.g Eutrema salsugineum HOM05D005889 ORTHO05D007495 5.4e-32 141.7 181 53.0
HanXRQChr14g0448791 Helianthus annuus HOM05D005889 ORTHO05D007495 5.4e-32 141.7 191 51.3
Phvul.004G019800 Phaseolus vulgaris HOM05D005889 ORTHO05D007495 9.2e-32 141.0 184 51.6
THA.LOC104822380 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 9.2e-32 141.0 190 53.7
Glyma.13G070100 Glycine max HOM05D005889 ORTHO05D007495 1.2e-31 140.6 127 63.8
A03p06840 Brassica napus HOM05D005889 ORTHO05D007495 1.6e-31 140.2 184 53.8
unitig_21.g20501 Utricularia gibba HOM05D005889 ORTHO05D007495 1.6e-31 140.2 132 62.1
BcaB01g05094 Brassica carinata HOM05D005889 ORTHO05D007495 2.1e-31 139.8 191 51.8
CDE01G0491 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 2.1e-31 139.8 97 75.3
BcaNung05888 Brassica carinata HOM05D005889 ORTHO05D007495 2.7e-31 139.4 184 54.3
C02p07380 Brassica napus HOM05D005889 ORTHO05D007495 2.7e-31 139.4 184 54.3
BolC2t06669H Brassica oleracea HOM05D005889 ORTHO05D007495 2.7e-31 139.4 184 54.3
MBI14_g42400_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 3.5e-31 139.0 211 51.2
Medtr6g007887 Medicago truncatula HOM05D005889 ORTHO05D007495 3.5e-31 139.0 191 50.3
arahy.Tifrunner.gnm1.ann1.LQS8H1 Arachis hypogaea HOM05D005889 ORTHO05D007495 7.8e-31 137.9 91 81.3
arahy.Tifrunner.gnm1.ann1.XH0R3V Arachis hypogaea HOM05D005889 ORTHO05D007495 7.8e-31 137.9 91 81.3
Glyma.19G012900 Glycine max HOM05D005889 ORTHO05D007495 7.8e-31 137.9 151 54.3
VMungo0464G2061 Vigna mungo HOM05D001690 ORTHO05D002627 7.8e-31 137.9 100 75.0
ECA238G1302 Erigeron canadensis HOM05D005889 ORTHO05D007495 1.0e-30 137.5 114 70.2
BraA03t10009Z Brassica rapa HOM05D005889 ORTHO05D007495 1.7e-30 136.7 182 54.4
vmacro05795 Vaccinium macrocarpon HOM05D005889 ORTHO05D007495 1.7e-30 136.7 150 56.7
C03p07840 Brassica napus HOM05D005889 ORTHO05D007495 2.3e-30 136.3 187 51.9
BolC3t13283H Brassica oleracea HOM05D005889 ORTHO05D007495 3.0e-30 136.0 187 51.3
Lj2g0018244 Lotus japonicus HOM05D005889 ORTHO05D007495 3.0e-30 136.0 180 49.4
CDE02G1560 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 3.9e-30 135.6 97 73.2
CSS0046645 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 6.6e-30 134.8 182 49.5
CSS0028338 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 8.6e-30 134.4 181 49.2
ClCG10G014500 Citrullus lanatus HOM05D005889 ORTHO05D007495 8.6e-30 134.4 185 48.6
Lj7C409T13 Lonicera japonica HOM05D005889 ORTHO05D007495 1.1e-29 134.0 124 62.9
Oeu047335.1 Olea europaea HOM05D005889 ORTHO05D007495 1.1e-29 134.0 184 52.2
HanXRQChr12g0385561 Helianthus annuus HOM05D005889 ORTHO05D007495 5.6e-29 131.7 94 73.4
GSVIVG01032527001 Vitis vinifera HOM05D005889 ORTHO05D007495 9.6e-29 131.0 83 83.1
Sp6g29140 Schrenkiella parvula HOM05D005889 ORTHO05D007495 1.6e-28 130.2 91 73.6
Ca_04220_v3 Cicer arietinum L. HOM05D005889 ORTHO05D007495 2.1e-28 129.8 94 72.3
Psat1g080040 Pisum sativum HOM05D005889 ORTHO05D007495 4.0e-27 125.6 192 42.7
Nitab4.5_0005206g0020 Nicotiana tabacum HOM05D005889 ORTHO05D007495 1.5e-26 123.6 88 75.0
Aa31LG11G14590 Aethionema arabicum HOM05D005889 ORTHO05D007495 9.9e-26 120.9 140 50.7
Os05g0337400 Oryza sativa ssp. japonica HOM05D005889 ORTHO05D007495 2.4e-24 116.3 94 67.0
Zm00001eb286710 Zea mays HOM05D005889 ORTHO05D007495 1.2e-23 114.0 92 64.1
EL10Ac2g03378 Beta vulgaris HOM05D005889 ORTHO05D007495 3.5e-23 112.5 77 74.0
ATR0787G083 Amborella trichopoda HOM05D005889 ORTHO05D007495 1.0e-22 110.9 77 72.7
BcaB01g05020 Brassica carinata HOM05D005889 ORTHO05D007495 1.3e-22 110.5 82 70.7
Pp3c10_16560 Physcomitrium patens HOM05D005889 ORTHO05D007495 6.6e-22 108.2 86 62.8
Pp3c2_14600 Physcomitrium patens HOM05D005889 ORTHO05D007495 6.6e-22 108.2 84 61.9
Peaxi162Scf00700g00623 Petunia axillaris HOM05D005889 ORTHO05D007495 1.5e-21 107.1 72 79.2
Pp3c1_25290 Physcomitrium patens HOM05D005889 ORTHO05D007495 1.3e-20 104.0 86 61.6
Lalb_Chr21g0319321 Lupinus albus HOM05D000340 ORTHO05D000821 3.1e-19 99.4 82 65.9
Mapoly0034s0091 Marchantia polymorpha HOM05D005889 ORTHO05D007495 1.2e-18 97.4 86 58.1
Rhsim10G0027100 Rhododendron simsii HOM05D005889 ORTHO05D007495 7.6e-18 94.7 73 71.2
Gohir.A07G218300 Gossypium hirsutum HOM05D005889 ORTHO05D007495 2.2e-17 93.2 97 64.9
Dinv35030 Davidia involucrata HOM05D005889 ORTHO05D007495 3.2e-16 89.4 125 47.2
Cpa.g.sc286.7 Carica papaya HOM05D005889 ORTHO05D007495 5.1e-14 82.0 140 42.9
AL6G25690 Arabidopsis lyrata HOM05D005889 ORTHO05D007495 1.5e-13 80.5 173 37.0
SEGI_28638 Sequoiadendron giganteum HOM05D005889 ORTHO05D007495 4.3e-13 79.0 112 45.5
SMO119G0369 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 1.3e-12 77.4 85 42.4
RcHm_v2.0_Chr2g0170541 Rosa chinensis HOM05D005889 ORTHO05D007495 3.6e-12 75.9 62 69.4
CSS0042844 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 6.2e-12 75.1 58 72.4
HPP92_014818 Vanilla planifolia HOM05D005889 ORTHO05D007495 1.8e-11 73.6 173 35.8
Nn3g16976 Nelumbo nucifera HOM05D005889 ORTHO05D007495 3.4e-10 69.3 124 41.1
Gohir.D12G031850 Gossypium hirsutum HOM05D001962 ORTHO05D019237 1.4e-08 63.9 93 54.8
TPR.G132 Trifolium pratense HOM05D005889 ORTHO05D007495 5.5e-08 62.0 41 75.6
SMO163G0046 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 9.3e-08 61.2 85 36.5
TAR629G0556 Trochodendron aralioides HOM05D001690 ORTHO05D009096 2.1e-07 60.1 39 74.4
Gorai.009G308300 Gossypium raimondii HOM05D001962 ORTHO05D019237 4.6e-07 58.9 93 51.6
AagrBONN_evm.TU.Sc2ySwM_368.656 Anthoceros agrestis HOM05D005889 ORTHO05D007495 6.0e-07 58.5 52 51.9
Gohir.A13G059250 Gossypium hirsutum HOM05D001962 ORTHO05D019237 7.9e-07 58.2 114 44.7
Gohir.A08G189616 Gossypium hirsutum HOM05D001962 ORTHO05D019237 1.8e-06 57.0 114 44.7
Gorai.N013200 Gossypium raimondii HOM05D001962 ORTHO05D019237 3.9e-06 55.8 144 41.7
Gohir.D05G332600 Gossypium hirsutum HOM05D001962 ORTHO05D019237 8.7e-06 54.7 107 48.6


User provided reference genes

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