Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0229500 Salix brachista HOM05D007214 ORTHO05D008907 6.6e-132 474.2 261 100.0
Potri.001G350100 Populus trichocarpa HOM05D007214 ORTHO05D008907 3.1e-81 305.8 212 79.7
Potri.017G074100 Populus trichocarpa HOM05D007214 ORTHO05D008907 5.7e-67 258.5 227 65.6
Manes.17G117200 Manihot esculenta HOM05D007214 ORTHO05D008907 5.0e-47 192.2 251 49.8
CiPaw.04G066400 Carya illinoinensis HOM05D007214 ORTHO05D008907 2.1e-45 186.8 212 51.9
CANSAT64G0721 Cannabis sativa HOM05D007214 ORTHO05D008907 4.7e-45 185.7 210 51.0
Ciclev10012639m.g Citrus clementina HOM05D007214 ORTHO05D008907 9.8e-43 177.9 224 49.6
FAN09G3859 Fragaria x ananassa HOM05D007214 ORTHO05D008907 3.1e-41 172.9 223 46.2
PSO063G2579 Papaver somniferum HOM05D007214 ORTHO05D008907 3.4e-35 152.9 216 46.3
Glyma.04G176300 Glycine max HOM05D007214 ORTHO05D008907 4.4e-35 152.5 225 42.7
FAN02G1556 Fragaria x ananassa HOM05D007214 ORTHO05D008907 9.8e-35 151.4 228 43.9
Nitab4.5_0001239g0030 Nicotiana tabacum HOM05D007214 ORTHO05D008907 1.3e-34 151.0 256 40.2
LjContig00155g0009682 Lotus japonicus HOM05D007214 ORTHO05D008907 1.1e-33 147.9 222 41.4
Duzib187G0634 Durio zibethinus HOM05D007214 ORTHO05D008907 1.8e-33 147.1 220 43.2
Lalb_Chr10g0093331 Lupinus albus HOM05D007214 ORTHO05D008907 4.1e-33 146.0 232 44.4
Glyma.06G189000 Glycine max HOM05D007214 ORTHO05D008907 4.6e-32 142.5 236 41.1
AUR62018331 Chenopodium quinoa HOM05D007214 ORTHO05D008907 7.8e-32 141.7 212 40.6
Peaxi162Scf00129g00734 Petunia axillaris HOM05D007214 ORTHO05D008907 3.0e-31 139.8 223 40.8
AUR62030556 Chenopodium quinoa HOM05D007214 ORTHO05D008907 6.6e-31 138.7 212 41.0
Sc11g0006840 Simmondsia chinensis HOM05D007214 ORTHO05D008907 1.1e-30 137.9 123 59.3
CSS0043780 Camellia sinensis var. sinensis HOM05D007214 ORTHO05D008907 5.6e-30 135.6 221 43.0
Aqoxy3G00863 Aquilegia oxysepala HOM05D007214 ORTHO05D008907 1.6e-29 134.0 227 41.4
Phvul.008G153000 Phaseolus vulgaris HOM05D007214 ORTHO05D008907 2.1e-29 133.7 228 41.2
TPR.G30823 Trifolium pratense HOM05D007214 ORTHO05D008907 1.2e-27 127.9 210 39.5
Sabra17G0065100 Salix brachista HOM05D007214 ORTHO05D008907 4.4e-27 125.9 97 69.1
CARHR292610 Cardamine hirsuta HOM05D007214 ORTHO05D008907 5.8e-27 125.6 222 40.5
Solyc02g087420.3 Solanum lycopersicum HOM05D007214 ORTHO05D008907 1.7e-26 124.0 219 39.7
AT3G28370 Arabidopsis thaliana HOM05D007214 ORTHO05D008907 4.9e-26 122.5 210 40.0
Sopen02g032170 Solanum pennellii HOM05D007214 ORTHO05D008907 6.4e-26 122.1 219 39.7
Ah.12g065280 Amaranthus hybridus HOM05D007214 ORTHO05D008907 2.4e-25 120.2 206 41.3
FAN14G2712 Fragaria x ananassa HOM05D007214 ORTHO05D008907 4.1e-25 119.4 223 37.7
Gorai.001G258300 Gossypium raimondii HOM05D007214 ORTHO05D008907 5.4e-25 119.0 213 40.8
Manes.17G117300 Manihot esculenta HOM05D007214 ORTHO05D008907 7.0e-25 118.6 137 52.6
RcHm_v2.0_Chr2g0169771 Rosa chinensis HOM05D007214 ORTHO05D008907 9.2e-25 118.2 223 37.2
Cpa.g.sc14.68 Carica papaya HOM05D007214 ORTHO05D008907 1.6e-24 117.5 145 46.9
CSS0027558 Camellia sinensis var. sinensis HOM05D007214 ORTHO05D008907 2.0e-24 117.1 221 39.4
Medtr7g034275 Medicago truncatula HOM05D007214 ORTHO05D008907 3.5e-24 116.3 236 37.3
Sabra07G0063000 Salix brachista HOM05D007214 ORTHO05D008907 3.5e-24 116.3 117 59.0
Sp2g17170 Schrenkiella parvula HOM05D007214 ORTHO05D008907 4.6e-24 115.9 210 37.6
arahy.Tifrunner.gnm1.ann1.QRE12D Arachis hypogaea HOM05D007214 ORTHO05D008907 6.0e-24 115.5 236 36.9
arahy.Tifrunner.gnm1.ann1.X6PLX1 Arachis hypogaea HOM05D007214 ORTHO05D008907 1.0e-23 114.8 249 36.1
TWI12G0421 Tripterygium wilfordii HOM05D007214 ORTHO05D008907 1.3e-23 114.4 214 37.4
BcaC06g33744 Brassica carinata HOM05D007214 ORTHO05D008907 2.3e-23 113.6 220 36.8
Ca_08472_v3 Cicer arietinum L. HOM05D007214 ORTHO05D008907 8.6e-23 111.7 192 40.1
HPP92_010494 Vanilla planifolia HOM05D007214 ORTHO05D008907 1.1e-22 111.3 217 37.3
BraA06t26979Z Brassica rapa HOM05D007214 ORTHO05D008907 1.9e-22 110.5 226 36.7
A06p40600 Brassica napus HOM05D007214 ORTHO05D008907 2.5e-22 110.2 223 36.8
C07p37400 Brassica napus HOM05D007214 ORTHO05D008907 5.6e-22 109.0 231 36.8
Nn4g22956 Nelumbo nucifera HOM05D007214 ORTHO05D008907 1.2e-21 107.8 217 35.0
A06p40570 Brassica napus HOM05D007214 ORTHO05D008907 1.6e-21 107.5 211 36.5
Zm00001eb280040 Zea mays HOM05D007214 ORTHO05D008907 1.6e-21 107.5 217 33.6
BolC7t44250H Brassica oleracea HOM05D007214 ORTHO05D008907 6.2e-21 105.5 237 35.9
AL5G17980 Arabidopsis lyrata HOM05D007214 ORTHO05D008907 1.1e-20 104.8 210 37.1
QL02p079285 Quercus lobata HOM05D007214 ORTHO05D008907 3.1e-20 103.2 230 36.5
Gohir.A07G216951 Gossypium hirsutum HOM05D007214 ORTHO05D008907 5.2e-20 102.4 213 38.5
DCAR_011179 Daucus carota HOM05D007214 ORTHO05D008907 2.6e-19 100.1 226 34.1
Carub.0005s0686 Capsella rubella HOM05D007214 ORTHO05D008907 3.4e-19 99.8 210 34.8
MBI15_g38192_MAGBIO Magnolia biondii HOM05D007214 ORTHO05D008907 9.8e-19 98.2 112 50.0
Psat3g038600 Pisum sativum HOM05D007214 ORTHO05D008907 1.3e-18 97.8 129 45.7
TAR629G1667 Trochodendron aralioides HOM05D000068 ORTHO05D000084 1.3e-18 97.8 191 36.1
Gohir.D07G223900 Gossypium hirsutum HOM05D007214 ORTHO05D008907 1.7e-18 97.4 190 39.5
Eucgr.J02159 Eucalyptus grandis HOM05D007214 ORTHO05D008907 2.9e-18 96.7 74 67.6
SGA_v2.0_scaffold135G34803 Striga asiatica HOM05D007214 ORTHO05D008907 6.4e-18 95.5 215 32.1
Prupe.3G275800 Prunus persica HOM05D007214 ORTHO05D008907 2.4e-17 93.6 222 33.3
Dinv33685 Davidia involucrata HOM05D007214 ORTHO05D008907 3.2e-17 93.2 228 36.0
Nitab4.5_0002265g0100 Nicotiana tabacum HOM05D007214 ORTHO05D008907 7.1e-17 92.0 256 31.2
MD09G1042000 Malus domestica HOM05D007214 ORTHO05D008907 9.2e-17 91.7 222 34.2
Cc07_g02800 Coffea canephora HOM05D007214 ORTHO05D008907 1.6e-16 90.9 222 33.3
Rhsim10G0029100 Rhododendron simsii HOM05D007214 ORTHO05D008907 1.3e-15 87.8 216 36.6
RhsimUnG0169100 Rhododendron simsii HOM05D007214 ORTHO05D008907 1.3e-15 87.8 225 35.1
Aa31LG2G4670 Aethionema arabicum HOM05D007214 ORTHO05D008907 3.0e-15 86.7 211 34.1
TAR629G0039 Trochodendron aralioides HOM05D000068 ORTHO05D008907 1.1e-14 84.7 77 50.6
CAN.G206.82 Capsicum annuum HOM05D007214 ORTHO05D008907 1.5e-14 84.3 203 34.0
Thecc.04G070100 Theobroma cacao HOM05D007214 ORTHO05D008907 4.3e-14 82.8 191 35.1
FvH4_6g49740 Fragaria vesca HOM05D007214 ORTHO05D008907 9.5e-14 81.6 215 30.7
MELO3C030968.2 Cucumis melo HOM05D007214 ORTHO05D008907 6.8e-12 75.5 93 40.9
CDE02G1584 Ceratophyllum demersum HOM05D007214 ORTHO05D008907 1.2e-11 74.7 108 38.9
Dinv35004 Davidia involucrata HOM05D007214 ORTHO05D008907 1.5e-11 74.3 168 35.7
Atru.chr8.2432 Acer truncatum HOM05D007214 ORTHO05D008907 4.4e-11 72.8 125 40.0
COL.COLO4_36999 Corchorus olitorius HOM05D007214 ORTHO05D008907 5.8e-11 72.4 205 32.2
SalBow1G8362 Salvia bowleyana HOM05D007214 ORTHO05D008907 7.6e-11 72.0 226 30.1
THA.LOC104805424 Tarenaya hassleriana HOM05D007214 ORTHO05D008907 9.9e-11 71.6 213 31.5
BcaC06g30923 Brassica carinata HOM05D007214 ORTHO05D008907 1.3e-10 71.2 209 30.1
Sabra17G0063300 Salix brachista HOM05D007214 ORTHO05D008907 8.4e-10 68.6 76 55.3
Sed0019253 Sechium edule HOM05D007214 ORTHO05D008907 2.4e-09 67.0 225 27.6
Migut.H00870 Erythranthe guttata HOM05D007214 ORTHO05D008907 5.4e-09 65.9 219 27.9
SGA_v2.0_scaffold205G41734 Striga asiatica HOM05D007214 ORTHO05D008907 5.4e-09 65.9 229 27.1
Oeu060587.1 Olea europaea HOM05D007214 ORTHO05D008907 7.1e-09 65.5 164 31.7
CsaV3_3G041890 Cucumis sativus L. HOM05D062301 ORTHO05D008907 9.2e-09 65.1 214 26.2
Nitab4.5_0001239g0020 Nicotiana tabacum HOM05D005549 ORTHO05D006771 9.2e-09 65.1 207 30.4
GSVIVG01032574001 Vitis vinifera HOM05D007214 ORTHO05D008907 9.2e-09 65.1 102 42.2
Thhalv10004882m.g Eutrema salsugineum HOM05D007214 ORTHO05D008907 1.2e-08 64.7 210 29.5
Nitab4.5_0002265g0110 Nicotiana tabacum HOM05D005549 ORTHO05D006771 2.1e-08 63.9 82 46.3
Hund13295 Selenicereus undatus HOM05D007214 ORTHO05D008907 6.0e-08 62.4 187 32.6
Os06g0235900 Oryza sativa ssp. japonica HOM05D007214 ORTHO05D008907 2.3e-07 60.5 104 36.5
PGSC0003DMG400001300 Solanum tuberosum HOM05D007214 ORTHO05D008907 2.3e-07 60.5 143 30.8
unitig_746.g26578 Utricularia gibba HOM05D007214 ORTHO05D008907 3.9e-07 59.7 49 57.1
Lsat_1_v5_gn_4_180400 Lactuca sativa HOM05D007214 ORTHO05D008907 5.1e-07 59.3 207 26.1
TPR.G39121 Trifolium pratense HOM05D007214 ORTHO05D008907 6.6e-07 58.9 246 28.0
Oeu060589.1 Olea europaea HOM05D007214 ORTHO05D008907 8.6e-07 58.5 38 73.7
ECA232G1410 Erigeron canadensis HOM05D007214 ORTHO05D008907 4.3e-06 56.2 219 26.5


User provided reference genes

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