Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0222000 Salix brachista HOM05D004782 ORTHO05D005498 2.2e-132 475.7 252 100.0
Potri.001G342400 Populus trichocarpa HOM05D004782 ORTHO05D005498 9.3e-107 390.6 251 84.5
Ciclev10018402m.g Citrus clementina HOM05D004782 ORTHO05D005498 7.4e-88 327.8 253 73.1
Atru.chr6.2436 Acer truncatum HOM05D004782 ORTHO05D005498 4.8e-87 325.1 248 71.0
TWI36G0764 Tripterygium wilfordii HOM05D004782 ORTHO05D005498 1.2e-85 320.5 244 73.0
Haze_14764 Corylus avellana HOM05D004782 ORTHO05D005498 1.5e-85 320.1 264 65.5
Manes.15G152300 Manihot esculenta HOM05D004782 ORTHO05D005498 3.5e-82 308.9 250 70.0
Cfa007334 Carpinus fangiana HOM05D004782 ORTHO05D005498 5.1e-81 305.1 247 64.8
Prupe.3G294600 Prunus persica HOM05D004782 ORTHO05D005498 5.1e-81 305.1 259 64.9
MD09G1021700 Malus domestica HOM05D004782 ORTHO05D005498 4.8e-79 298.5 258 64.0
Dinv25722 Davidia involucrata HOM05D004782 ORTHO05D005498 3.1e-78 295.8 258 62.4
Hma1.2p1_0818F.1_g223300 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 9.0e-78 294.3 251 61.8
CANSAT01G0425 Cannabis sativa HOM05D004782 ORTHO05D005498 3.4e-77 292.4 268 62.7
COL.COLO4_29185 Corchorus olitorius HOM05D004782 ORTHO05D005498 3.4e-77 292.4 238 66.8
Lalb_Chr14g0362901 Lupinus albus HOM05D004782 ORTHO05D005498 5.9e-77 291.6 252 64.3
MD17G1021600 Malus domestica HOM05D004782 ORTHO05D005498 7.7e-77 291.2 258 64.3
Cpa.g.sc130.76 Carica papaya HOM05D004782 ORTHO05D005498 2.9e-76 289.3 240 67.9
Duzib147G0999 Durio zibethinus HOM05D004782 ORTHO05D005498 3.8e-76 288.9 239 67.4
VMungo0647G2046 Vigna mungo HOM05D004782 ORTHO05D005498 3.8e-76 288.9 272 60.7
CSS0038869 Camellia sinensis var. sinensis HOM05D004782 ORTHO05D005498 8.5e-76 287.7 250 62.8
Ca_07059_v3 Cicer arietinum L. HOM05D004782 ORTHO05D005498 8.5e-76 287.7 262 61.1
FvH4_6g51920 Fragaria vesca HOM05D004782 ORTHO05D005498 3.2e-75 285.8 263 60.8
Phvul.008G228200 Phaseolus vulgaris HOM05D004782 ORTHO05D005498 7.2e-75 284.6 286 57.7
RcHm_v2.0_Chr2g0173401 Rosa chinensis HOM05D004782 ORTHO05D005498 1.2e-74 283.9 275 60.4
Nn3g16678 Nelumbo nucifera HOM05D004782 ORTHO05D005498 6.1e-74 281.6 248 62.5
Rhsim08G0048200 Rhododendron simsii HOM05D004782 ORTHO05D005498 1.0e-73 280.8 255 61.6
Thecc.04G020400 Theobroma cacao HOM05D004782 ORTHO05D005498 1.4e-73 280.4 246 63.8
FAN14G2962 Fragaria x ananassa HOM05D004782 ORTHO05D005498 2.3e-73 279.6 266 58.3
QL02p073881 Quercus lobata HOM05D004782 ORTHO05D005498 3.0e-73 279.3 277 58.5
Glyma.16G068500 Glycine max HOM05D004782 ORTHO05D005498 5.1e-73 278.5 273 60.8
Eucgr.I01726 Eucalyptus grandis HOM05D004782 ORTHO05D005498 6.7e-73 278.1 251 64.9
FAN05G5758 Fragaria x ananassa HOM05D004782 ORTHO05D005498 8.8e-73 277.7 283 56.9
Aqoxy3G01250 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 4.3e-72 275.4 255 62.7
EL10Ac6g14096 Beta vulgaris HOM05D004782 ORTHO05D005498 9.7e-72 274.2 238 63.4
Lj1g0001798 Lotus japonicus HOM05D004782 ORTHO05D005498 2.2e-71 273.1 248 62.9
TPR.G1089 Trifolium pratense HOM05D004782 ORTHO05D005498 2.2e-71 273.1 265 58.5
Dinv33420 Davidia involucrata HOM05D004782 ORTHO05D005498 6.3e-71 271.6 229 64.6
Hund13000 Selenicereus undatus HOM05D004782 ORTHO05D005498 6.3e-71 271.6 242 63.6
Gorai.011G094100 Gossypium raimondii HOM05D004782 ORTHO05D005498 1.4e-70 270.4 238 63.9
TAR374G0154 Trochodendron aralioides HOM05D004782 ORTHO05D005498 1.8e-70 270.0 256 57.8
Cc07_g00060 Coffea canephora HOM05D004782 ORTHO05D005498 2.4e-70 269.6 249 59.0
Ah.02g128240 Amaranthus hybridus HOM05D004782 ORTHO05D005498 4.1e-70 268.9 250 63.6
Gohir.D10G085900 Gossypium hirsutum HOM05D004782 ORTHO05D005498 1.2e-69 267.3 238 63.4
SGA_v2.0_scaffold135G34920 Striga asiatica HOM05D004782 ORTHO05D005498 3.4e-69 265.8 247 60.3
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 4.5e-69 265.4 256 56.2
Migut.H00022 Erythranthe guttata HOM05D004782 ORTHO05D005498 5.9e-69 265.0 254 58.7
Psat5g038480 Pisum sativum HOM05D004782 ORTHO05D005498 7.7e-69 264.6 261 58.2
MSTRG.3133 Avicennia marina HOM05D004782 ORTHO05D005498 1.0e-68 264.2 255 58.8
CAN.G473.32 Capsicum annuum HOM05D004782 ORTHO05D005498 1.3e-68 263.8 250 59.6
Glyma.16G018100 Glycine max HOM05D004782 ORTHO05D005498 1.7e-68 263.5 283 57.2
Sc03g0007250 Simmondsia chinensis HOM05D004782 ORTHO05D005498 3.8e-68 262.3 243 63.8
AUR62028428 Chenopodium quinoa HOM05D004782 ORTHO05D005498 3.2e-67 259.2 244 59.0
PSO017G6962 Papaver somniferum HOM05D004782 ORTHO05D005498 1.2e-66 257.3 264 58.7
Actinidia18440 Actinidia chinensis HOM05D004782 ORTHO05D005498 1.6e-66 256.9 225 63.6
FAN02G4014 Fragaria x ananassa HOM05D004782 ORTHO05D005498 1.6e-66 256.9 274 58.0
vmacro18299 Vaccinium macrocarpon HOM05D004782 ORTHO05D005498 1.6e-66 256.9 285 54.0
CiPaw.03G046200 Carya illinoinensis HOM05D004782 ORTHO05D005498 3.6e-66 255.8 223 61.4
Gohir.A10G101700 Gossypium hirsutum HOM05D004782 ORTHO05D005498 4.7e-66 255.4 238 61.8
Medtr7g033120 Medicago truncatula HOM05D004782 ORTHO05D005498 1.1e-64 250.8 260 58.5
Peaxi162Scf00420g00132 Petunia axillaris HOM05D004782 ORTHO05D005498 1.1e-64 250.8 251 59.0
ClCG10G013750 Citrullus lanatus HOM05D004782 ORTHO05D005498 2.0e-64 250.0 247 57.9
PSO478G2740 Papaver somniferum HOM05D004782 ORTHO05D005498 2.6e-64 249.6 262 57.6
PSO339G5508 Papaver somniferum HOM05D004782 ORTHO05D005498 7.4e-64 248.1 252 60.7
Sopen02g038150 Solanum pennellii HOM05D004782 ORTHO05D005498 9.7e-64 247.7 244 56.6
unitig_62.g23373 Utricularia gibba HOM05D004782 ORTHO05D005498 1.3e-63 247.3 237 59.5
Solyc02g093510.3 Solanum lycopersicum HOM05D004782 ORTHO05D005498 2.8e-63 246.1 242 56.6
HanXRQChr14g0451131 Helianthus annuus HOM05D004782 ORTHO05D005498 5.3e-62 241.9 265 54.0
MELO3C026593.2 Cucumis melo HOM05D004782 ORTHO05D005498 1.2e-61 240.7 260 57.3
PGR142G1749 Punica granatum HOM05D004782 ORTHO05D005498 4.5e-61 238.8 256 55.1
CsaV3_3G042920 Cucumis sativus L. HOM05D004782 ORTHO05D005498 1.3e-60 237.3 256 56.2
MBI06_g10164_MAGBIO Magnolia biondii HOM05D004782 ORTHO05D005498 2.9e-60 236.1 261 54.0
CiPaw.04G029900 Carya illinoinensis HOM05D004782 ORTHO05D005498 5.0e-60 235.3 217 58.1
BcaB01g06372 Brassica carinata HOM05D004782 ORTHO05D005498 6.5e-60 235.0 227 56.4
SalBow1G0524 Salvia bowleyana HOM05D004782 ORTHO05D005498 3.2e-59 232.6 252 54.4
Aa31LG11G15220 Aethionema arabicum HOM05D004782 ORTHO05D005498 4.2e-59 232.3 236 55.5
BcaNung03155 Brassica carinata HOM05D004782 ORTHO05D005498 7.2e-59 231.5 237 52.7
THA.LOC104802393 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 7.2e-59 231.5 243 55.6
Sed0010446 Sechium edule HOM05D004782 ORTHO05D005498 2.1e-58 229.9 298 49.0
DCAR_011265 Daucus carota HOM05D004782 ORTHO05D005498 2.7e-58 229.6 260 52.3
Sp6g29580 Schrenkiella parvula HOM05D004782 ORTHO05D005498 2.7e-58 229.6 235 55.7
C03p07650 Brassica napus HOM05D004782 ORTHO05D005498 6.1e-58 228.4 232 55.6
AL6G25170 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 1.8e-57 226.9 237 53.6
ECA238G0280 Erigeron canadensis HOM05D004782 ORTHO05D005498 1.8e-57 226.9 274 48.9
A03p06620 Brassica napus HOM05D004782 ORTHO05D005498 3.0e-57 226.1 222 56.8
BraA03t09994Z Brassica rapa HOM05D004782 ORTHO05D005498 3.0e-57 226.1 222 56.8
C02p06750 Brassica napus HOM05D004782 ORTHO05D005498 6.7e-57 224.9 239 54.8
BolC3t13265H Brassica oleracea HOM05D004782 ORTHO05D005498 6.7e-57 224.9 231 55.4
CARHR198870 Cardamine hirsuta HOM05D004782 ORTHO05D005498 8.8e-57 224.6 264 50.0
BraA02t05220Z Brassica rapa HOM05D004782 ORTHO05D005498 4.4e-56 222.2 228 54.8
Thhalv10014310m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 7.4e-56 221.5 217 55.3
GSVIVG01032375001 Vitis vinifera HOM05D004782 ORTHO05D005498 2.2e-55 219.9 212 61.3
Lsat_1_v5_gn_2_91141 Lactuca sativa HOM05D004782 ORTHO05D005498 2.8e-55 219.5 263 51.0
ATR0122G021 Amborella trichopoda HOM05D004782 ORTHO05D005498 4.8e-55 218.8 242 54.5
Nitab4.5_0001562g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 4.8e-55 218.8 221 56.6
BcaC03g13490 Brassica carinata HOM05D004782 ORTHO05D005498 8.2e-55 218.0 275 49.5
BolC2t06621H Brassica oleracea HOM05D004782 ORTHO05D005498 8.2e-55 218.0 237 54.0
CDE09G1218 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 1.4e-54 217.2 244 49.6
A02p02500 Brassica napus HOM05D004782 ORTHO05D005498 2.4e-54 216.5 233 54.5
AT5G14440 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 5.3e-54 215.3 227 52.9
PGSC0003DMG400012612 Solanum tuberosum HOM05D004782 ORTHO05D005498 9.1e-54 214.5 222 54.1
CDE02G1226 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 2.2e-52 209.9 246 49.6
AT5G40570 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 5.0e-52 208.8 242 52.5
SEGI_27694 Sequoiadendron giganteum HOM05D004782 ORTHO05D005498 5.0e-52 208.8 250 48.0
Carub.0006s1262 Capsella rubella HOM05D004782 ORTHO05D005498 6.5e-52 208.4 229 52.8
PGR083G1527 Punica granatum HOM05D004782 ORTHO05D005498 1.9e-51 206.8 243 51.4
THA.LOC104805360 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 4.2e-51 205.7 240 50.0
CARHR261410 Cardamine hirsuta HOM05D004782 ORTHO05D005498 1.4e-49 200.7 244 50.4
AL7G49230 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 6.8e-49 198.4 248 51.6
DCAR_021737 Daucus carota HOM05D004782 ORTHO05D005498 6.8e-49 198.4 250 50.0
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 1.2e-48 197.6 246 48.8
Carub.0007s3495 Capsella rubella HOM05D004782 ORTHO05D005498 2.6e-48 196.4 238 50.8
Nitab4.5_0006683g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 4.4e-48 195.7 238 52.1
Hma1.2p1_1747F.1_g300620 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 7.5e-48 194.9 238 49.6
Sp7g01290 Schrenkiella parvula HOM05D004782 ORTHO05D005498 7.5e-48 194.9 239 49.8
BcaC03g13488 Brassica carinata HOM05D004782 ORTHO05D005498 2.8e-47 193.0 140 66.4
Lju41A44T82 Lonicera japonica HOM05D004782 ORTHO05D005498 3.7e-47 192.6 203 51.7
BcaB02g07942 Brassica carinata HOM05D004782 ORTHO05D005498 2.0e-45 186.8 241 47.7
FAN09G1186 Fragaria x ananassa HOM05D004782 ORTHO05D005498 2.0e-45 186.8 107 77.6
Thhalv10027935m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 5.9e-45 185.3 247 47.4
BcaC08g44464 Brassica carinata HOM05D004782 ORTHO05D005498 2.2e-44 183.3 237 46.4
Os04g0480400 Oryza sativa ssp. japonica HOM05D004782 ORTHO05D005498 2.9e-44 183.0 255 46.3
BcaC03g13487 Brassica carinata HOM05D000631 ORTHO05D005498 5.0e-44 182.2 109 76.1
BcaNung03158 Brassica carinata HOM05D004782 ORTHO05D005498 1.1e-43 181.0 259 44.8
Zm00001eb424970 Zea mays HOM05D004782 ORTHO05D005498 1.1e-43 181.0 250 44.8
arahy.Tifrunner.gnm1.ann1.6S1J49 Arachis hypogaea HOM05D004782 ORTHO05D005498 7.2e-43 178.3 254 48.4
BolC6t37113H Brassica oleracea HOM05D000001 ORTHO05D000003 1.6e-42 177.2 257 45.5
arahy.Tifrunner.gnm1.ann1.65GF4N Arachis hypogaea HOM05D004782 ORTHO05D005498 2.7e-42 176.4 255 48.2
Hma1.2p1_1563F.1_g290780 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 4.8e-39 165.6 103 73.8
Sabra15G0083700 Salix brachista HOM05D004782 ORTHO05D005498 8.6e-36 154.8 79 96.2
Actinidia33328 Actinidia chinensis HOM05D004782 ORTHO05D005498 3.3e-35 152.9 104 67.3
C09p40620 Brassica napus HOM05D004782 ORTHO05D005498 4.2e-35 152.5 251 41.8
BcaC01g01812 Brassica carinata HOM05D004782 ORTHO05D005498 2.8e-34 149.8 222 42.3
C08p04380 Brassica napus HOM05D004782 ORTHO05D005498 6.8e-33 145.2 101 64.4
BolC7t41458H Brassica oleracea HOM05D004782 ORTHO05D005498 1.5e-32 144.1 101 63.4
BcaC01g01740 Brassica carinata HOM05D004782 ORTHO05D005498 4.4e-32 142.5 114 58.8
BolC3t19536H Brassica oleracea HOM05D004782 ORTHO05D005498 4.4e-32 142.5 114 58.8
BolC9t56944H Brassica oleracea HOM05D004782 ORTHO05D005498 1.7e-31 140.6 271 38.7
HPP92_008082 Vanilla planifolia HOM05D004782 ORTHO05D005498 2.2e-31 140.2 238 39.9
BcaC04g20684 Brassica carinata HOM05D004782 ORTHO05D005498 4.1e-30 136.0 221 41.6
AagrBONN_evm.TU.Sc2ySwM_368.1010 Anthoceros agrestis HOM05D004782 ORTHO05D005498 5.9e-29 132.1 261 32.6
BcaC07g37075 Brassica carinata HOM05D004782 ORTHO05D005498 2.3e-28 130.2 95 63.2
C05p55830 Brassica napus HOM05D004782 ORTHO05D005498 1.6e-26 124.0 86 62.8
BcaC05g29299 Brassica carinata HOM05D004782 ORTHO05D014986 2.1e-26 123.6 121 50.4
BolC8t47241H Brassica oleracea HOM05D004782 ORTHO05D005498 2.1e-26 123.6 84 64.3
Mapoly0013s0192 Marchantia polymorpha HOM05D004782 ORTHO05D005498 2.1e-26 123.6 274 33.2
C03p72400 Brassica napus HOM05D000186 ORTHO05D005498 1.4e-25 120.9 85 61.2
C07p10120 Brassica napus HOM05D000186 ORTHO05D005498 3.1e-25 119.8 92 57.6
Gohir.A04G046350 Gossypium hirsutum HOM05D004782 ORTHO05D005498 6.4e-23 112.1 79 67.1
BolC5t34251H Brassica oleracea HOM05D004782 ORTHO05D005498 1.1e-22 111.3 86 58.1
SMO119G0179 Selaginella moellendorffii HOM05D004782 ORTHO05D005498 2.4e-22 110.2 232 32.8
Lj7A601G104 Lonicera japonica HOM05D004782 ORTHO05D005498 5.0e-20 102.4 180 40.6
CDE06G1742 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 3.2e-14 83.2 115 43.5
MD10G1172000 Malus domestica HOM05D004782 ORTHO05D005498 3.3e-11 73.2 73 61.6
Actinidia35780 Actinidia chinensis HOM05D004782 ORTHO05D005498 2.8e-10 70.1 42 73.8
Aqoxy3G01251 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 1.1e-09 68.2 74 50.0
CBR_g2746 Chara braunii HOM05D001539 ORTHO05D000937 3.1e-09 66.6 338 25.1
Cc07_g20220 Coffea canephora HOM05D001715 ORTHO05D004824 4.9e-07 59.3 52 59.6


User provided reference genes

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