Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0215100 Salix brachista HOM05D006762 ORTHO05D003505 5.4e-48 194.1 107 100.0
Potri.001G333800 Populus trichocarpa HOM05D006762 ORTHO05D003505 1.4e-40 169.5 98 95.9
Potri.017G068600 Populus trichocarpa HOM05D006762 ORTHO05D003505 6.0e-31 137.5 107 77.6
BcaC06g31382 Brassica carinata HOM05D006762 ORTHO05D003505 3.4e-26 121.7 110 68.2
Sp2g12170 Schrenkiella parvula HOM05D006762 ORTHO05D003505 9.9e-26 120.2 110 68.2
QL12p012005 Quercus lobata HOM05D006762 ORTHO05D003505 1.7e-25 119.4 104 72.1
BcaC06g31384 Brassica carinata HOM05D006762 ORTHO05D003505 3.8e-25 118.2 110 67.3
A02p31340 Brassica napus HOM05D006762 ORTHO05D003505 3.8e-25 118.2 106 67.9
BraA02t08136Z Brassica rapa HOM05D006762 ORTHO05D003505 3.8e-25 118.2 106 67.9
Ciclev10023003m.g Citrus clementina HOM05D006762 ORTHO05D003505 6.4e-25 117.5 105 66.7
Manes.01G081200 Manihot esculenta HOM05D006762 ORTHO05D003505 1.4e-24 116.3 107 69.2
C02p48680 Brassica napus HOM05D006762 ORTHO05D003505 2.4e-24 115.5 110 65.5
BolC2t10960H Brassica oleracea HOM05D006762 ORTHO05D003505 2.4e-24 115.5 110 65.5
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 5.4e-24 114.4 112 64.3
BcaC06g34251 Brassica carinata HOM05D006762 ORTHO05D003505 7.1e-24 114.0 109 66.1
C07p31100 Brassica napus HOM05D006762 ORTHO05D003505 7.1e-24 114.0 109 66.1
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 2.3e-22 109.0 107 64.5
COL.COLO4_37166 Corchorus olitorius HOM05D006762 ORTHO05D003505 1.1e-21 106.7 109 61.5
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 1.5e-21 106.3 110 62.7
FAN13G0097 Fragaria x ananassa HOM05D000502 ORTHO05D000356 2.5e-21 105.5 105 64.8
Thhalv10001082m.g Eutrema salsugineum HOM05D006762 ORTHO05D003505 3.3e-21 105.1 102 67.6
A06p45070 Brassica napus HOM05D006762 ORTHO05D003505 9.6e-21 103.6 110 62.7
CiPaw.11G079800 Carya illinoinensis HOM05D006762 ORTHO05D003505 9.6e-21 103.6 115 58.3
GSVIVG01004713001 Vitis vinifera HOM05D006762 ORTHO05D003505 9.6e-21 103.6 110 61.8
Migut.A01106 Erythranthe guttata HOM05D006762 ORTHO05D003505 2.8e-20 102.1 112 58.0
FAN08G1018 Fragaria x ananassa HOM05D006762 ORTHO05D003505 2.8e-20 102.1 105 64.8
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 3.7e-20 101.7 105 60.0
HanXRQChr03g0087771 Helianthus annuus HOM05D006762 ORTHO05D003505 3.7e-20 101.7 95 61.1
FAN04G0434 Fragaria x ananassa HOM05D006762 ORTHO05D003505 6.2e-20 100.9 105 64.8
Actinidia27471 Actinidia chinensis HOM05D006762 ORTHO05D003505 8.1e-20 100.5 112 61.6
BcaC03g16962 Brassica carinata HOM05D006762 ORTHO05D003505 8.1e-20 100.5 101 63.4
Gohir.A08G169800 Gossypium hirsutum HOM05D006762 ORTHO05D003505 1.1e-19 100.1 110 65.5
Gohir.D08G188100 Gossypium hirsutum HOM05D006762 ORTHO05D003505 1.1e-19 100.1 110 65.5
Gorai.004G198000 Gossypium raimondii HOM05D006762 ORTHO05D003505 1.1e-19 100.1 110 65.5
FAN18G2762 Fragaria x ananassa HOM05D006762 ORTHO05D003505 1.4e-19 99.8 105 63.8
TAR629G0824 Trochodendron aralioides HOM05D006762 ORTHO05D003505 1.4e-19 99.8 109 57.8
Lalb_Chr09g0330061 Lupinus albus HOM05D006762 ORTHO05D003505 4.0e-19 98.2 104 59.6
AL8G10530 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 5.3e-19 97.8 98 67.3
CARHR173910 Cardamine hirsuta HOM05D006762 ORTHO05D003505 5.3e-19 97.8 101 66.3
ClCG10G002600 Citrullus lanatus HOM05D006762 ORTHO05D003505 6.9e-19 97.4 106 57.5
RcHm_v2.0_Chr7g0203511 Rosa chinensis HOM05D006762 ORTHO05D003505 6.9e-19 97.4 98 65.3
PGSC0003DMG400004817 Solanum tuberosum HOM05D006762 ORTHO05D003505 6.9e-19 97.4 107 57.9
CAN.G1058.38 Capsicum annuum HOM05D006762 ORTHO05D003505 1.5e-18 96.3 107 56.1
SalBow6G0204 Salvia bowleyana HOM05D006762 ORTHO05D003505 1.5e-18 96.3 110 57.3
BraA06t27376Z Brassica rapa HOM05D006762 ORTHO05D003505 2.0e-18 95.9 99 61.6
MELO3C013933.2 Cucumis melo HOM05D006762 ORTHO05D003505 2.6e-18 95.5 106 56.6
BolC7t43652H Brassica oleracea HOM05D006762 ORTHO05D003505 3.4e-18 95.1 98 63.3
Oeu020431.1 Olea europaea HOM05D006762 ORTHO05D003505 3.4e-18 95.1 105 51.4
Thecc.03G250100 Theobroma cacao HOM05D006762 ORTHO05D003505 3.4e-18 95.1 98 63.3
Sed0021009 Sechium edule HOM05D006762 ORTHO05D003505 4.5e-18 94.7 106 56.6
Solyc08g078560.3 Solanum lycopersicum HOM05D006762 ORTHO05D003505 7.6e-18 94.0 107 57.0
TWI81G0572 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 7.6e-18 94.0 97 62.9
vmacro21548 Vaccinium macrocarpon HOM05D006762 ORTHO05D003505 9.9e-18 93.6 112 58.9
Duzib084G1100 Durio zibethinus HOM05D006762 ORTHO05D003505 1.3e-17 93.2 102 63.7
MD04G1063100 Malus domestica HOM05D006762 ORTHO05D003505 1.7e-17 92.8 99 61.6
SalBow6G1716 Salvia bowleyana HOM05D006762 ORTHO05D003505 1.7e-17 92.8 111 59.5
Aqoxy7G00783 Aquilegia oxysepala HOM05D006762 ORTHO05D003505 2.9e-17 92.0 111 54.1
AT5G47455 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 3.8e-17 91.7 96 65.6
CiPaw.12G051800 Carya illinoinensis HOM05D006762 ORTHO05D003505 4.9e-17 91.3 101 59.4
Duzib205G1027 Durio zibethinus HOM05D006762 ORTHO05D003505 1.4e-16 89.7 100 58.0
FvH4_5g19060 Fragaria vesca HOM05D006762 ORTHO05D003505 1.4e-16 89.7 94 61.7
Medtr4g100820 Medicago truncatula HOM05D006762 ORTHO05D003505 1.4e-16 89.7 105 55.2
Carub.0008s0032 Capsella rubella HOM05D006762 ORTHO05D003505 5.5e-16 87.8 94 66.0
Lj4g0004620 Lotus japonicus HOM05D006762 ORTHO05D003505 5.5e-16 87.8 106 60.4
Psat4g072480 Pisum sativum HOM05D006762 ORTHO05D003505 7.1e-16 87.4 109 56.0
CANSAT21G1567 Cannabis sativa HOM05D006762 ORTHO05D003505 9.3e-16 87.0 97 54.6
Lsat_1_v5_gn_6_90840 Lactuca sativa HOM05D006762 ORTHO05D003505 9.3e-16 87.0 100 55.0
Manes.02G040300 Manihot esculenta HOM05D006762 ORTHO05D003505 9.3e-16 87.0 99 59.6
Carub.0007s2409 Capsella rubella HOM05D006762 ORTHO05D003505 1.2e-15 86.7 96 58.3
Hund14549 Selenicereus undatus HOM05D006762 ORTHO05D003505 1.2e-15 86.7 96 55.2
Prupe.5G068300 Prunus persica HOM05D006762 ORTHO05D003505 2.7e-15 85.5 95 61.1
Nitab4.5_0000882g0040 Nicotiana tabacum HOM05D006762 ORTHO05D003505 1.0e-14 83.6 109 53.2
arahy.Tifrunner.gnm1.ann1.YI4YN9 Arachis hypogaea HOM05D006762 ORTHO05D003505 1.8e-14 82.8 52 82.7
ECA240G1429 Erigeron canadensis HOM05D006762 ORTHO05D003505 3.9e-14 81.6 97 54.6
CsaV3_3G002630 Cucumis sativus L. HOM05D006762 ORTHO05D003505 5.1e-14 81.3 97 53.6
PGR031G2035 Punica granatum HOM05D006762 ORTHO05D003505 1.1e-13 80.1 95 60.0
TWI60G1284 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 1.1e-13 80.1 97 56.7
AT4G17310 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 1.5e-13 79.7 103 52.4
Lj8A263T41 Lonicera japonica HOM05D006762 ORTHO05D003505 1.5e-13 79.7 104 56.7
Sopen08g027040 Solanum pennellii HOM05D006762 ORTHO05D003505 1.9e-13 79.3 96 55.2
Lalb_Chr16g0386731 Lupinus albus HOM05D006762 ORTHO05D003505 1.3e-12 76.6 96 54.2
THA.LOC104812806 Tarenaya hassleriana HOM05D006762 ORTHO05D003505 1.3e-12 76.6 94 53.2
MSTRG.12104 Avicennia marina HOM05D006762 ORTHO05D003505 2.1e-12 75.9 97 56.7
Rhsim07G0109700 Rhododendron simsii HOM05D006762 ORTHO05D003505 2.8e-12 75.5 97 53.6
Dinv39153 Davidia involucrata HOM05D000502 ORTHO05D000356 4.8e-12 74.7 90 56.7
Nn6g33933 Nelumbo nucifera HOM05D006762 ORTHO05D003505 4.8e-12 74.7 102 48.0
TPR.G37627 Trifolium pratense HOM05D006762 ORTHO05D003505 8.2e-12 73.9 98 53.1
Nitab4.5_0001501g0020 Nicotiana tabacum HOM05D006762 ORTHO05D003505 1.4e-11 73.2 105 50.5
Phvul.003G221200 Phaseolus vulgaris HOM05D006762 ORTHO05D003505 3.1e-11 72.0 96 53.1
Glyma.05G060100 Glycine max HOM05D006762 ORTHO05D003505 4.0e-11 71.6 94 52.1
unitig_21.g20319 Utricularia gibba HOM05D006762 ORTHO05D003505 4.0e-11 71.6 107 47.7
Ca_21971_v3 Cicer arietinum L. HOM05D006762 ORTHO05D003505 5.3e-11 71.2 97 56.7
CDE12G0636 Ceratophyllum demersum HOM05D006762 ORTHO05D003505 6.9e-11 70.9 101 47.5
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 2.0e-10 69.3 99 47.5
QL04p035820 Quercus lobata HOM05D006762 ORTHO05D003505 2.0e-10 69.3 105 47.6
SEGI_29263 Sequoiadendron giganteum HOM05D006762 ORTHO05D003505 5.8e-10 67.8 96 51.0
Thecc.09G045900 Theobroma cacao HOM05D007429 ORTHO05D003505 5.8e-10 67.8 99 47.5
AUR62019952 Chenopodium quinoa HOM05D006762 ORTHO05D003505 1.3e-09 66.6 105 47.6
Cc08_g12340 Coffea canephora HOM05D006762 ORTHO05D003505 1.3e-09 66.6 101 47.5
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 1.3e-09 66.6 99 45.5
Potri.006G237800 Populus trichocarpa HOM05D007429 ORTHO05D003505 1.3e-09 66.6 102 45.1
Sabra06G0186000 Salix brachista HOM05D007429 ORTHO05D003505 1.3e-09 66.6 102 45.1
Os02g0658300 Oryza sativa ssp. japonica HOM05D006762 ORTHO05D003505 1.7e-09 66.2 54 74.1
CSS0021998 Camellia sinensis var. sinensis HOM05D006762 ORTHO05D003505 3.8e-09 65.1 94 48.9
Glyma.17G142500 Glycine max HOM05D006762 ORTHO05D003505 4.9e-09 64.7 94 46.8
Aqoxy7G01463 Aquilegia oxysepala HOM05D007429 ORTHO05D003505 6.5e-09 64.3 99 47.5
AUR62007089 Chenopodium quinoa HOM05D006762 ORTHO05D003505 6.5e-09 64.3 105 46.7
Ca_15587_v3 Cicer arietinum L. HOM05D002792 ORTHO05D003039 8.4e-09 63.9 61 57.4
ATR0317G117 Amborella trichopoda HOM05D006762 ORTHO05D003505 1.1e-08 63.5 96 46.9
Glyma.03G118000 Glycine max HOM05D006762 ORTHO05D022366 1.9e-08 62.8 107 50.5
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 2.5e-08 62.4 102 44.1
Lsat_1_v5_gn_6_22640 Lactuca sativa HOM05D007429 ORTHO05D003505 3.2e-08 62.0 83 45.8
Manes.16G075000 Manihot esculenta HOM05D007429 ORTHO05D003505 3.2e-08 62.0 99 42.4
SalBow4G0096 Salvia bowleyana HOM05D006762 ORTHO05D003505 4.2e-08 61.6 92 53.3
SalBow4G2872 Salvia bowleyana HOM05D006762 ORTHO05D003505 4.2e-08 61.6 92 53.3
arahy.Tifrunner.gnm1.ann1.8JK4ZI Arachis hypogaea HOM05D006762 ORTHO05D003505 5.5e-08 61.2 41 78.0
arahy.Tifrunner.gnm1.ann1.R0MHDP Arachis hypogaea HOM05D007429 ORTHO05D003505 5.5e-08 61.2 44 68.2
arahy.Tifrunner.gnm1.ann1.ZH3G1A Arachis hypogaea HOM05D007429 ORTHO05D003505 5.5e-08 61.2 44 68.2
EL10Ac2g04004 Beta vulgaris HOM05D007429 ORTHO05D003505 5.5e-08 61.2 81 48.1
Gohir.D08G270600 Gossypium hirsutum HOM05D007429 ORTHO05D003505 5.5e-08 61.2 99 45.5
MD15G1092600 Malus domestica HOM05D007429 ORTHO05D003505 5.5e-08 61.2 105 44.8
Phvul.009G110300 Phaseolus vulgaris HOM05D007429 ORTHO05D003505 5.5e-08 61.2 78 47.4
THA.LOC104811265 Tarenaya hassleriana HOM05D007429 ORTHO05D003505 7.1e-08 60.8 105 44.8
Glyma.06G086300 Glycine max HOM05D007429 ORTHO05D003505 1.2e-07 60.1 78 47.4
Gohir.D05G048100 Gossypium hirsutum HOM05D007429 ORTHO05D003505 1.2e-07 60.1 89 47.2
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 1.2e-07 60.1 84 47.6
Atru.chr7.2081 Acer truncatum HOM05D007429 ORTHO05D003505 1.6e-07 59.7 99 44.4
Nn6g35292 Nelumbo nucifera HOM05D007429 ORTHO05D003505 1.6e-07 59.7 94 44.7
Dinv44108 Davidia involucrata HOM05D006762 ORTHO05D003505 2.1e-07 59.3 38 78.9
Lalb_Chr08g0243031 Lupinus albus HOM05D007429 ORTHO05D003505 2.1e-07 59.3 51 56.9
Medtr3g109720 Medicago truncatula HOM05D007429 ORTHO05D003505 2.1e-07 59.3 106 43.4
Solyc08g066520.3 Solanum lycopersicum HOM05D007429 ORTHO05D003505 2.1e-07 59.3 104 42.3
BcaC04g19209 Brassica carinata HOM05D007429 ORTHO05D003505 2.7e-07 58.9 105 42.9
C09p65190 Brassica napus HOM05D007429 ORTHO05D003505 2.7e-07 58.9 105 42.9
BolC9t59348H Brassica oleracea HOM05D007429 ORTHO05D003505 2.7e-07 58.9 105 42.9
Sopen08g020350 Solanum pennellii HOM05D007429 ORTHO05D003505 2.7e-07 58.9 106 41.5
VMungo1309G0862 Vigna mungo HOM05D007429 ORTHO05D003505 3.5e-07 58.5 47 61.7
MD08G1113300 Malus domestica HOM05D007429 ORTHO05D003505 4.6e-07 58.2 105 43.8
MBI01_g42895_MAGBIO Magnolia biondii HOM05D007429 ORTHO05D003505 6.0e-07 57.8 50 58.0
FAN27G3027 Fragaria x ananassa HOM05D007429 ORTHO05D003505 7.9e-07 57.4 105 43.8
Gohir.A05G046400 Gossypium hirsutum HOM05D007429 ORTHO05D003505 7.9e-07 57.4 88 46.6
Oeu030718.1 Olea europaea HOM05D007429 ORTHO05D003505 1.0e-06 57.0 99 38.4
RcHm_v2.0_Chr6g0306421 Rosa chinensis HOM05D007429 ORTHO05D003505 1.0e-06 57.0 105 42.9
TPR.G15111 Trifolium pratense HOM05D007429 ORTHO05D003505 1.0e-06 57.0 99 42.4
A10p26140 Brassica napus HOM05D007429 ORTHO05D003505 1.3e-06 56.6 105 41.9
BraA10t44673Z Brassica rapa HOM05D007429 ORTHO05D003505 1.3e-06 56.6 105 41.9
Prupe.1G447500 Prunus persica HOM05D007429 ORTHO05D003505 1.3e-06 56.6 94 42.6
Actinidia14679 Actinidia chinensis HOM05D007429 ORTHO05D003505 1.8e-06 56.2 99 42.4
Dinv23374 Davidia involucrata HOM05D007429 ORTHO05D003505 1.8e-06 56.2 99 42.4
Hund19504 Selenicereus undatus HOM05D007429 ORTHO05D003505 1.8e-06 56.2 106 40.6
PGSC0003DMG402029142 Solanum tuberosum HOM05D007429 ORTHO05D003505 1.8e-06 56.2 105 40.0
DCAR_000754 Daucus carota HOM05D002792 ORTHO05D003039 2.3e-06 55.8 51 54.9
ECA233G1441 Erigeron canadensis HOM05D007429 ORTHO05D003505 2.3e-06 55.8 54 57.4
Migut.E01531 Erythranthe guttata HOM05D007429 ORTHO05D003505 2.3e-06 55.8 106 39.6
Glyma.18G109000 Glycine max HOM05D006762 ORTHO05D003505 2.3e-06 55.8 93 47.3
PSO173G0075 Papaver somniferum HOM05D007429 ORTHO05D003505 2.3e-06 55.8 94 48.9
PSO824G0083 Papaver somniferum HOM05D007429 ORTHO05D003505 2.3e-06 55.8 94 48.9
BcaB08g37037 Brassica carinata HOM05D007429 ORTHO05D003505 3.0e-06 55.5 105 41.9
CsaV3_3G048540 Cucumis sativus L. HOM05D007429 ORTHO05D003505 3.0e-06 55.5 99 43.4
Duzib168G1390 Durio zibethinus HOM05D007429 ORTHO05D003505 3.0e-06 55.5 88 44.3
HanXRQChr02g0050601 Helianthus annuus HOM05D007429 ORTHO05D003505 3.0e-06 55.5 84 44.0
TPR.G28732 Trifolium pratense HOM05D006762 ORTHO05D022366 3.0e-06 55.5 92 47.8
CSS0037511 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 3.9e-06 55.1 101 43.6
Sabra06G0186100 Salix brachista HOM05D008609 ORTHO05D010987 3.9e-06 55.1 92 43.5
Actinidia13337 Actinidia chinensis HOM05D007429 ORTHO05D003505 5.1e-06 54.7 99 43.4
CSS0002972 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 5.1e-06 54.7 99 39.4
Sp6g31990 Schrenkiella parvula HOM05D007429 ORTHO05D003505 5.1e-06 54.7 105 41.9
AT5G11630 Arabidopsis thaliana HOM05D007429 ORTHO05D003505 6.7e-06 54.3 105 41.9
arahy.Tifrunner.gnm1.ann1.A5XQNM Arachis hypogaea HOM05D006762 ORTHO05D003505 6.7e-06 54.3 97 45.4
ClCG11G015140 Citrullus lanatus HOM05D007429 ORTHO05D003505 6.7e-06 54.3 99 41.4
Gohir.A08G249800 Gossypium hirsutum HOM05D007429 ORTHO05D003505 6.7e-06 54.3 88 46.6
AL6G22340 Arabidopsis lyrata HOM05D007429 ORTHO05D003505 8.7e-06 53.9 105 41.9
BcaC03g13383 Brassica carinata HOM05D007429 ORTHO05D003505 8.7e-06 53.9 93 40.9
C02p05300 Brassica napus HOM05D007429 ORTHO05D003505 8.7e-06 53.9 93 40.9
BolC2t06478H Brassica oleracea HOM05D007429 ORTHO05D003505 8.7e-06 53.9 93 40.9
CiPaw.08G026200 Carya illinoinensis HOM05D007429 ORTHO05D003505 8.7e-06 53.9 105 40.0
MELO3C003465.2 Cucumis melo HOM05D007429 ORTHO05D003505 8.7e-06 53.9 111 36.0
Lj3g0016504 Lotus japonicus HOM05D006762 ORTHO05D022366 8.7e-06 53.9 101 48.5
PSO210G4486 Papaver somniferum HOM05D003477 ORTHO05D004043 8.7e-06 53.9 92 50.0


User provided reference genes

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