Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0211400 Salix brachista HOM05D006526 ORTHO05D008496 1.9e-178 629.0 310 100.0
Potri.001G330100 Populus trichocarpa HOM05D006526 ORTHO05D008496 2.3e-160 568.9 313 90.1
Duzib147G1379 Durio zibethinus HOM05D006526 ORTHO05D008496 2.2e-134 482.6 313 77.3
COL.COLO4_13261 Corchorus olitorius HOM05D006526 ORTHO05D008496 8.7e-131 470.7 313 75.7
Thecc.04G036000 Theobroma cacao HOM05D006526 ORTHO05D008496 1.3e-129 466.8 313 75.1
Manes.15G161000 Manihot esculenta HOM05D006526 ORTHO05D008496 1.4e-128 463.4 313 74.1
CiPaw.03G055600 Carya illinoinensis HOM05D006526 ORTHO05D008496 2.4e-125 452.6 314 75.5
Gohir.D09G036900 Gossypium hirsutum HOM05D006526 ORTHO05D008496 6.0e-124 448.0 313 72.8
Cpa.g.sc171.15 Carica papaya HOM05D006526 ORTHO05D008496 3.9e-123 445.3 303 73.6
Gorai.006G042000 Gossypium raimondii HOM05D006526 ORTHO05D008496 6.7e-123 444.5 313 72.5
Ciclev10015967m.g Citrus clementina HOM05D006526 ORTHO05D008496 8.7e-123 444.1 290 75.5
TWI56G1218 Tripterygium wilfordii HOM05D006526 ORTHO05D008496 1.1e-122 443.7 315 70.8
Dinv33336 Davidia involucrata HOM05D006526 ORTHO05D008496 7.4e-122 441.0 323 67.5
Cfa007227 Carpinus fangiana HOM05D006526 ORTHO05D008496 1.6e-121 439.9 310 72.9
Atru.chr6.2570 Acer truncatum HOM05D006526 ORTHO05D008496 1.5e-119 433.3 315 71.4
PGR042G1209 Punica granatum HOM05D006526 ORTHO05D008496 5.5e-117 424.9 308 67.5
Actinidia05903 Actinidia chinensis HOM05D006526 ORTHO05D008496 9.3e-117 424.1 291 70.8
Eucgr.J02351 Eucalyptus grandis HOM05D006526 ORTHO05D008496 1.6e-116 423.3 302 70.9
Aa31LG5G11040 Aethionema arabicum HOM05D006526 ORTHO05D008496 2.7e-116 422.5 313 67.4
THA.LOC104821121 Tarenaya hassleriana HOM05D006526 ORTHO05D008496 1.3e-115 420.2 272 74.3
GSVIVG01033093001 Vitis vinifera HOM05D006526 ORTHO05D008496 1.9e-114 416.4 272 75.4
Rhsim10G0006300 Rhododendron simsii HOM05D006526 ORTHO05D008496 3.3e-114 415.6 288 71.5
CANSAT64G1234 Cannabis sativa HOM05D006526 ORTHO05D008496 9.6e-114 414.1 300 70.3
A01p25030 Brassica napus HOM05D006526 ORTHO05D008496 1.6e-113 413.3 296 70.3
Prupe.3G306300 Prunus persica HOM05D006526 ORTHO05D008496 1.6e-113 413.3 299 70.2
Sopen02g038780 Solanum pennellii HOM05D006526 ORTHO05D008496 1.6e-113 413.3 299 68.9
Solyc02g094150.4 Solanum lycopersicum HOM05D006526 ORTHO05D008496 2.1e-113 412.9 299 68.9
BraA01t02414Z Brassica rapa HOM05D006526 ORTHO05D008496 4.8e-113 411.8 296 69.6
AT3G01920 Arabidopsis thaliana HOM05D006526 ORTHO05D008496 8.2e-113 411.0 314 65.9
Hma1.2p1_1278F.1_g272280 Hydrangea macrophylla HOM05D006526 ORTHO05D008496 8.2e-113 411.0 301 69.1
Actinidia36203 Actinidia chinensis HOM05D006526 ORTHO05D008496 3.1e-112 409.1 275 72.0
BcaB05g22967 Brassica carinata HOM05D006526 ORTHO05D008496 3.1e-112 409.1 296 69.6
C01p31260 Brassica napus HOM05D006526 ORTHO05D008496 3.1e-112 409.1 296 69.3
MD09G1010800 Malus domestica HOM05D006526 ORTHO05D008496 5.3e-112 408.3 302 68.9
Nitab4.5_0002050g0140 Nicotiana tabacum HOM05D006526 ORTHO05D008496 6.9e-112 407.9 286 68.9
BcaC09g49919 Brassica carinata HOM05D006526 ORTHO05D008496 1.2e-111 407.1 296 68.9
BolC1t03065H Brassica oleracea HOM05D006526 ORTHO05D008496 1.2e-111 407.1 296 68.9
MELO3C014888.2 Cucumis melo HOM05D006526 ORTHO05D008496 1.5e-111 406.8 288 72.6
Nn4g22325 Nelumbo nucifera HOM05D006526 ORTHO05D008496 4.5e-111 405.2 308 67.2
Migut.K01466 Erythranthe guttata HOM05D006526 ORTHO05D008496 1.7e-110 403.3 279 68.8
Peaxi162Scf00420g00560 Petunia axillaris HOM05D006526 ORTHO05D008496 1.7e-110 403.3 276 71.4
RcHm_v2.0_Chr2g0175561 Rosa chinensis HOM05D006526 ORTHO05D008496 3.8e-110 402.1 313 67.1
AL3G10210 Arabidopsis lyrata HOM05D006526 ORTHO05D008496 4.9e-110 401.7 282 70.2
CsaV3_3G027000 Cucumis sativus L. HOM05D006526 ORTHO05D008496 6.5e-110 401.4 292 71.2
FvH4_6g53521 Fragaria vesca HOM05D006526 ORTHO05D008496 8.4e-110 401.0 297 67.7
ClCG05G013530 Citrullus lanatus HOM05D006526 ORTHO05D008496 3.2e-109 399.1 307 68.7
CAN.G473.100 Capsicum annuum HOM05D006526 ORTHO05D008496 4.2e-109 398.7 304 65.5
Sp3g00170 Schrenkiella parvula HOM05D006526 ORTHO05D008496 4.2e-109 398.7 288 68.8
MSTRG.3258 Avicennia marina HOM05D006526 ORTHO05D008496 5.5e-109 398.3 279 69.9
Oeu005097.1 Olea europaea HOM05D006526 ORTHO05D008496 2.1e-108 396.4 245 75.1
vmacro05958 Vaccinium macrocarpon HOM05D006526 ORTHO05D008496 2.1e-108 396.4 287 66.9
Carub.0003s0016 Capsella rubella HOM05D006526 ORTHO05D008496 7.9e-108 394.4 296 66.2
Lalb_Chr14g0363401 Lupinus albus HOM05D006526 ORTHO05D008496 2.3e-107 392.9 276 68.5
Lj1g0010270 Lotus japonicus HOM05D006526 ORTHO05D008496 2.5e-106 389.4 279 69.2
Glyma.19G091200 Glycine max HOM05D006526 ORTHO05D008496 4.3e-106 388.7 291 68.0
Thhalv10000573m.g Eutrema salsugineum HOM05D006526 ORTHO05D008496 2.2e-105 386.3 294 68.0
Phvul.001G093500 Phaseolus vulgaris HOM05D006526 ORTHO05D008496 3.7e-105 385.6 273 69.6
Lju41C52G13 Lonicera japonica HOM05D002875 ORTHO05D003215 4.8e-105 385.2 301 65.1
arahy.Tifrunner.gnm1.ann1.4N5YWB Arachis hypogaea HOM05D006526 ORTHO05D008496 4.1e-104 382.1 324 61.1
arahy.Tifrunner.gnm1.ann1.C96CVE Arachis hypogaea HOM05D006526 ORTHO05D008496 9.0e-104 380.9 324 60.8
Lsat_1_v5_gn_2_93080 Lactuca sativa HOM05D006526 ORTHO05D008496 2.0e-103 379.8 271 66.1
ATR0561G126 Amborella trichopoda HOM05D006526 ORTHO05D008496 2.6e-103 379.4 250 73.6
Cc07_g00840 Coffea canephora HOM05D006526 ORTHO05D008496 4.5e-103 378.6 282 67.4
Nitab4.5_0010204g0040 Nicotiana tabacum HOM05D006526 ORTHO05D008496 1.3e-102 377.1 260 70.0
Psat3g163920 Pisum sativum HOM05D006526 ORTHO05D008496 3.8e-102 375.6 267 69.3
Aqoxy3G01551 Aquilegia oxysepala HOM05D006526 ORTHO05D008496 1.4e-101 373.6 305 62.6
CARHR075020 Cardamine hirsuta HOM05D006526 ORTHO05D008496 1.4e-101 373.6 277 66.1
unitig_88.g27695 Utricularia gibba HOM05D006526 ORTHO05D008496 1.4e-101 373.6 279 65.2
SGA_v2.0_scaffold47G17596 Striga asiatica HOM05D006526 ORTHO05D008496 2.7e-100 369.4 309 61.5
SalBow7G1947 Salvia bowleyana HOM05D006526 ORTHO05D008496 3.6e-100 369.0 324 59.3
CDE05G2481 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 1.3e-99 367.1 263 67.7
ECA238G1207 Erigeron canadensis HOM05D006526 ORTHO05D008496 3.0e-99 365.9 291 62.9
HanXRQChr14g0450751 Helianthus annuus HOM05D006526 ORTHO05D008496 3.0e-99 365.9 276 64.9
PSO017G5829 Papaver somniferum HOM05D006526 ORTHO05D008496 5.1e-99 365.2 293 63.8
Gohir.A09G035700 Gossypium hirsutum HOM05D006526 ORTHO05D008496 1.1e-98 364.0 308 62.7
Haze_14876 Corylus avellana HOM05D006526 ORTHO05D008496 1.5e-98 363.6 311 63.3
PSO478G2106 Papaver somniferum HOM05D006526 ORTHO05D008496 3.3e-98 362.5 293 63.5
AUR62017828 Chenopodium quinoa HOM05D006526 ORTHO05D008496 3.8e-94 349.0 316 56.6
AUR62003516 Chenopodium quinoa HOM05D006526 ORTHO05D008496 5.0e-94 348.6 308 58.1
Os08g0531300 Oryza sativa ssp. japonica HOM05D006526 ORTHO05D008496 1.4e-93 347.1 266 64.3
Hund04346 Selenicereus undatus HOM05D006526 ORTHO05D008496 9.4e-93 344.4 320 56.2
Ah.03g147500 Amaranthus hybridus HOM05D006526 ORTHO05D008496 2.1e-92 343.2 231 71.0
Zm00001eb175140 Zea mays HOM05D006526 ORTHO05D008496 3.0e-91 339.3 293 59.4
CDE06G2358 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 2.0e-87 326.6 266 64.7
MBI11_g23476_MAGBIO Magnolia biondii HOM05D006526 ORTHO05D008496 6.7e-83 311.6 249 64.7
AagrBONN_evm.TU.Sc2ySwM_228.1921 Anthoceros agrestis HOM05D006526 ORTHO05D008496 2.6e-82 309.7 255 61.2
Sed0022734 Sechium edule HOM05D006526 ORTHO05D008496 2.2e-81 306.6 205 73.7
Pp3c2_22020 Physcomitrium patens HOM05D006526 ORTHO05D008496 3.1e-80 302.8 268 56.3
TPR.G14866 Trifolium pratense HOM05D006526 ORTHO05D008496 9.1e-80 301.2 304 52.6
QL02p071425 Quercus lobata HOM05D006526 ORTHO05D008496 1.2e-79 300.8 168 84.5
CSS0009464 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 4.5e-79 298.9 211 73.0
PGSC0003DMG400020254 Solanum tuberosum HOM05D006526 ORTHO05D008496 1.4e-75 287.3 168 78.0
DCAR_000965 Daucus carota HOM05D006526 ORTHO05D008496 2.3e-75 286.6 261 57.5
FAN09G0514 Fragaria x ananassa HOM05D002875 ORTHO05D003215 1.2e-74 284.3 292 54.8
SMO137G0097 Selaginella moellendorffii HOM05D006526 ORTHO05D008496 3.5e-71 272.7 260 52.7
VMungo1383G1669 Vigna mungo HOM05D006526 ORTHO05D008496 4.5e-71 272.3 201 68.2
Sc16g0003120 Simmondsia chinensis HOM05D006526 ORTHO05D008496 2.9e-70 269.6 229 62.4
HPP92_001419 Vanilla planifolia HOM05D005553 ORTHO05D008496 5.2e-67 258.8 213 65.3
FAN05G0398 Fragaria x ananassa HOM05D002875 ORTHO05D003215 1.2e-66 257.7 222 61.3
TAR629G1757 Trochodendron aralioides HOM05D006526 ORTHO05D008496 2.6e-66 256.5 207 66.2
Ca_12965_v3 Cicer arietinum L. HOM05D006526 ORTHO05D008496 3.1e-64 249.6 212 60.4
BcaB05g22970 Brassica carinata HOM05D006526 ORTHO05D008496 3.0e-59 233.0 149 73.8
Glyma.16G056500 Glycine max HOM05D006526 ORTHO05D008496 2.6e-50 203.4 160 66.9
Cre01.g015950 Chlamydomonas reinhardtii HOM05D006526 ORTHO05D008496 1.0e-46 191.4 247 43.7
Medtr7g034590 Medicago truncatula HOM05D006526 ORTHO05D008496 8.6e-46 188.3 229 47.2
ECA236G2817 Erigeron canadensis HOM05D006526 ORTHO05D008496 1.4e-40 171.0 141 59.6
MCO14G032 Micromonas commoda HOM05D006526 ORTHO05D008496 5.4e-40 169.1 233 39.1
QL02p071428 Quercus lobata HOM05D006526 ORTHO05D008496 3.7e-33 146.4 124 62.9
Glyma.16G056450 Glycine max HOM05D006526 ORTHO05D008496 2.4e-32 143.7 106 66.0
FAN02G2201 Fragaria x ananassa HOM05D002323 ORTHO05D002470 2.1e-31 140.6 152 52.0
CDE05G0752 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 2.2e-25 120.6 85 67.1
Medtr6g045607 Medicago truncatula HOM05D006526 ORTHO05D008496 4.6e-23 112.8 73 68.5
CDE05G3548 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 7.8e-23 112.1 75 69.3
CSS0005086 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 1.3e-22 111.3 90 65.6
Ca_12964_v3 Cicer arietinum L. HOM05D006526 ORTHO05D008496 6.4e-17 92.4 75 62.7
EL10Ac8g19274 Beta vulgaris HOM05D006526 ORTHO05D008496 2.4e-16 90.5 68 64.7
C08p24000 Brassica napus HOM05D006526 ORTHO05D024464 4.2e-16 89.7 90 54.4
Medtr6g045617 Medicago truncatula HOM05D006526 ORTHO05D008496 7.1e-16 89.0 61 67.2
BraA06t24956Z Brassica rapa HOM05D006526 ORTHO05D024464 3.5e-15 86.7 101 48.5
BcaB05g22969 Brassica carinata HOM05D006526 ORTHO05D008496 3.0e-14 83.6 55 74.5
BcaC07g39377 Brassica carinata HOM05D006526 ORTHO05D024464 8.7e-14 82.0 83 55.4
CSS0022358 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 3.3e-13 80.1 76 53.9
CSS0047032 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 1.3e-12 78.2 77 51.9
BolC8t50022H Brassica oleracea HOM05D006526 ORTHO05D024464 3.1e-11 73.6 52 67.3
CDE04G1482 Ceratophyllum demersum HOM05D006526 ORTHO05D003215 2.9e-09 67.0 62 56.5
SEGI_11191 Sequoiadendron giganteum HOM05D004609 ORTHO05D005537 1.9e-08 64.3 211 26.5
A06p18730 Brassica napus HOM05D006526 ORTHO05D024464 3.2e-08 63.5 82 45.1
QL06p007766 Quercus lobata HOM05D006526 ORTHO05D008496 7.1e-08 62.4 41 68.3
Lsat_1_v5_gn_5_178620 Lactuca sativa HOM05D004609 ORTHO05D005537 2.1e-07 60.8 203 29.1
PSO339G4039 Papaver somniferum HOM05D004609 ORTHO05D005537 2.1e-07 60.8 207 29.0
HanXRQChr01g0016861 Helianthus annuus HOM05D004609 ORTHO05D005537 2.7e-07 60.5 253 27.3
Sc03g0007720 Simmondsia chinensis HOM05D004609 ORTHO05D005537 2.7e-07 60.5 224 28.6
GSVIVG01025180001 Vitis vinifera HOM05D004609 ORTHO05D005537 2.7e-07 60.5 295 27.1
PGR102G0162 Punica granatum HOM05D004609 ORTHO05D005537 3.5e-07 60.1 206 28.6
Dinv32753 Davidia involucrata HOM05D004609 ORTHO05D005537 4.6e-07 59.7 205 30.2
MSTRG.17807 Avicennia marina HOM05D004609 ORTHO05D005537 6.0e-07 59.3 206 29.1
Cfa011322 Carpinus fangiana HOM05D004609 ORTHO05D005537 6.0e-07 59.3 207 31.9
PSO063G6287 Papaver somniferum HOM05D004609 ORTHO05D005537 6.0e-07 59.3 205 28.3
Haze_10438 Corylus avellana HOM05D004609 ORTHO05D005537 7.9e-07 58.9 206 31.1
Lalb_Chr19g0137311 Lupinus albus HOM05D004609 ORTHO05D005537 7.9e-07 58.9 194 29.4
Atru.chr3.3636 Acer truncatum HOM05D004609 ORTHO05D005537 1.0e-06 58.5 204 30.9
PGSC0003DMG400008104 Solanum tuberosum HOM05D004609 ORTHO05D005537 1.0e-06 58.5 205 28.8
COL.COLO4_18340 Corchorus olitorius HOM05D004609 ORTHO05D005537 1.3e-06 58.2 204 31.4
Eucgr.B02494 Eucalyptus grandis HOM05D004609 ORTHO05D005537 1.8e-06 57.8 203 30.0
Gorai.013G266600 Gossypium raimondii HOM05D004609 ORTHO05D005537 1.8e-06 57.8 206 29.6
HPP92_018599 Vanilla planifolia HOM05D004609 ORTHO05D005537 1.8e-06 57.8 198 26.3
Ciclev10029204m.g Citrus clementina HOM05D004609 ORTHO05D005537 2.3e-06 57.4 230 27.8
Dinv32752 Davidia involucrata HOM05D004609 ORTHO05D005537 2.3e-06 57.4 205 29.8
Nn2g13092 Nelumbo nucifera HOM05D004609 ORTHO05D005537 2.3e-06 57.4 212 28.8
PSO017G0942 Papaver somniferum HOM05D004609 ORTHO05D005537 2.3e-06 57.4 203 28.6
RcHm_v2.0_Chr5g0059481 Rosa chinensis HOM05D004609 ORTHO05D005537 2.3e-06 57.4 222 28.4
TAR633G2157 Trochodendron aralioides HOM05D004609 ORTHO05D005537 2.3e-06 57.4 206 29.6
CAN.G631.22 Capsicum annuum HOM05D004609 ORTHO05D005537 3.0e-06 57.0 246 27.6
MBI07_g19316_MAGBIO Magnolia biondii HOM05D004609 ORTHO05D005537 3.0e-06 57.0 221 24.9
ATR0115G025 Amborella trichopoda HOM05D004609 ORTHO05D005537 3.9e-06 56.6 211 27.0
MELO3C026847.2 Cucumis melo HOM05D004609 ORTHO05D005537 3.9e-06 56.6 207 29.5
FAN21G1816 Fragaria x ananassa HOM05D004609 ORTHO05D005537 3.9e-06 56.6 250 27.6
Gohir.D13G235900 Gossypium hirsutum HOM05D004609 ORTHO05D005537 3.9e-06 56.6 194 28.9
Aqoxy3G03284 Aquilegia oxysepala HOM05D004609 ORTHO05D005537 5.1e-06 56.2 210 27.6
Cc01_g11180 Coffea canephora HOM05D004609 ORTHO05D005537 5.1e-06 56.2 205 28.8
FvH4_3g32470 Fragaria vesca HOM05D004609 ORTHO05D005537 5.1e-06 56.2 219 28.3
Lj3g0003868 Lotus japonicus HOM05D004609 ORTHO05D005537 5.1e-06 56.2 224 27.7
AUR62001379 Chenopodium quinoa HOM05D004609 ORTHO05D005537 6.7e-06 55.8 229 27.1
DCAR_006058 Daucus carota HOM05D004609 ORTHO05D005537 6.7e-06 55.8 203 29.6
Solyc11g069360.2 Solanum lycopersicum HOM05D004609 ORTHO05D005537 6.7e-06 55.8 205 28.3
Sopen11g028080 Solanum pennellii HOM05D004609 ORTHO05D005537 6.7e-06 55.8 205 28.3
DCAR_013489 Daucus carota HOM05D004609 ORTHO05D005537 8.7e-06 55.5 203 29.6
FAN11G0836 Fragaria x ananassa HOM05D004609 ORTHO05D005537 8.7e-06 55.5 250 27.2
Gohir.A13G230400 Gossypium hirsutum HOM05D004609 ORTHO05D005537 8.7e-06 55.5 206 29.1
Prupe.6G100900 Prunus persica HOM05D004609 ORTHO05D005537 8.7e-06 55.5 206 28.2


User provided reference genes

Program Settings