Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0200700 Salix brachista HOM05D005061 ORTHO05D006001 1.8e-62 243.0 186 100.0
Potri.001G317300 Populus trichocarpa HOM05D005061 ORTHO05D006001 1.6e-55 219.9 186 93.5
Duzib212G0867 Durio zibethinus HOM05D005061 ORTHO05D006001 4.5e-34 148.7 184 60.3
Ciclev10005973m.g Citrus clementina HOM05D005061 ORTHO05D006001 3.8e-33 145.6 187 64.2
Prupe.1G159300 Prunus persica HOM05D005061 ORTHO05D006001 2.1e-31 139.8 189 52.4
Manes.02G208300 Manihot esculenta HOM05D005061 ORTHO05D006001 2.3e-30 136.3 182 47.3
Manes.10G081400 Manihot esculenta HOM05D005061 ORTHO05D006001 2.3e-30 136.3 182 47.8
Atru.chr4.1296 Acer truncatum HOM05D005061 ORTHO05D006001 4.0e-30 135.6 181 55.8
Cpa.g.sc150.53 Carica papaya HOM05D005061 ORTHO05D006001 1.2e-29 134.0 192 50.5
Psat6g003280 Pisum sativum HOM05D005061 ORTHO05D006001 3.4e-29 132.5 182 43.4
Cpa.g.sc170.49 Carica papaya HOM05D005061 ORTHO05D006001 2.8e-28 129.4 186 44.6
Sp2g19580 Schrenkiella parvula HOM05D005061 ORTHO05D006001 2.8e-28 129.4 186 53.8
CSS0003459 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 6.3e-28 128.3 186 47.3
MD14G1080700 Malus domestica HOM05D005061 ORTHO05D006001 6.3e-28 128.3 188 48.9
MD12G1086100 Malus domestica HOM05D005061 ORTHO05D006001 1.4e-27 127.1 187 50.3
Aa31LG11G8230 Aethionema arabicum HOM05D005061 ORTHO05D006001 2.4e-27 126.3 174 46.0
THA.LOC104808705 Tarenaya hassleriana HOM05D005061 ORTHO05D006001 2.4e-27 126.3 184 59.2
TPR.G1371 Trifolium pratense HOM05D005061 ORTHO05D006001 2.4e-27 126.3 174 43.1
Dinv38211 Davidia involucrata HOM05D005061 ORTHO05D006001 3.1e-27 125.9 185 44.9
PGR042G2541 Punica granatum HOM05D005061 ORTHO05D006001 3.1e-27 125.9 195 45.6
Thhalv10004918m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 7.0e-27 124.8 186 41.9
Gohir.D10G140500 Gossypium hirsutum HOM05D005061 ORTHO05D006001 7.0e-27 124.8 174 43.1
Gohir.A10G126200 Gossypium hirsutum HOM05D005061 ORTHO05D006001 9.1e-27 124.4 174 47.1
Lj1g0023949 Lotus japonicus HOM05D005061 ORTHO05D006001 9.1e-27 124.4 181 45.3
TPR.G26387 Trifolium pratense HOM05D005061 ORTHO05D006001 1.2e-26 124.0 182 41.2
CANSAT78G0571 Cannabis sativa HOM05D005061 ORTHO05D006001 1.6e-26 123.6 191 48.2
Lj1g0014719 Lotus japonicus HOM05D005061 ORTHO05D006001 1.6e-26 123.6 181 45.3
COL.COLO4_20183 Corchorus olitorius HOM05D005061 ORTHO05D006001 2.7e-26 122.9 179 42.5
TWI34G0245 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 2.7e-26 122.9 183 60.7
FAN17G0047 Fragaria x ananassa HOM05D005061 ORTHO05D006001 5.9e-26 121.7 187 48.1
QL07p041720 Quercus lobata HOM05D005061 ORTHO05D006001 7.7e-26 121.3 194 50.0
TAR624G0493 Trochodendron aralioides HOM05D002455 ORTHO05D006001 1.7e-25 120.2 188 42.0
BcaC06g30707 Brassica carinata HOM05D005061 ORTHO05D006001 2.3e-25 119.8 172 41.3
BraA06t26765Z Brassica rapa HOM05D005061 ORTHO05D006001 2.3e-25 119.8 176 42.0
Glyma.08G364400 Glycine max HOM05D005061 ORTHO05D006001 2.3e-25 119.8 175 42.9
Gorai.011G156100 Gossypium raimondii HOM05D005061 ORTHO05D006001 2.3e-25 119.8 168 42.9
Carub.0008s0903 Capsella rubella HOM05D005061 ORTHO05D006001 2.9e-25 119.4 172 42.4
Lalb_Chr01g0000091 Lupinus albus HOM05D005061 ORTHO05D006001 2.9e-25 119.4 172 41.3
RcHm_v2.0_Chr4g0414321 Rosa chinensis HOM05D005061 ORTHO05D006001 2.9e-25 119.4 185 47.6
PGSC0003DMG400015756 Solanum tuberosum HOM05D005061 ORTHO05D006001 2.9e-25 119.4 162 58.6
VMungo1383G0426 Vigna mungo HOM05D005061 ORTHO05D006001 2.9e-25 119.4 169 66.3
Cc03_g08040 Coffea canephora HOM05D005061 ORTHO05D006001 3.8e-25 119.0 183 44.8
Solyc05g053730.3 Solanum lycopersicum HOM05D005061 ORTHO05D006001 3.8e-25 119.0 180 53.9
Sopen05g032210 Solanum pennellii HOM05D005061 ORTHO05D006001 3.8e-25 119.0 180 53.9
BcaNung02589 Brassica carinata HOM05D005061 ORTHO05D006001 5.0e-25 118.6 166 43.4
C07p39760 Brassica napus HOM05D005061 ORTHO05D006001 5.0e-25 118.6 166 43.4
A06p38500 Brassica napus HOM05D005061 ORTHO05D006001 6.6e-25 118.2 176 41.5
Lj8A15T45 Lonicera japonica HOM05D005061 ORTHO05D006001 6.6e-25 118.2 180 41.7
Phvul.008G004900 Phaseolus vulgaris HOM05D005061 ORTHO05D006001 6.6e-25 118.2 178 57.3
Eucgr.G02600 Eucalyptus grandis HOM05D005061 ORTHO05D006001 8.6e-25 117.9 156 50.6
CARHR182460 Cardamine hirsuta HOM05D005061 ORTHO05D006001 1.1e-24 117.5 183 39.9
Ca_04063_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 1.1e-24 117.5 182 48.4
Ca_04069_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 1.1e-24 117.5 182 48.4
TAR636G2803 Trochodendron aralioides HOM05D005061 ORTHO05D006001 1.1e-24 117.5 188 42.0
FvH4_4g13570 Fragaria vesca HOM05D005061 ORTHO05D006001 1.5e-24 117.1 189 48.1
FAN22G0582 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.5e-24 117.1 189 47.1
CAN.G765.25 Capsicum annuum HOM05D005061 ORTHO05D006001 2.5e-24 116.3 162 61.1
arahy.Tifrunner.gnm1.ann1.B38FIW Arachis hypogaea HOM05D005061 ORTHO05D006001 5.5e-24 115.2 154 67.5
arahy.Tifrunner.gnm1.ann1.V03Z72 Arachis hypogaea HOM05D005061 ORTHO05D006001 5.5e-24 115.2 154 67.5
QL01p037004 Quercus lobata HOM05D005061 ORTHO05D006001 5.5e-24 115.2 199 51.3
Sed0002608 Sechium edule HOM05D005061 ORTHO05D006001 5.5e-24 115.2 187 55.1
FAN07G0218 Fragaria x ananassa HOM05D005061 ORTHO05D006001 9.5e-24 114.4 189 47.1
Nitab4.5_0003502g0080 Nicotiana tabacum HOM05D005061 ORTHO05D006001 1.6e-23 113.6 159 62.3
AL8G22790 Arabidopsis lyrata HOM05D005061 ORTHO05D006001 4.7e-23 112.1 172 40.1
Glyma.18G297700 Glycine max HOM05D005061 ORTHO05D006001 4.7e-23 112.1 168 42.3
AT5G49210 Arabidopsis thaliana HOM05D005061 ORTHO05D006001 8.0e-23 111.3 172 39.5
BcaB07g34140 Brassica carinata HOM05D005061 ORTHO05D006001 1.0e-22 110.9 166 51.2
Medtr7g407030 Medicago truncatula HOM05D005061 ORTHO05D006001 1.0e-22 110.9 176 49.4
CiPaw.01G118900 Carya illinoinensis HOM05D005061 ORTHO05D006001 1.4e-22 110.5 191 64.9
Peaxi162Scf00423g00316 Petunia axillaris HOM05D005061 ORTHO05D006001 3.0e-22 109.4 155 56.8
BcaC03g17706 Brassica carinata HOM05D005061 ORTHO05D006001 5.2e-22 108.6 184 39.1
C02p57130 Brassica napus HOM05D005061 ORTHO05D006001 5.2e-22 108.6 184 39.1
BraA02t08777Z Brassica rapa HOM05D005061 ORTHO05D006001 5.2e-22 108.6 184 46.7
Haze_11630 Corylus avellana HOM05D005061 ORTHO05D006001 5.2e-22 108.6 189 59.8
Hma1.2p1_0383F.1_g140630 Hydrangea macrophylla HOM05D005061 ORTHO05D006001 5.2e-22 108.6 172 44.2
Nitab4.5_0002260g0170 Nicotiana tabacum HOM05D005061 ORTHO05D006001 5.2e-22 108.6 159 66.7
A02p37930 Brassica napus HOM05D005061 ORTHO05D006001 2.0e-21 106.7 184 46.7
HanXRQChr13g0420931 Helianthus annuus HOM05D005061 ORTHO05D006001 2.0e-21 106.7 157 52.2
Psat3g206160 Pisum sativum HOM05D005061 ORTHO05D006001 3.4e-21 105.9 162 46.9
SGA_v2.0_scaffold90G27899 Striga asiatica HOM05D005061 ORTHO05D006001 3.4e-21 105.9 169 39.1
BcaB04g19598 Brassica carinata HOM05D005061 ORTHO05D006001 9.8e-21 104.4 172 51.7
Medtr1g025570 Medicago truncatula HOM05D005061 ORTHO05D006001 9.8e-21 104.4 178 37.6
SGA_v2.0_scaffold128G34119 Striga asiatica HOM05D005061 ORTHO05D006001 1.3e-20 104.0 173 38.2
CDE07G0811 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 2.2e-20 103.2 159 38.4
Cfa014943 Carpinus fangiana HOM05D005061 ORTHO05D006001 2.8e-20 102.8 195 57.4
Migut.G00717 Erythranthe guttata HOM05D005061 ORTHO05D006001 3.7e-20 102.4 179 36.3
GSVIVG01020921001 Vitis vinifera HOM05D005061 ORTHO05D006001 3.7e-20 102.4 167 53.9
Thecc.04G199600 Theobroma cacao HOM05D005061 ORTHO05D006001 4.9e-20 102.1 189 51.3
CDE04G1543 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 6.3e-20 101.7 168 36.3
BolC2t11785H Brassica oleracea HOM05D005061 ORTHO05D006001 3.1e-19 99.4 213 38.5
Sc19g0007290 Simmondsia chinensis HOM05D005061 ORTHO05D006001 7.0e-19 98.2 168 50.6
MSTRG.9809 Avicennia marina HOM05D005061 ORTHO05D006001 1.2e-18 97.4 168 40.5
ECA247G1905 Erigeron canadensis HOM05D005061 ORTHO05D006001 1.6e-18 97.1 175 36.6
PSO541G4502 Papaver somniferum HOM05D005061 ORTHO05D006001 2.0e-18 96.7 159 36.5
PSO675G5536 Papaver somniferum HOM05D005061 ORTHO05D006001 4.5e-18 95.5 159 35.8
unitig_26.g9510 Utricularia gibba HOM05D005061 ORTHO05D006001 4.5e-18 95.5 174 36.8
Dinv27216 Davidia involucrata HOM05D005061 ORTHO05D006001 6.6e-17 91.7 185 50.3
TWI34G1372 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 8.6e-17 91.3 184 56.0
BcaB07g34141 Brassica carinata HOM05D005061 ORTHO05D006001 7.3e-16 88.2 176 41.5
SalBow8G4870 Salvia bowleyana HOM05D005061 ORTHO05D006001 9.5e-16 87.8 150 37.3
HPP92_021062 Vanilla planifolia HOM05D005061 ORTHO05D006001 9.5e-16 87.8 156 33.3
Aqoxy1G01140 Aquilegia oxysepala HOM05D005061 ORTHO05D006001 1.2e-15 87.4 153 49.0
Migut.N00403 Erythranthe guttata HOM05D005061 ORTHO05D006001 2.1e-15 86.7 178 44.9
Atru.chr4.1292 Acer truncatum HOM05D005061 ORTHO05D006001 4.7e-15 85.5 89 51.7
Actinidia23412 Actinidia chinensis HOM05D005061 ORTHO05D006001 8.0e-15 84.7 183 53.6
Hund18997 Selenicereus undatus HOM05D005061 ORTHO05D006001 1.4e-14 84.0 189 38.1
EL10Ac9g22415 Beta vulgaris HOM05D005061 ORTHO05D006001 1.8e-14 83.6 170 37.6
MELO3C006306.2 Cucumis melo HOM05D005061 ORTHO05D006001 4.0e-14 82.4 198 44.4
BolC7t44502H Brassica oleracea HOM05D005061 ORTHO05D006001 8.9e-14 81.3 72 62.5
Rhsim02G0060400 Rhododendron simsii HOM05D005061 ORTHO05D006001 5.8e-13 78.6 214 30.4
MSTRG.4232 Avicennia marina HOM05D005061 ORTHO05D006001 7.5e-13 78.2 158 41.8
AUR62006500 Chenopodium quinoa HOM05D005061 ORTHO05D006001 9.8e-13 77.8 167 38.3
CsaV3_3G010880 Cucumis sativus L. HOM05D005061 ORTHO05D006001 1.7e-12 77.0 95 47.4
Os11g0148600 Oryza sativa ssp. japonica HOM05D005061 ORTHO05D006001 2.2e-12 76.6 156 32.1
arahy.Tifrunner.gnm1.ann1.FDW9Z4 Arachis hypogaea HOM05D005061 ORTHO05D006001 3.7e-12 75.9 177 47.5
Ah.09g228330 Amaranthus hybridus HOM05D005061 ORTHO05D006001 4.9e-12 75.5 167 47.3
vmacro15554 Vaccinium macrocarpon HOM05D005061 ORTHO05D006001 1.1e-11 74.3 250 31.2
EL10Ac9g22416 Beta vulgaris HOM05D005061 ORTHO05D006001 1.4e-11 73.9 165 35.8
Zm00001eb092840 Zea mays HOM05D005061 ORTHO05D006001 2.4e-11 73.2 188 35.6
Lsat_1_v5_gn_2_46320 Lactuca sativa HOM05D005061 ORTHO05D006001 4.1e-11 72.4 182 52.7
FAN12G0303 Fragaria x ananassa HOM05D005061 ORTHO05D006001 4.6e-10 68.9 52 67.3
Oeu025020.1 Olea europaea HOM05D005061 ORTHO05D006001 6.0e-10 68.6 87 55.2
ATR0745G004 Amborella trichopoda HOM05D005061 ORTHO05D006001 7.8e-10 68.2 163 53.4
Thhalv10009372m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 3.0e-09 66.2 69 47.8
AUR62025033 Chenopodium quinoa HOM05D005061 ORTHO05D006001 5.0e-09 65.5 208 30.8
Oeu006186.1 Olea europaea HOM05D005061 ORTHO05D006001 3.3e-08 62.8 105 38.1
CSS0041532 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 2.1e-07 60.1 70 47.1
CSS0044809 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 2.1e-07 60.1 70 47.1
arahy.Tifrunner.gnm1.ann1.J1UTGX Arachis hypogaea HOM05D005061 ORTHO05D016631 3.6e-07 59.3 99 70.7
DCAR_026627 Daucus carota HOM05D005061 ORTHO05D006001 3.6e-07 59.3 125 44.8
Lj3P401T12 Lonicera japonica HOM05D005061 ORTHO05D006001 4.7e-07 58.9 41 61.0
arahy.Tifrunner.gnm1.ann1.KB0HQZ Arachis hypogaea HOM05D005061 ORTHO05D006001 8.0e-07 58.2 99 61.6
Lsat_1_v5_gn_6_60821 Lactuca sativa HOM05D005061 ORTHO05D006001 1.8e-06 57.0 153 54.9
arahy.Tifrunner.gnm1.ann1.IKZ5YQ Arachis hypogaea HOM05D000225 ORTHO05D001595 3.1e-06 56.2 99 36.4
SEGI_31023 Sequoiadendron giganteum HOM05D005061 ORTHO05D006001 5.2e-06 55.5 150 27.3


User provided reference genes

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