Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0195100 Salix brachista HOM05D005663 ORTHO05D007258 3.2e-139 498.4 256 100.0
Potri.001G309300 Populus trichocarpa HOM05D005663 ORTHO05D007258 7.2e-107 391.0 227 89.0
Manes.13G086600 Manihot esculenta HOM05D005663 ORTHO05D007258 3.7e-79 298.9 227 68.7
Ciclev10026263m.g Citrus clementina HOM05D005663 ORTHO05D007258 2.5e-67 259.6 224 65.6
Hma1.2p1_0006F.1_g004880 Hydrangea macrophylla HOM05D005663 ORTHO05D007258 5.6e-67 258.5 225 64.9
FAN19G1272 Fragaria x ananassa HOM05D005663 ORTHO05D007258 1.8e-65 253.4 245 60.4
FAN26G2344 Fragaria x ananassa HOM05D005663 ORTHO05D007258 4.0e-65 252.3 229 62.4
TAR625G0848 Trochodendron aralioides HOM05D005663 ORTHO05D007258 6.8e-65 251.5 224 62.5
FvH4_1g23570 Fragaria vesca HOM05D005663 ORTHO05D007258 1.5e-64 250.4 225 63.1
QL06p051868 Quercus lobata HOM05D005663 ORTHO05D007258 4.4e-64 248.8 230 59.1
RcHm_v2.0_Chr2g0119121 Rosa chinensis HOM05D005663 ORTHO05D007258 7.5e-64 248.1 225 60.4
Thecc.01G121000 Theobroma cacao HOM05D005663 ORTHO05D007258 4.9e-63 245.4 185 68.1
Duzib264G0763 Durio zibethinus HOM05D005663 ORTHO05D007258 1.9e-62 243.4 220 59.5
Atru.chr4.540 Acer truncatum HOM05D005663 ORTHO05D007258 4.1e-62 242.3 261 55.9
Haze_25195 Corylus avellana HOM05D005663 ORTHO05D007258 7.1e-62 241.5 224 59.4
Nn5g28726 Nelumbo nucifera HOM05D005663 ORTHO05D007258 9.2e-62 241.1 233 58.8
TWI75G0275 Tripterygium wilfordii HOM05D005663 ORTHO05D007258 4.6e-61 238.8 225 60.0
CiPaw.03G123800 Carya illinoinensis HOM05D005663 ORTHO05D007258 6.0e-61 238.4 220 58.6
Eucgr.I00244 Eucalyptus grandis HOM05D005663 ORTHO05D007258 1.0e-60 237.7 177 68.9
PGR119G0285 Punica granatum HOM05D005663 ORTHO05D007258 1.7e-60 236.9 215 61.4
GSVIVG01026586001 Vitis vinifera HOM05D005663 ORTHO05D007258 3.9e-60 235.7 201 62.7
Aqoxy3G02633 Aquilegia oxysepala HOM05D005663 ORTHO05D007258 6.6e-60 235.0 171 69.6
Dinv09933 Davidia involucrata HOM05D005663 ORTHO05D007258 6.6e-60 235.0 209 64.6
COL.COLO4_22418 Corchorus olitorius HOM05D005663 ORTHO05D007258 8.6e-60 234.6 228 58.3
Haze_25191 Corylus avellana HOM05D005663 ORTHO05D007258 2.5e-59 233.0 224 58.5
TAR381G0497 Trochodendron aralioides HOM05D005663 ORTHO05D007258 3.3e-59 232.6 208 60.6
vmacro18658 Vaccinium macrocarpon HOM05D005663 ORTHO05D007258 2.8e-58 229.6 233 59.7
Gohir.A06G149400 Gossypium hirsutum HOM05D005663 ORTHO05D007258 6.2e-58 228.4 183 63.4
Gohir.D06G155500 Gossypium hirsutum HOM05D005663 ORTHO05D007258 1.8e-57 226.9 183 63.4
Gorai.010G181700 Gossypium raimondii HOM05D005663 ORTHO05D007258 4.0e-57 225.7 183 62.8
Actinidia06667 Actinidia chinensis HOM05D005663 ORTHO05D007258 8.9e-57 224.6 223 60.1
Gorai.002G151300 Gossypium raimondii HOM05D005663 ORTHO05D007258 2.9e-55 219.5 172 65.1
MD15G1343200 Malus domestica HOM05D005663 ORTHO05D007258 8.4e-55 218.0 146 74.0
Duzib147G1259 Durio zibethinus HOM05D005663 ORTHO05D007258 2.4e-54 216.5 155 70.3
Lj4g0014342 Lotus japonicus HOM05D005663 ORTHO05D007258 9.2e-54 214.5 177 63.8
Lsat_1_v5_gn_4_138241 Lactuca sativa HOM05D005663 ORTHO05D007258 1.2e-53 214.2 231 52.8
Cc07_g17370 Coffea canephora HOM05D005663 ORTHO05D007258 2.7e-53 213.0 232 53.0
Oeu047646.1 Olea europaea HOM05D005663 ORTHO05D007258 6.0e-53 211.8 223 57.0
TPR.G2176 Trifolium pratense HOM05D005663 ORTHO05D007258 1.0e-52 211.1 173 64.2
Glyma.08G146300 Glycine max HOM05D005663 ORTHO05D007258 5.1e-52 208.8 225 52.4
HanXRQChr15g0490251 Helianthus annuus HOM05D005663 ORTHO05D007258 5.1e-52 208.8 231 51.5
PSO541G2505 Papaver somniferum HOM05D005663 ORTHO05D007258 1.1e-51 207.6 176 63.1
ECA238G2757 Erigeron canadensis HOM05D005663 ORTHO05D007258 1.5e-51 207.2 142 69.7
Sc03g0004740 Simmondsia chinensis HOM05D005663 ORTHO05D007258 1.5e-51 207.2 239 52.3
MBI09_g20114_MAGBIO Magnolia biondii HOM05D005663 ORTHO05D007258 1.9e-51 206.8 142 73.2
Medtr8g092680 Medicago truncatula HOM05D005663 ORTHO05D007258 1.9e-51 206.8 225 54.2
SalBow2G3104 Salvia bowleyana HOM05D005663 ORTHO05D007258 3.3e-51 206.1 142 73.9
MBI09_g18623_MAGBIO Magnolia biondii HOM05D005663 ORTHO05D007258 5.6e-51 205.3 142 72.5
Carub.0006s0824 Capsella rubella HOM05D005663 ORTHO05D007258 1.2e-50 204.1 225 49.3
Sp6g33590 Schrenkiella parvula HOM05D005663 ORTHO05D007258 2.8e-50 203.0 174 59.2
PSO675G3544 Papaver somniferum HOM05D005663 ORTHO05D007258 4.7e-50 202.2 177 61.0
AL6G20230 Arabidopsis lyrata HOM05D005663 ORTHO05D007258 8.1e-50 201.4 174 59.2
Phvul.002G269000 Phaseolus vulgaris HOM05D005663 ORTHO05D007258 8.1e-50 201.4 173 61.8
Nitab4.5_0002064g0060 Nicotiana tabacum HOM05D005663 ORTHO05D007258 1.1e-49 201.1 232 54.3
Glyma.05G188200 Glycine max HOM05D005663 ORTHO05D007258 1.4e-49 200.7 225 51.1
Sopen11g001350 Solanum pennellii HOM05D005663 ORTHO05D007258 1.8e-49 200.3 222 52.3
VMungo0251G2076 Vigna mungo HOM05D005663 ORTHO05D007258 2.4e-49 199.9 173 60.1
THA.LOC104818465 Tarenaya hassleriana HOM05D005663 ORTHO05D007258 3.1e-49 199.5 167 59.9
Solyc11g005340.3 Solanum lycopersicum HOM05D005663 ORTHO05D007258 4.0e-49 199.1 224 54.0
BraA03t09772Z Brassica rapa HOM05D005663 ORTHO05D007258 5.3e-49 198.7 174 56.9
CDE04G2754 Ceratophyllum demersum HOM05D005663 ORTHO05D007258 5.3e-49 198.7 176 58.5
Thhalv10014407m.g Eutrema salsugineum HOM05D005663 ORTHO05D007258 5.3e-49 198.7 230 50.0
Psat7g048760 Pisum sativum HOM05D005663 ORTHO05D007258 1.5e-48 197.2 226 50.9
Peaxi162Scf00025g02122 Petunia axillaris HOM05D005663 ORTHO05D007258 2.0e-48 196.8 251 48.2
BolC3t13007H Brassica oleracea HOM05D005663 ORTHO05D007258 2.6e-48 196.4 175 57.1
AT5G09820 Arabidopsis thaliana HOM05D005663 ORTHO05D007258 4.4e-48 195.7 177 57.6
CARHR203580 Cardamine hirsuta HOM05D005663 ORTHO05D007258 4.4e-48 195.7 167 59.9
Atru.chr4.1055 Acer truncatum HOM05D005663 ORTHO05D007258 1.3e-47 194.1 229 51.1
SGA_v2.0_scaffold137G35114 Striga asiatica HOM05D005663 ORTHO05D007258 2.9e-47 193.0 165 63.0
Hund03480 Selenicereus undatus HOM05D005663 ORTHO05D007258 4.9e-47 192.2 222 50.5
Aa31LG3G17290 Aethionema arabicum HOM05D005663 ORTHO05D007258 1.1e-46 191.0 174 57.5
A03p04280 Brassica napus HOM05D005663 ORTHO05D007258 1.1e-46 191.0 224 47.8
Atru.chr4.1044 Acer truncatum HOM05D005663 ORTHO05D007258 2.4e-46 189.9 229 50.7
C03p04720 Brassica napus HOM05D005663 ORTHO05D007258 2.4e-46 189.9 176 55.7
unitig_899.g14706 Utricularia gibba HOM05D005663 ORTHO05D007258 7.1e-46 188.3 138 68.1
CDE12G0169 Ceratophyllum demersum HOM05D005663 ORTHO05D007258 2.1e-45 186.8 176 56.8
Nitab4.5_0009320g0020 Nicotiana tabacum HOM05D005663 ORTHO05D007258 2.7e-45 186.4 247 48.6
Migut.H01114 Erythranthe guttata HOM05D005663 ORTHO05D007258 4.6e-45 185.7 149 64.4
PGSC0003DMG400003986 Solanum tuberosum HOM05D005663 ORTHO05D007258 4.6e-45 185.7 130 72.3
arahy.Tifrunner.gnm1.ann1.YJV2YZ Arachis hypogaea HOM05D005663 ORTHO05D007258 6.0e-45 185.3 179 56.4
Os04g0422000 Oryza sativa ssp. japonica HOM05D005663 ORTHO05D007258 1.7e-44 183.7 155 61.9
Ca_17664_v3 Cicer arietinum L. HOM05D005663 ORTHO05D007258 6.6e-44 181.8 157 61.8
Zm00001eb083210 Zea mays HOM05D005663 ORTHO05D007258 6.6e-44 181.8 151 62.3
Haze_25187 Corylus avellana HOM05D005663 ORTHO05D007258 1.5e-43 180.6 117 76.9
Lalb_Chr12g0203331 Lupinus albus HOM05D005663 ORTHO05D007258 2.5e-43 179.9 156 61.5
HPP92_016149 Vanilla planifolia HOM05D005663 ORTHO05D007258 2.4e-41 173.3 192 52.1
BcaNung05557 Brassica carinata HOM05D005663 ORTHO05D007258 4.0e-41 172.6 175 52.0
Pp3c3_12020 Physcomitrium patens HOM05D005663 ORTHO05D007258 4.0e-41 172.6 167 55.1
arahy.Tifrunner.gnm1.ann1.B1HTRM Arachis hypogaea HOM05D005663 ORTHO05D007258 5.3e-41 172.2 152 62.5
Rhsim08G0003400 Rhododendron simsii HOM05D005663 ORTHO05D007258 5.8e-40 168.7 190 53.7
SEGI_39378 Sequoiadendron giganteum HOM05D005663 ORTHO05D007258 3.8e-39 166.0 202 47.0
RcHm_v2.0_Chr2g0119061 Rosa chinensis HOM05D005663 ORTHO05D007258 8.4e-39 164.9 110 74.5
Lj4A856T34 Lonicera japonica HOM05D005663 ORTHO05D007258 4.6e-37 159.1 182 52.2
Mapoly0058s0022 Marchantia polymorpha HOM05D005663 ORTHO05D007258 1.3e-36 157.5 142 56.3
Cpa.g.c33395.2 Carica papaya HOM05D005663 ORTHO05D007258 5.1e-36 155.6 172 54.1
CANSAT01G3211 Cannabis sativa HOM05D005663 ORTHO05D007258 1.1e-35 154.5 218 44.5
arahy.Tifrunner.gnm1.ann1.6JE7GZ Arachis hypogaea HOM05D005663 ORTHO05D007258 1.9e-35 153.7 175 50.9
COL.COLO4_22420 Corchorus olitorius HOM05D005663 ORTHO05D007258 1.9e-35 153.7 154 57.8
arahy.Tifrunner.gnm1.ann1.ILAW0V Arachis hypogaea HOM05D005663 ORTHO05D007258 4.8e-34 149.1 175 49.1
arahy.Tifrunner.gnm1.ann1.67XQRG Arachis hypogaea HOM05D005663 ORTHO05D007258 2.4e-33 146.7 175 49.1
SMO358G0575 Selaginella moellendorffii HOM05D005663 ORTHO05D007258 3.1e-33 146.4 128 59.4
Thecc.01G121200 Theobroma cacao HOM05D005663 ORTHO05D007258 1.2e-32 144.4 233 42.1
arahy.Tifrunner.gnm1.ann1.4DFA8P Arachis hypogaea HOM05D005663 ORTHO05D007258 1.5e-32 144.1 162 51.9
arahy.Tifrunner.gnm1.ann1.3896ZX Arachis hypogaea HOM05D005663 ORTHO05D007258 9.9e-32 141.4 126 58.7
Prupe.6G163100 Prunus persica HOM05D005663 ORTHO05D007258 1.7e-31 140.6 227 41.9
Cre03.g188700 Chlamydomonas reinhardtii HOM05D005663 ORTHO05D007258 3.8e-31 139.4 142 50.7
DCAR_027256 Daucus carota HOM05D005663 ORTHO05D007258 8.4e-31 138.3 124 58.9
CAN.G249.7 Capsicum annuum HOM05D005663 ORTHO05D007258 1.8e-28 130.6 91 68.1
EL10Ac6g15254 Beta vulgaris HOM05D005663 ORTHO05D007258 2.1e-26 123.6 211 39.3
CSS0035922 Camellia sinensis var. sinensis HOM05D005663 ORTHO05D007258 4.5e-24 115.9 139 51.1
Ah.03g146600 Amaranthus hybridus HOM05D005663 ORTHO05D007258 1.3e-23 114.4 128 49.2
FAN23G0034 Fragaria x ananassa HOM05D005663 ORTHO05D007258 4.6e-21 105.9 139 49.6
Mapoly0060s0002 Marchantia polymorpha HOM05D005663 ORTHO05D007258 5.3e-17 92.4 77 59.7
PRCOL_00005152 Prasinoderma coloniale HOM05D004534 ORTHO05D005413 1.6e-13 80.9 152 36.2
arahy.Tifrunner.gnm1.ann1.2XR3X5 Arachis hypogaea HOM05D005663 ORTHO05D007258 6.1e-13 79.0 126 39.7
arahy.Tifrunner.gnm1.ann1.A2IFSH Arachis hypogaea HOM05D005663 ORTHO05D007258 6.1e-13 79.0 63 55.6
arahy.Tifrunner.gnm1.ann1.I27Z20 Arachis hypogaea HOM05D005663 ORTHO05D007258 6.1e-13 79.0 63 55.6
arahy.Tifrunner.gnm1.ann1.UQF3WB Arachis hypogaea HOM05D005663 ORTHO05D007258 6.1e-13 79.0 63 55.6
arahy.Tifrunner.gnm1.ann1.E1FWBU Arachis hypogaea HOM05D005663 ORTHO05D007258 7.9e-13 78.6 61 57.4
arahy.Tifrunner.gnm1.ann1.SHST7E Arachis hypogaea HOM05D005663 ORTHO05D007258 3.3e-11 73.2 130 38.5
CSS0003387 Camellia sinensis var. sinensis HOM05D005663 ORTHO05D007258 1.3e-10 71.2 61 59.0
MD01G1001300 Malus domestica HOM05D005663 ORTHO05D007258 1.1e-09 68.2 136 36.8
Dinv15112 Davidia involucrata HOM05D005663 ORTHO05D007258 1.8e-09 67.4 42 76.2
FvH4_1g28530 Fragaria vesca HOM05D005663 ORTHO05D007258 9.1e-09 65.1 38 76.3
FAN19G2811 Fragaria x ananassa HOM05D005663 ORTHO05D007258 9.1e-09 65.1 38 76.3
GSVIVG01027851001 Vitis vinifera HOM05D006432 ORTHO05D008257 9.4e-06 55.1 148 28.4


User provided reference genes

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