Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0185800 Salix brachista HOM05D006481 ORTHO05D008160 0.0e+00 1484.5 901 100.0
Potri.001G296700 Populus trichocarpa HOM05D006481 ORTHO05D008160 5.9e-297 1024.2 763 83.9
Potri.009G090900 Populus trichocarpa HOM05D006481 ORTHO05D008160 1.8e-261 906.4 757 77.9
Sabra09G0070200 Salix brachista HOM05D006481 ORTHO05D008160 7.4e-215 751.5 727 71.7
Manes.10G058310 Manihot esculenta HOM05D006481 ORTHO05D008160 1.6e-164 584.3 833 53.2
TWI14G1262 Tripterygium wilfordii HOM05D006481 ORTHO05D008160 3.4e-159 566.6 862 51.4
CiPaw.05G015400 Carya illinoinensis HOM05D006481 ORTHO05D008160 7.3e-154 548.9 830 48.8
Cfa004657 Carpinus fangiana HOM05D006481 ORTHO05D008160 4.0e-152 543.1 827 51.4
Thecc.02G113600 Theobroma cacao HOM05D006481 ORTHO05D008160 1.6e-140 504.6 814 49.4
QL11p031947 Quercus lobata HOM05D006481 ORTHO05D008160 1.3e-139 501.5 863 51.4
Gohir.D12G020600 Gossypium hirsutum HOM05D006481 ORTHO05D008160 2.3e-139 500.7 814 46.9
Haze_10252 Corylus avellana HOM05D006481 ORTHO05D008160 3.9e-139 500.0 822 49.8
Dinv15788 Davidia involucrata HOM05D006481 ORTHO05D008160 8.1e-137 492.3 859 48.5
COL.COLO4_32543 Corchorus olitorius HOM05D006481 ORTHO05D008160 2.6e-135 487.3 811 46.4
Actinidia34372 Actinidia chinensis HOM05D006481 ORTHO05D008160 4.4e-135 486.5 765 49.9
Duzib132G1015 Durio zibethinus HOM05D006481 ORTHO05D008160 3.2e-133 480.3 789 49.0
Gohir.A12G020400 Gossypium hirsutum HOM05D006481 ORTHO05D008160 3.2e-133 480.3 769 49.2
Gorai.008G021000 Gossypium raimondii HOM05D006481 ORTHO05D008160 1.6e-132 478.0 769 48.2
TAR376G0872 Trochodendron aralioides HOM05D006481 ORTHO05D008160 2.4e-128 464.2 856 43.3
Prupe.8G140600 Prunus persica HOM05D006481 ORTHO05D008160 2.2e-126 457.6 841 48.4
vmacro01976 Vaccinium macrocarpon HOM05D006481 ORTHO05D008160 3.8e-126 456.8 711 48.4
Dinv42219 Davidia involucrata HOM05D006481 ORTHO05D008160 1.1e-125 455.3 874 45.8
RcHm_v2.0_Chr6g0252931 Rosa chinensis HOM05D006481 ORTHO05D008160 1.9e-125 454.5 833 49.7
Cpa.g.sc106.79 Carica papaya HOM05D006481 ORTHO05D008160 2.3e-123 447.6 516 55.0
FAN15G2146 Fragaria x ananassa HOM05D006481 ORTHO05D008160 1.6e-121 441.4 830 48.4
FvH4_2g03900 Fragaria vesca HOM05D006481 ORTHO05D008160 4.0e-120 436.8 833 48.4
FAN27G2785 Fragaria x ananassa HOM05D006481 ORTHO05D008160 5.3e-120 436.4 833 48.0
arahy.Tifrunner.gnm1.ann1.RQ9967 Arachis hypogaea HOM05D006481 ORTHO05D008160 1.5e-119 434.9 748 46.7
arahy.Tifrunner.gnm1.ann1.IH69Y8 Arachis hypogaea HOM05D006481 ORTHO05D008160 2.7e-116 424.1 724 45.4
Lj5A217G88 Lonicera japonica HOM05D006481 ORTHO05D008160 6.7e-115 419.5 856 45.4
Medtr1g106795 Medicago truncatula HOM05D006481 ORTHO05D008160 2.5e-114 417.5 780 46.7
Lj5g0022753 Lotus japonicus HOM05D006481 ORTHO05D008160 1.3e-113 415.2 774 46.3
MD05G1096200 Malus domestica HOM05D006481 ORTHO05D008160 1.3e-113 415.2 809 45.1
DCAR_021965 Daucus carota HOM05D006481 ORTHO05D008160 3.7e-113 413.7 945 41.0
CSS0020952 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 1.8e-112 411.4 821 42.5
MELO3C017986.2 Cucumis melo HOM05D006481 ORTHO05D008160 2.6e-111 407.5 785 42.9
CSS0029586 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 2.2e-110 404.4 821 42.1
Ciclev10027845m.g Citrus clementina HOM05D006481 ORTHO05D008160 2.2e-110 404.4 808 41.1
Aqoxy6G02732 Aquilegia oxysepala HOM05D006481 ORTHO05D008160 1.2e-108 398.7 511 51.9
Ca_11047_v3 Cicer arietinum L. HOM05D006481 ORTHO05D008160 1.2e-108 398.7 766 45.3
VMungo0720G0067 Vigna mungo HOM05D006481 ORTHO05D008160 1.2e-108 398.7 788 45.3
Glyma.20G132200 Glycine max HOM05D006481 ORTHO05D008160 1.6e-108 398.3 667 51.9
Nitab4.5_0004685g0050 Nicotiana tabacum HOM05D006481 ORTHO05D008160 1.8e-107 394.8 827 44.0
Lalb_Chr02g0145111 Lupinus albus HOM05D006481 ORTHO05D008160 5.1e-107 393.3 791 44.9
Sed0008985 Sechium edule HOM05D006481 ORTHO05D008160 8.7e-107 392.5 845 40.2
CsaV3_4G000490 Cucumis sativus L. HOM05D006481 ORTHO05D008160 1.9e-106 391.3 789 43.6
Nitab4.5_0001105g0200 Nicotiana tabacum HOM05D006481 ORTHO05D008160 9.6e-106 389.0 793 44.6
Atru.BG.62.p Acer truncatum HOM05D006481 ORTHO05D008160 2.8e-105 387.5 433 56.1
MSTRG.16692 Avicennia marina HOM05D006481 ORTHO05D008160 1.4e-104 385.2 901 38.1
Oeu021369.1 Olea europaea HOM05D006481 ORTHO05D008160 3.1e-104 384.0 763 42.7
PSO675G3182 Papaver somniferum HOM05D006481 ORTHO05D008160 2.2e-102 377.9 502 49.8
Cc02_g30880 Coffea canephora HOM05D006481 ORTHO05D008160 1.1e-101 375.6 853 39.9
PSO541G1903 Papaver somniferum HOM05D006481 ORTHO05D008160 1.4e-101 375.2 503 50.3
TPR.G27130 Trifolium pratense HOM05D006481 ORTHO05D008160 1.4e-101 375.2 763 45.2
Rhsim11G0154700 Rhododendron simsii HOM05D006481 ORTHO05D008160 2.5e-101 374.4 671 45.2
GSVIVG01037865001 Vitis vinifera HOM05D006481 ORTHO05D008160 5.5e-101 373.2 436 54.8
RhsimUnG0125900 Rhododendron simsii HOM05D006481 ORTHO05D008160 2.3e-99 367.9 682 44.7
CAN.G606.42 Capsicum annuum HOM05D006481 ORTHO05D008160 3.9e-99 367.1 891 39.4
TAR628G0609 Trochodendron aralioides HOM05D006481 ORTHO05D008160 3.9e-99 367.1 499 49.7
AUR62027350 Chenopodium quinoa HOM05D006481 ORTHO05D008160 7.4e-98 362.8 662 43.5
Aa31LG10G4220 Aethionema arabicum HOM05D006481 ORTHO05D008160 9.7e-98 362.5 759 46.0
AUR62031332 Chenopodium quinoa HOM05D006481 ORTHO05D008160 9.7e-98 362.5 648 43.7
EL10Ac8g19363 Beta vulgaris HOM05D006481 ORTHO05D008160 2.4e-96 357.8 759 41.8
Sopen01g049510 Solanum pennellii HOM05D006481 ORTHO05D008160 5.3e-96 356.7 888 40.3
Phvul.007G043300 Phaseolus vulgaris HOM05D006481 ORTHO05D008160 6.9e-96 356.3 710 45.6
SalBow6G0734 Salvia bowleyana HOM05D006481 ORTHO05D008160 4.5e-95 353.6 667 48.0
Ah.14g085520 Amaranthus hybridus HOM05D006481 ORTHO05D008160 1.7e-94 351.7 806 43.2
Solyc01g107260.4 Solanum lycopersicum HOM05D006481 ORTHO05D008160 2.2e-94 351.3 904 39.5
Thhalv10011233m.g Eutrema salsugineum HOM05D006481 ORTHO05D008160 3.2e-93 347.4 778 41.1
Psat6g216240 Pisum sativum HOM05D006481 ORTHO05D008160 2.1e-92 344.7 720 44.4
THA.LOC104825834 Tarenaya hassleriana HOM05D006481 ORTHO05D008160 6.1e-92 343.2 841 40.9
ClCG10G010570 Citrullus lanatus HOM05D006481 ORTHO05D008160 7.9e-92 342.8 689 39.6
A08p03520 Brassica napus HOM05D006481 ORTHO05D008160 3.3e-90 337.4 448 49.3
AT1G49870 Arabidopsis thaliana HOM05D006481 ORTHO05D008160 2.8e-89 334.3 758 44.5
AL1G57410 Arabidopsis lyrata HOM05D006481 ORTHO05D008160 8.2e-89 332.8 769 43.7
BolC8t47171H Brassica oleracea HOM05D006481 ORTHO05D008160 5.3e-88 330.1 444 48.9
ECA234G0568 Erigeron canadensis HOM05D006481 ORTHO05D008160 5.3e-88 330.1 429 47.8
Sp1g36750 Schrenkiella parvula HOM05D006481 ORTHO05D008160 9.1e-88 329.3 789 39.8
unitig_744.g24217 Utricularia gibba HOM05D006481 ORTHO05D008160 3.4e-87 327.4 747 39.6
BraA08t32385Z Brassica rapa HOM05D006481 ORTHO05D008160 4.2e-85 320.5 441 48.3
C08p03680 Brassica napus HOM05D006481 ORTHO05D008160 5.5e-85 320.1 442 51.4
Migut.B00421 Erythranthe guttata HOM05D006481 ORTHO05D008160 6.1e-84 316.6 755 37.0
Carub.0001s3908 Capsella rubella HOM05D006481 ORTHO05D008160 8.8e-83 312.8 773 37.8
Eucgr.I01079 Eucalyptus grandis HOM05D006481 ORTHO05D008160 7.4e-82 309.7 692 44.7
BcaB04g17289 Brassica carinata HOM05D006481 ORTHO05D008160 1.3e-81 308.9 758 40.2
CARHR039920 Cardamine hirsuta HOM05D006481 ORTHO05D008160 4.1e-80 303.9 691 44.1
HanXRQChr16g0514441 Helianthus annuus HOM05D006481 ORTHO05D008160 7.0e-80 303.1 348 53.2
SGA_v2.0_scaffold225G43011 Striga asiatica HOM05D006481 ORTHO05D008160 1.2e-79 302.4 768 40.2
Lsat_1_v5_gn_5_114361 Lactuca sativa HOM05D006481 ORTHO05D008160 2.7e-76 291.2 474 41.6
Zm00001eb050130 Zea mays HOM05D006481 ORTHO05D008160 4.7e-76 290.4 412 48.1
Os03g0604600 Oryza sativa ssp. japonica HOM05D006481 ORTHO05D008160 8.0e-76 289.7 414 47.8
ATR0030G005 Amborella trichopoda HOM05D006481 ORTHO05D008160 2.3e-75 288.1 423 48.9
PGSC0003DMG400025848 Solanum tuberosum HOM05D006481 ORTHO05D008160 1.3e-73 282.3 879 37.1
HPP92_017760 Vanilla planifolia HOM05D006481 ORTHO05D008160 5.2e-67 260.4 388 45.9
Peaxi162Scf00016g02732 Petunia axillaris HOM05D006481 ORTHO05D008160 1.8e-59 235.3 703 35.8
CDE04G1272 Ceratophyllum demersum HOM05D006481 ORTHO05D008160 1.2e-52 212.6 321 44.5
Sc14g0002570 Simmondsia chinensis HOM05D006481 ORTHO05D008160 4.7e-52 210.7 578 40.5
SEGI_11188 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 6.4e-41 173.7 624 30.0
SEGI_37018 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 6.4e-41 173.7 624 30.0
FAN20G1292 Fragaria x ananassa HOM05D006481 ORTHO05D008160 2.3e-38 165.2 524 43.5
SEGI_25924 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 8.3e-33 146.7 303 40.6
Pp3c18_18840 Physcomitrium patens HOM05D006481 ORTHO05D008160 1.2e-31 142.9 359 38.2
MD10G1102400 Malus domestica HOM05D006481 ORTHO05D008160 5.1e-30 137.5 120 64.2
EL10Ac6g13964 Beta vulgaris HOM05D006481 ORTHO05D008160 2.1e-28 132.1 196 45.9
SMO196G0099 Selaginella moellendorffii HOM05D006481 ORTHO05D008160 6.2e-28 130.6 275 37.8
MD10G1102500 Malus domestica HOM05D006481 ORTHO05D008160 8.4e-25 120.2 162 49.4
Hma1.2p1_1361F.1_g278150 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 1.1e-24 119.8 169 50.3
SHI05066 Sapria himalayana HOM05D006481 ORTHO05D008160 1.9e-24 119.0 128 56.2
CBR_g49330 Chara braunii HOM05D006481 ORTHO05D008160 4.3e-21 107.8 164 42.7
Duzib052G0964 Durio zibethinus HOM05D006481 ORTHO05D008160 8.9e-19 100.1 124 50.0
Hma1.2p1_0000F.1_g001000 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 2.7e-15 88.6 98 58.2
SHI05065 Sapria himalayana HOM05D006481 ORTHO05D008160 4.8e-12 77.8 105 50.5
RcHm_v2.0_Chr4g0423461 Rosa chinensis HOM05D006481 ORTHO05D000001 1.1e-11 76.6 111 46.8
Oeu039499.1 Olea europaea HOM05D006481 ORTHO05D008160 1.4e-11 76.3 111 56.8
SGA_v2.0_scaffold4001G54416 Striga asiatica HOM05D006481 ORTHO05D008160 2.4e-11 75.5 178 38.8
TAR628G0206 Trochodendron aralioides HOM05D006481 ORTHO05D008160 2.2e-09 68.9 337 32.3
Hma1.2p1_0883F.1_g232290 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 4.2e-08 64.7 62 62.9
Atru.chr5.2411 Acer truncatum HOM05D006481 ORTHO05D008160 2.3e-06 58.9 148 35.8
BcaC05g27423 Brassica carinata HOM05D006481 ORTHO05D008160 3.0e-06 58.5 56 51.8


User provided reference genes

Program Settings