Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0170200 Salix brachista HOM05D004084 ORTHO05D004662 1.4e-112 409.8 242 100.0
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 4.6e-47 192.2 153 75.8
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 1.8e-43 180.3 153 73.2
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 3.4e-42 176.0 154 66.9
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 8.8e-38 161.4 160 59.4
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 4.4e-37 159.1 153 59.5
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 1.3e-36 157.5 156 60.9
Haze_23226 Corylus avellana HOM05D004084 ORTHO05D004662 1.3e-36 157.5 153 60.1
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 1.7e-36 157.1 153 65.4
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 2.8e-36 156.4 153 60.8
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 1.4e-35 154.1 154 59.1
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 2.4e-35 153.3 153 62.7
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 7.0e-35 151.8 153 60.1
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 7.0e-35 151.8 153 65.4
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 9.1e-35 151.4 153 57.5
MD03G1166600 Malus domestica HOM05D004084 ORTHO05D004662 9.1e-35 151.4 153 57.5
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 9.1e-35 151.4 153 57.5
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 1.6e-34 150.6 153 64.7
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 1.6e-34 150.6 153 64.7
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 2.0e-34 150.2 152 65.1
QL01p017232 Quercus lobata HOM05D004084 ORTHO05D004662 2.0e-34 150.2 153 58.8
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 2.6e-34 149.8 157 58.6
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 4.5e-34 149.1 145 57.2
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 7.7e-34 148.3 155 55.5
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 7.7e-34 148.3 156 62.2
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 5.0e-33 145.6 145 55.9
TWI79G0099 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 1.9e-32 143.7 153 52.9
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 4.2e-32 142.5 154 60.4
CSS0029213 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 9.4e-32 141.4 154 54.5
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 9.4e-32 141.4 153 54.2
Actinidia06961 Actinidia chinensis HOM05D004084 ORTHO05D004662 1.2e-31 141.0 152 54.6
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 1.6e-31 140.6 153 54.2
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 3.6e-31 139.4 153 63.4
DCAR_023764 Daucus carota HOM05D000857 ORTHO05D004662 4.7e-31 139.0 155 53.5
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 4.7e-31 139.0 153 61.4
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 4.7e-31 139.0 153 61.4
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 6.1e-31 138.7 156 56.4
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 8.0e-31 138.3 153 53.6
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 8.0e-31 138.3 153 55.6
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 1.0e-30 137.9 148 55.4
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 1.4e-30 137.5 167 56.3
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 1.4e-30 137.5 153 55.6
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 1.4e-30 137.5 153 52.3
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 1.8e-30 137.1 160 53.1
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 2.3e-30 136.7 156 59.0
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 6.7e-30 135.2 153 59.5
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 6.7e-30 135.2 153 51.0
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 1.5e-29 134.0 153 51.0
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 1.5e-29 134.0 153 51.0
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 2.6e-29 133.3 156 54.5
Phvul.006G030800 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 2.6e-29 133.3 148 54.1
COL.COLO4_35673 Corchorus olitorius HOM05D004084 ORTHO05D004662 3.3e-29 132.9 153 58.8
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 4.4e-29 132.5 153 60.1
Hund21983 Selenicereus undatus HOM05D004084 ORTHO05D004662 5.7e-29 132.1 165 55.8
Oeu061709.1 Olea europaea HOM05D004084 ORTHO05D004662 7.5e-29 131.7 157 50.3
MBI13_g27798_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 1.3e-28 131.0 163 50.3
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 3.7e-28 129.4 161 52.2
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 3.7e-28 129.4 169 47.3
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 6.3e-28 128.6 169 50.3
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 6.3e-28 128.6 158 62.7
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 8.2e-28 128.3 164 50.6
CSS0040984 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.1e-27 127.9 155 64.5
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 1.1e-27 127.9 161 51.6
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 1.1e-27 127.9 171 52.0
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 1.4e-27 127.5 165 49.7
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 1.4e-27 127.5 156 51.3
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 1.8e-27 127.1 149 50.3
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 2.4e-27 126.7 162 56.8
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 2.4e-27 126.7 153 58.2
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 3.1e-27 126.3 153 58.2
AUR62000187 Chenopodium quinoa HOM05D004084 ORTHO05D004662 4.1e-27 125.9 170 51.8
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 5.3e-27 125.6 158 58.2
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 5.3e-27 125.6 150 50.7
arahy.Tifrunner.gnm1.ann1.QA9X4A Arachis hypogaea HOM05D004084 ORTHO05D004662 7.0e-27 125.2 158 57.6
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 7.0e-27 125.2 153 55.6
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 9.1e-27 124.8 153 57.5
TPR.G27271 Trifolium pratense HOM05D004084 ORTHO05D004662 2.7e-26 123.2 95 73.7
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 4.5e-26 122.5 162 48.1
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 5.9e-26 122.1 158 60.1
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 1.0e-25 121.3 161 49.7
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 1.3e-25 120.9 160 57.5
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 1.3e-25 120.9 167 47.3
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 2.2e-25 120.2 89 75.3
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 3.8e-25 119.4 170 51.2
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 5.0e-25 119.0 159 47.2
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 8.5e-25 118.2 153 64.7
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 3.2e-24 116.3 202 47.5
SEGI_38021 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 9.4e-24 114.8 156 49.4
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 2.7e-23 113.2 156 48.7
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 2.7e-23 113.2 156 48.7
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 4.7e-23 112.5 169 52.1
CDE11G0877 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 6.1e-23 112.1 153 46.4
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 6.1e-23 112.1 160 55.6
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 1.8e-22 110.5 163 46.6
ATR0680G173 Amborella trichopoda HOM05D004084 ORTHO05D004662 2.3e-22 110.2 154 44.2
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 2.3e-22 110.2 154 50.0
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 3.0e-22 109.8 156 53.8
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 6.8e-22 108.6 170 47.1
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 8.8e-22 108.2 154 51.3
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 1.2e-21 107.8 154 51.3
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 1.5e-21 107.5 167 48.5
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 1.5e-21 107.5 172 47.7
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 9.8e-21 104.8 176 46.0
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 1.3e-20 104.4 147 47.6
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 1.3e-20 104.4 147 47.6
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 2.2e-20 103.6 154 49.4
unitig_8.g3650 Utricularia gibba HOM05D004084 ORTHO05D000654 3.7e-20 102.8 139 46.0
PSO339G4433 Papaver somniferum HOM05D004084 ORTHO05D004662 3.1e-19 99.8 158 43.7
PSO384G1598 Papaver somniferum HOM05D004084 ORTHO05D004662 7.0e-19 98.6 152 45.4
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 7.0e-19 98.6 154 59.1
CARHR193510 Cardamine hirsuta HOM05D004084 ORTHO05D004662 9.1e-19 98.2 166 44.0
Aqoxy2G00377 Aquilegia oxysepala HOM05D004084 ORTHO05D004662 2.0e-18 97.1 78 71.8
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 7.7e-18 95.1 164 47.0
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 7.7e-18 95.1 166 50.0
SalBow6G0813 Salvia bowleyana HOM05D004084 ORTHO05D004662 1.0e-17 94.7 73 65.8
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 1.0e-17 94.7 180 40.6
AUR62006538 Chenopodium quinoa HOM05D001938 ORTHO05D001965 1.3e-17 94.4 97 60.8
AL6G23110 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 2.2e-17 93.6 161 55.9
AL6G30920 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 3.8e-17 92.8 179 42.5
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 5.0e-17 92.4 163 55.8
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 5.0e-17 92.4 163 57.1
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 5.0e-17 92.4 158 47.5
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 1.1e-16 91.3 179 41.9
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 4.2e-16 89.4 166 41.6
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 4.2e-16 89.4 166 41.6
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 7.2e-16 88.6 166 41.6
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 7.2e-16 88.6 166 41.6
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 3.6e-15 86.3 166 41.6
SHI55208 Sapria himalayana HOM05D004084 ORTHO05D004662 4.7e-15 85.9 146 46.6
Pp3c26_14330 Physcomitrium patens HOM05D004084 ORTHO05D004662 8.0e-15 85.1 156 41.7
arahy.Tifrunner.gnm1.ann1.57BBZ5 Arachis hypogaea HOM05D004084 ORTHO05D004662 3.0e-14 83.2 102 58.8
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 4.0e-14 82.8 160 40.6
Nn7g36696 Nelumbo nucifera HOM05D004084 ORTHO05D004662 1.5e-13 80.9 108 53.7
CDE11G0903 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 3.4e-13 79.7 115 40.9
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 1.7e-12 77.4 113 45.1
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 8.3e-12 75.1 112 43.8
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 8.3e-12 75.1 112 43.8
SEGI_32483 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 1.8e-11 73.9 128 40.6
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 7.0e-11 72.0 111 51.4
SMO337G0017 Selaginella moellendorffii HOM05D004084 ORTHO05D004662 1.0e-09 68.2 143 37.8
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 2.9e-09 66.6 169 41.4
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 5.0e-09 65.9 169 42.6
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 1.5e-08 64.3 170 36.5
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 1.9e-08 63.9 160 37.5
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 3.3e-08 63.2 168 41.1
AagrBONN_evm.TU.Sc2ySwM_228.3727 Anthoceros agrestis HOM05D004084 ORTHO05D004662 4.3e-08 62.8 96 43.8
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 4.3e-08 62.8 169 42.0
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 4.3e-08 62.8 111 48.6
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 9.5e-08 61.6 168 40.5
CBR_g131 Chara braunii HOM05D004084 ORTHO05D004662 2.8e-07 60.1 146 37.0
arahy.Tifrunner.gnm1.ann1.F7NEFJ Arachis hypogaea HOM05D004084 ORTHO05D004662 4.7e-07 59.3 65 61.5
arahy.Tifrunner.gnm1.ann1.K0L3ZW Arachis hypogaea HOM05D004084 ORTHO05D004662 4.7e-07 59.3 65 61.5
Nn7g36697 Nelumbo nucifera HOM05D004084 ORTHO05D004662 1.8e-06 57.4 85 54.1
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 2.3e-06 57.0 171 38.6


User provided reference genes

Program Settings