Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0167000 Salix brachista HOM05D005230 ORTHO05D006506 1.1e-243 846.3 459 100.0
Potri.001G271800 Populus trichocarpa HOM05D005230 ORTHO05D006506 2.3e-236 822.0 459 96.9
Potri.009G066400 Populus trichocarpa HOM05D005230 ORTHO05D006506 2.3e-220 768.8 460 91.7
Sabra09G0049500 Salix brachista HOM05D005230 ORTHO05D006506 6.6e-212 740.7 460 88.5
Manes.05G199900 Manihot esculenta HOM05D005230 ORTHO05D006506 3.7e-202 708.4 459 84.7
Manes.01G177100 Manihot esculenta HOM05D005230 ORTHO05D006506 3.0e-196 688.7 460 83.5
Prupe.4G269500 Prunus persica HOM05D005230 ORTHO05D006506 5.1e-196 688.0 459 83.0
TWI75G0256 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 9.0e-193 677.2 459 80.2
Eucgr.B03758 Eucalyptus grandis HOM05D005230 ORTHO05D006506 2.2e-191 672.5 459 81.0
MD03G1163000 Malus domestica HOM05D005230 ORTHO05D006506 2.2e-191 672.5 459 81.9
CiPaw.13G147000 Carya illinoinensis HOM05D005230 ORTHO05D006506 3.8e-191 671.8 458 81.9
QL01p016185 Quercus lobata HOM05D005230 ORTHO05D006506 6.5e-191 671.0 459 82.4
CSS0035138 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 4.6e-189 664.8 460 80.7
CSS0009799 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 6.1e-189 664.5 460 80.4
COL.COLO4_33253 Corchorus olitorius HOM05D005230 ORTHO05D006506 1.3e-188 663.3 459 79.5
Lj4g0004497 Lotus japonicus HOM05D005230 ORTHO05D006506 1.3e-188 663.3 462 79.2
CANSAT54G1170 Cannabis sativa HOM05D005230 ORTHO05D006506 3.0e-188 662.1 459 80.4
Atru.chr3.2845 Acer truncatum HOM05D005230 ORTHO05D006506 5.1e-188 661.4 461 75.7
Thecc.09G252100 Theobroma cacao HOM05D005230 ORTHO05D006506 1.1e-187 660.2 459 79.3
GSVIVG01020254001 Vitis vinifera HOM05D005230 ORTHO05D006506 2.5e-187 659.1 459 80.0
Cpa.g.sc34.203 Carica papaya HOM05D005230 ORTHO05D006506 7.4e-187 657.5 459 80.6
Dinv29329 Davidia involucrata HOM05D005230 ORTHO05D006506 9.7e-187 657.1 460 80.9
Haze_23295 Corylus avellana HOM05D005230 ORTHO05D006506 3.7e-186 655.2 459 80.6
Nn7g36961 Nelumbo nucifera HOM05D005230 ORTHO05D006506 1.1e-185 653.7 462 78.6
TPR.G24369 Trifolium pratense HOM05D005230 ORTHO05D006506 1.4e-185 653.3 458 78.6
Glyma.08G113500 Glycine max HOM05D005230 ORTHO05D006506 9.1e-185 650.6 460 79.1
Phvul.002G235800 Phaseolus vulgaris HOM05D005230 ORTHO05D006506 2.6e-184 649.0 460 78.7
Psat7g073480 Pisum sativum HOM05D005230 ORTHO05D006506 3.4e-184 648.7 460 78.3
Lalb_Chr07g0186541 Lupinus albus HOM05D005230 ORTHO05D006506 7.7e-184 647.5 460 78.7
TWI31G0483 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 2.2e-183 646.0 459 78.0
Cc01_g07300 Coffea canephora HOM05D005230 ORTHO05D006506 2.9e-183 645.6 460 79.6
Haze_23300 Corylus avellana HOM05D005230 ORTHO05D006506 2.9e-183 645.6 503 70.0
Aqoxy1G00076 Aquilegia oxysepala HOM05D005230 ORTHO05D006506 5.0e-183 644.8 461 77.0
FAN23G0348 Fragaria x ananassa HOM05D005230 ORTHO05D006506 5.0e-183 644.8 459 78.0
ECA238G4724 Erigeron canadensis HOM05D005230 ORTHO05D006506 6.5e-183 644.4 461 78.3
Duzib168G0825 Durio zibethinus HOM05D005230 ORTHO05D006506 1.9e-182 642.9 458 77.3
FvH4_1g25390 Fragaria vesca HOM05D005230 ORTHO05D006506 5.5e-182 641.3 459 77.8
Glyma.05G155700 Glycine max HOM05D005230 ORTHO05D006506 9.4e-182 640.6 460 78.3
Actinidia16258 Actinidia chinensis HOM05D005230 ORTHO05D006506 1.6e-181 639.8 461 78.5
FAN28G1729 Fragaria x ananassa HOM05D005230 ORTHO05D006506 7.9e-181 637.5 459 77.1
Rhsim13G0231000 Rhododendron simsii HOM05D005230 ORTHO05D006506 1.4e-180 636.7 461 77.9
Actinidia06848 Actinidia chinensis HOM05D005230 ORTHO05D006506 1.8e-180 636.3 461 78.1
arahy.Tifrunner.gnm1.ann1.554KFZ Arachis hypogaea HOM05D005230 ORTHO05D006506 2.3e-180 636.0 459 72.1
arahy.Tifrunner.gnm1.ann1.YWPQ0A Arachis hypogaea HOM05D005230 ORTHO05D006506 2.3e-180 636.0 459 72.1
Oeu025950.1 Olea europaea HOM05D005230 ORTHO05D006506 2.3e-180 636.0 461 76.8
Ca_17953_v3 Cicer arietinum L. HOM05D005230 ORTHO05D006506 3.9e-180 635.2 459 77.8
RcHm_v2.0_Chr2g0123421 Rosa chinensis HOM05D005230 ORTHO05D006506 6.7e-180 634.4 459 77.6
Medtr8g085640 Medicago truncatula HOM05D005230 ORTHO05D006506 1.1e-179 633.6 456 77.6
Ciclev10015197m.g Citrus clementina HOM05D005230 ORTHO05D006506 3.3e-179 632.1 462 77.3
VMungo0251G0349 Vigna mungo HOM05D005230 ORTHO05D006506 9.7e-179 630.6 454 78.0
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.3e-178 630.2 458 76.6
ClCG03G014290 Citrullus lanatus HOM05D005230 ORTHO05D006506 3.7e-178 628.6 459 75.8
Lsat_1_v5_gn_2_32160 Lactuca sativa HOM05D005230 ORTHO05D006506 3.7e-178 628.6 461 77.4
Duzib150G1312 Durio zibethinus HOM05D005230 ORTHO05D006506 6.3e-178 627.9 459 76.5
Cfa009930 Carpinus fangiana HOM05D005230 ORTHO05D006506 8.2e-178 627.5 438 80.6
DCAR_031608 Daucus carota HOM05D005230 ORTHO05D006506 8.2e-178 627.5 460 76.1
CAN.G280.6 Capsicum annuum HOM05D005230 ORTHO05D006506 1.0e-175 620.5 460 76.1
CsaV3_1G041930 Cucumis sativus L. HOM05D005230 ORTHO05D006506 2.9e-175 619.0 459 75.2
Sed0024170 Sechium edule HOM05D005230 ORTHO05D006506 3.8e-175 618.6 459 76.0
MSTRG.21320 Avicennia marina HOM05D005230 ORTHO05D006506 8.5e-175 617.5 460 74.6
Hund07409 Selenicereus undatus HOM05D005230 ORTHO05D006506 3.2e-174 615.5 464 74.1
THA.LOC104811208 Tarenaya hassleriana HOM05D005230 ORTHO05D006506 1.2e-173 613.6 460 74.1
MELO3C015608.2 Cucumis melo HOM05D005230 ORTHO05D006506 2.7e-173 612.5 459 74.5
PGSC0003DMG400027416 Solanum tuberosum HOM05D005230 ORTHO05D006506 6.1e-173 611.3 460 75.4
Sopen11g029740 Solanum pennellii HOM05D005230 ORTHO05D006506 1.0e-172 610.5 460 75.0
Gorai.004G013700 Gossypium raimondii HOM05D005230 ORTHO05D006506 3.0e-172 609.0 459 76.0
PSO339G0973 Papaver somniferum HOM05D005230 ORTHO05D006506 3.9e-172 608.6 461 74.8
Solyc11g072090.2 Solanum lycopersicum HOM05D005230 ORTHO05D006506 3.9e-172 608.6 460 74.8
Gohir.D08G019200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.1e-171 607.1 459 75.8
PSO384G0943 Papaver somniferum HOM05D005230 ORTHO05D006506 2.0e-171 606.3 461 74.6
Aa31LG1G8850 Aethionema arabicum HOM05D005230 ORTHO05D006506 5.7e-171 604.7 460 71.7
Peaxi162Scf00978g00317 Petunia axillaris HOM05D005230 ORTHO05D006506 2.2e-170 602.8 460 73.7
HanXRQChr13g0402151 Helianthus annuus HOM05D005230 ORTHO05D006506 1.8e-169 599.7 459 73.2
AUR62006575 Chenopodium quinoa HOM05D005230 ORTHO05D006506 2.4e-169 599.4 465 74.0
AUR62000229 Chenopodium quinoa HOM05D005230 ORTHO05D006506 4.1e-169 598.6 465 73.5
Gohir.A08G009200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 5.3e-169 598.2 459 75.4
SGA_v2.0_scaffold29G12151 Striga asiatica HOM05D005230 ORTHO05D006506 5.3e-169 598.2 460 71.7
Oeu032061.2 Olea europaea HOM05D005230 ORTHO05D006506 1.7e-167 593.2 490 70.6
SalBow6G0054 Salvia bowleyana HOM05D005230 ORTHO05D006506 3.8e-167 592.0 481 69.0
FAN26G2809 Fragaria x ananassa HOM05D005230 ORTHO05D006506 5.5e-166 588.2 548 65.0
A10p20220 Brassica napus HOM05D005230 ORTHO05D006506 2.1e-165 586.3 461 71.4
A02p05570 Brassica napus HOM05D005230 ORTHO05D006506 1.4e-164 583.6 456 72.4
Gorai.006G123300 Gossypium raimondii HOM05D005230 ORTHO05D006506 1.4e-164 583.6 459 72.8
ATR0307G025 Amborella trichopoda HOM05D005230 ORTHO05D006506 2.3e-164 582.8 458 70.7
Migut.D00707 Erythranthe guttata HOM05D005230 ORTHO05D006506 5.2e-164 581.6 474 69.2
BraA10t44093Z Brassica rapa HOM05D005230 ORTHO05D006506 1.5e-163 580.1 466 70.6
BNapus_Darmor_BZH_scaffold_38p02380 Brassica napus HOM05D005230 ORTHO05D006506 3.3e-163 578.9 456 71.9
BolC2t06957H Brassica oleracea HOM05D005230 ORTHO05D006506 3.3e-163 578.9 456 71.9
Gohir.D09G105900 Gossypium hirsutum HOM05D005230 ORTHO05D006506 3.3e-163 578.9 459 72.3
BraA02t05508Z Brassica rapa HOM05D005230 ORTHO05D006506 9.7e-163 577.4 456 71.3
Lj2C810G6 Lonicera japonica HOM05D005230 ORTHO05D006506 1.7e-162 576.6 461 72.9
Nitab4.5_0002161g0080 Nicotiana tabacum HOM05D005230 ORTHO05D006506 1.7e-162 576.6 460 72.8
MBI13_g00890_MAGBIO Magnolia biondii HOM05D005230 ORTHO05D006506 1.1e-161 573.9 460 67.6
EL10Ac4g10073 Beta vulgaris HOM05D005230 ORTHO05D006506 3.5e-160 568.9 463 66.1
Gohir.A09G109300 Gossypium hirsutum HOM05D005230 ORTHO05D006506 3.5e-160 568.9 459 70.6
CDE08G0498 Ceratophyllum demersum HOM05D005230 ORTHO05D006506 1.0e-159 567.4 461 64.6
Thhalv10013503m.g Eutrema salsugineum HOM05D005230 ORTHO05D006506 3.6e-157 558.9 388 73.7
CARHR193430 Cardamine hirsuta HOM05D005230 ORTHO05D006506 1.4e-156 557.0 386 72.5
Sp6g24920 Schrenkiella parvula HOM05D005230 ORTHO05D006506 3.4e-155 552.4 386 72.3
AL6G30990 Arabidopsis lyrata HOM05D005230 ORTHO05D006506 1.2e-152 543.9 388 71.9
Ah.06g194900 Amaranthus hybridus HOM05D005230 ORTHO05D006506 3.5e-152 542.3 460 67.8
Os06g0338900 Oryza sativa ssp. japonica HOM05D005230 ORTHO05D006506 3.8e-151 538.9 460 66.5
Carub.0006s1783 Capsella rubella HOM05D005230 ORTHO05D006506 1.2e-149 533.9 460 66.5
HPP92_016891 Vanilla planifolia HOM05D005230 ORTHO05D006506 3.0e-148 529.3 459 66.7
GSVIVG01002283001 Vitis vinifera HOM05D005230 ORTHO05D006506 1.7e-146 523.5 379 77.8
AT5G19485 Arabidopsis thaliana HOM05D005230 ORTHO05D006506 2.2e-146 523.1 387 69.3
Nitab4.5_0002567g0160 Nicotiana tabacum HOM05D005230 ORTHO05D006506 2.9e-143 512.7 460 62.4
Sc16g0010870 Simmondsia chinensis HOM05D005230 ORTHO05D006506 8.9e-140 501.1 382 74.9
vmacro04223 Vaccinium macrocarpon HOM05D005230 ORTHO05D006506 8.3e-138 494.6 497 61.2
SEGI_36393 Sequoiadendron giganteum HOM05D005230 ORTHO05D006506 1.2e-136 490.7 460 61.5
unitig_0.g309 Utricularia gibba HOM05D005230 ORTHO05D006506 3.0e-135 486.1 458 62.2
PGR102G1412 Punica granatum HOM05D005230 ORTHO05D006506 4.3e-134 482.3 458 64.0
Zm00001eb051600 Zea mays HOM05D005230 ORTHO05D006506 1.2e-115 421.0 363 61.4
Mapoly0070s0045 Marchantia polymorpha HOM05D005230 ORTHO05D006506 8.4e-114 414.8 464 52.8
Pp3c16_600 Physcomitrium patens HOM05D005230 ORTHO05D006506 8.4e-114 414.8 464 53.7
TAR628G1140 Trochodendron aralioides HOM05D005230 ORTHO05D006506 2.9e-106 389.8 329 63.2
SMO117G0151 Selaginella moellendorffii HOM05D005230 ORTHO05D006506 8.1e-101 371.7 459 47.3
Dinv24610 Davidia involucrata HOM05D005230 ORTHO05D006506 4.6e-96 355.9 329 63.2
C09p56810 Brassica napus HOM05D005230 ORTHO05D006506 7.1e-81 305.4 290 64.8
CBR_g54067 Chara braunii HOM05D005230 ORTHO05D006506 1.3e-66 258.1 462 40.5
Mapoly0050s0011 Marchantia polymorpha HOM05D005230 ORTHO05D006506 1.4e-65 254.6 405 38.8
BolC9t58535H Brassica oleracea HOM05D005230 ORTHO05D006506 3.2e-57 226.9 189 67.2
Mapoly0050s0012 Marchantia polymorpha HOM05D005230 ORTHO05D006506 1.0e-55 221.9 242 52.1
Cre03.g207825 Chlamydomonas reinhardtii HOM05D005230 ORTHO05D006506 1.6e-51 208.0 505 35.8
Duzib150G0729 Durio zibethinus HOM05D005230 ORTHO05D006506 1.8e-47 194.5 163 65.0
MCO03G336 Micromonas commoda HOM05D005230 ORTHO05D006506 3.3e-46 190.3 415 30.8
CSS0018745 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 3.7e-45 186.8 151 66.2
Gohir.A05G264150 Gossypium hirsutum HOM05D005230 ORTHO05D006506 4.1e-44 183.3 123 71.5
PRCOL_00006600 Prasinoderma coloniale HOM05D005230 ORTHO05D006506 1.5e-41 174.9 511 33.3
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 4.7e-40 169.9 134 66.4
FvH4_4g06340 Fragaria vesca HOM05D005230 ORTHO05D006506 6.3e-37 159.5 121 71.9
Mapoly0070s0046 Marchantia polymorpha HOM05D005230 ORTHO05D006506 5.4e-36 156.4 154 54.5
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 1.0e-26 125.6 220 40.0
Psat2g003760 Pisum sativum HOM05D005230 ORTHO05D006506 3.6e-24 117.1 94 68.1
BcaC04g24210 Brassica carinata HOM05D005230 ORTHO05D006506 6.4e-21 106.3 68 82.4
Sed0001059 Sechium edule HOM05D005230 ORTHO05D006506 2.4e-20 104.4 98 79.6
VMungo1309G2461 Vigna mungo HOM05D002467 ORTHO05D013374 1.3e-18 98.6 107 57.0
Nn7g36957 Nelumbo nucifera HOM05D005230 ORTHO05D006506 8.6e-18 95.9 55 90.9
Psat2g028360 Pisum sativum HOM05D005230 ORTHO05D006506 1.1e-15 89.0 112 50.0
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 1.1e-12 79.0 75 61.3
TAR623G0477 Trochodendron aralioides HOM05D005230 ORTHO05D006506 1.5e-09 68.6 97 46.4
Dinv24611 Davidia involucrata HOM05D005230 ORTHO05D006506 1.9e-09 68.2 49 81.6
Psat0s3158g0040 Pisum sativum HOM05D005230 ORTHO05D320643 1.2e-08 65.5 60 55.0
PRCOL_00001177 Prasinoderma coloniale HOM05D004145 ORTHO05D004879 1.2e-08 65.5 393 24.7
Zm00001eb258570 Zea mays HOM05D004145 ORTHO05D004879 2.1e-08 64.7 406 22.4
THA.LOC104805832 Tarenaya hassleriana HOM05D004145 ORTHO05D004879 3.6e-08 63.9 416 22.8
Peaxi162Scf00225g00424 Petunia axillaris HOM05D004145 ORTHO05D004879 6.2e-08 63.2 408 21.1
Psat0s472g0120 Pisum sativum HOM05D005230 ORTHO05D023087 1.4e-07 62.0 62 53.2
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 1.4e-07 62.0 118 39.0
SMO356G0330 Selaginella moellendorffii HOM05D004145 ORTHO05D004879 1.8e-07 61.6 266 22.9
Nitab4.5_0010351g0020 Nicotiana tabacum HOM05D004145 ORTHO05D004879 2.3e-07 61.2 408 20.8
PSO541G4045 Papaver somniferum HOM05D004145 ORTHO05D004879 2.3e-07 61.2 403 22.6
Pp3c1_20030 Physcomitrium patens HOM05D004145 ORTHO05D004879 2.3e-07 61.2 330 23.3
Haze_14654 Corylus avellana HOM05D004145 ORTHO05D004879 4.0e-07 60.5 260 24.6
Psat1g145560 Pisum sativum HOM05D005230 ORTHO05D006506 5.2e-07 60.1 97 43.3
GSVIVG01026774001 Vitis vinifera HOM05D004145 ORTHO05D004879 5.2e-07 60.1 258 23.6
Psat4g142680 Pisum sativum HOM05D000493 ORTHO05D001638 6.8e-07 59.7 61 50.8
Psat4g142760 Pisum sativum HOM05D000493 ORTHO05D004446 8.9e-07 59.3 73 46.6
CAN.G134.208 Capsicum annuum HOM05D004145 ORTHO05D004879 1.5e-06 58.5 406 20.4
MELO3C033360.2 Cucumis melo HOM05D005230 ORTHO05D013374 1.5e-06 58.5 68 50.0
PGR004G0092 Punica granatum HOM05D004145 ORTHO05D004879 1.5e-06 58.5 415 21.7
CARHR129130 Cardamine hirsuta HOM05D004145 ORTHO05D004879 2.0e-06 58.2 246 24.4
Solyc01g098180.3 Solanum lycopersicum HOM05D004145 ORTHO05D004879 2.0e-06 58.2 249 23.3
Sopen01g041760 Solanum pennellii HOM05D004145 ORTHO05D004879 2.0e-06 58.2 249 23.3
AL4G30980 Arabidopsis lyrata HOM05D004145 ORTHO05D004879 2.6e-06 57.8 246 24.4
AT2G34970 Arabidopsis thaliana HOM05D004145 ORTHO05D004879 2.6e-06 57.8 246 24.4
AagrBONN_evm.TU.Sc2ySwM_228.295 Anthoceros agrestis HOM05D004145 ORTHO05D004879 4.4e-06 57.0 289 24.2
Cc02_g32210 Coffea canephora HOM05D004145 ORTHO05D004879 4.4e-06 57.0 351 22.2
Nitab4.5_0000245g0100 Nicotiana tabacum HOM05D004145 ORTHO05D004879 5.8e-06 56.6 248 24.2
Cre12.g502200 Chlamydomonas reinhardtii HOM05D004145 ORTHO05D004879 9.9e-06 55.8 401 22.7


User provided reference genes

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