Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0166500 Salix brachista HOM05D005285 ORTHO05D006829 1.7e-260 902.1 440 100.0
Potri.001G271100 Populus trichocarpa HOM05D005285 ORTHO05D006829 4.4e-197 691.4 440 80.5
Manes.10G147800 Manihot esculenta HOM05D005285 ORTHO05D006829 3.4e-181 638.6 440 73.4
Thecc.01G414500 Theobroma cacao HOM05D005285 ORTHO05D006829 1.1e-168 597.0 439 69.9
Dinv09380 Davidia involucrata HOM05D005285 ORTHO05D006829 3.7e-167 592.0 437 69.3
Gohir.A08G026900 Gossypium hirsutum HOM05D005285 ORTHO05D006829 8.2e-167 590.9 440 70.5
PGR044G0372 Punica granatum HOM05D005285 ORTHO05D006829 8.2e-167 590.9 440 69.8
Gorai.004G035700 Gossypium raimondii HOM05D005285 ORTHO05D006829 1.4e-166 590.1 442 70.1
Haze_03242 Corylus avellana HOM05D005285 ORTHO05D006829 5.3e-166 588.2 436 68.8
GSVIVG01032048001 Vitis vinifera HOM05D005285 ORTHO05D006829 6.9e-166 587.8 438 69.4
Cfa010729 Carpinus fangiana HOM05D005285 ORTHO05D006829 1.2e-165 587.0 436 69.0
Gohir.D08G037700 Gossypium hirsutum HOM05D005285 ORTHO05D006829 4.5e-165 585.1 442 69.7
Duzib268G1126 Durio zibethinus HOM05D005285 ORTHO05D006829 7.6e-165 584.3 440 69.1
Lj9A629T99 Lonicera japonica HOM05D005285 ORTHO05D006829 2.9e-164 582.4 438 68.7
CSS0013341 Camellia sinensis var. sinensis HOM05D005285 ORTHO05D006829 3.8e-164 582.0 441 68.7
Cpa.g.sc234.2 Carica papaya HOM05D005285 ORTHO05D006829 1.9e-163 579.7 439 67.9
TWI09G0675 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 1.9e-163 579.7 441 68.5
Eucgr.J01257 Eucalyptus grandis HOM05D005285 ORTHO05D006829 3.5e-162 575.5 441 67.6
Actinidia20684 Actinidia chinensis HOM05D005285 ORTHO05D006829 6.0e-162 574.7 438 67.1
Hma1.2p1_1011F.1_g247500 Hydrangea macrophylla HOM05D005285 ORTHO05D006829 1.0e-161 573.9 463 65.0
Peaxi162Scf00042g00510 Petunia axillaris HOM05D005285 ORTHO05D006829 1.0e-161 573.9 437 67.7
Oeu064272.1 Olea europaea HOM05D005285 ORTHO05D006829 3.9e-161 572.0 438 68.3
Ciclev10031943m.g Citrus clementina HOM05D005285 ORTHO05D006829 6.7e-161 571.2 440 66.8
TWI53G0546 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 6.7e-161 571.2 440 67.7
Cc02_g27470 Coffea canephora HOM05D005285 ORTHO05D006829 3.3e-160 568.9 438 67.1
Migut.B01343 Erythranthe guttata HOM05D005285 ORTHO05D006829 9.7e-160 567.4 439 67.7
Nitab4.5_0002012g0040 Nicotiana tabacum HOM05D005285 ORTHO05D006829 9.7e-160 567.4 435 67.6
Rhsim01G0131200 Rhododendron simsii HOM05D005285 ORTHO05D006829 9.7e-160 567.4 440 66.6
TAR636G1692 Trochodendron aralioides HOM05D005285 ORTHO05D006829 1.3e-159 567.0 436 66.5
CANSAT21G0587 Cannabis sativa HOM05D005285 ORTHO05D006829 6.3e-159 564.7 440 66.6
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 1.1e-158 563.9 446 66.6
MBI04_g14265_MAGBIO Magnolia biondii HOM05D005285 ORTHO05D006829 1.8e-158 563.1 436 66.5
Nitab4.5_0000050g0030 Nicotiana tabacum HOM05D005285 ORTHO05D006829 2.4e-158 562.8 433 67.4
Sopen10g011740 Solanum pennellii HOM05D005285 ORTHO05D006829 3.1e-158 562.4 437 67.3
PSO339G1127 Papaver somniferum HOM05D005285 ORTHO05D006829 4.1e-158 562.0 440 64.1
QL04p004838 Quercus lobata HOM05D005285 ORTHO05D006829 4.1e-158 562.0 440 66.8
Aa31LG11G7560 Aethionema arabicum HOM05D005285 ORTHO05D006829 5.3e-158 561.6 440 65.5
MSTRG.20606 Avicennia marina HOM05D005285 ORTHO05D006829 6.9e-158 561.2 436 67.7
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 6.9e-158 561.2 435 67.6
MELO3C023957.2 Cucumis melo HOM05D005285 ORTHO05D006829 1.2e-157 560.5 439 65.6
CsaV3_3G032330 Cucumis sativus L. HOM05D005285 ORTHO05D006829 1.2e-157 560.5 439 65.1
Lsat_1_v5_gn_1_109141 Lactuca sativa HOM05D005285 ORTHO05D006829 2.6e-157 559.3 438 65.3
Sed0014745 Sechium edule HOM05D005285 ORTHO05D006829 5.9e-157 558.1 439 65.6
Nn7g36086 Nelumbo nucifera HOM05D005285 ORTHO05D006829 7.7e-157 557.8 441 66.0
EL10Ac2g04308 Beta vulgaris HOM05D005285 ORTHO05D006829 1.0e-156 557.4 436 65.8
ClCG10G012540 Citrullus lanatus HOM05D005285 ORTHO05D006829 1.3e-156 557.0 439 65.6
DCAR_029637 Daucus carota HOM05D005285 ORTHO05D006829 1.7e-156 556.6 437 65.4
SGA_v2.0_scaffold646G53323 Striga asiatica HOM05D005285 ORTHO05D006829 2.2e-156 556.2 435 66.9
Aqoxy2G00109 Aquilegia oxysepala HOM05D005285 ORTHO05D006829 2.9e-156 555.8 436 64.4
MD07G1005600 Malus domestica HOM05D005285 ORTHO05D006829 3.8e-156 555.4 436 66.3
PSO384G1382 Papaver somniferum HOM05D005285 ORTHO05D006829 6.5e-156 554.7 440 63.4
SalBow5G3096 Salvia bowleyana HOM05D005285 ORTHO05D006829 6.5e-156 554.7 439 66.3
FAN03G1002 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.1e-155 553.9 438 65.3
SalBow5G3836 Salvia bowleyana HOM05D005285 ORTHO05D006829 1.1e-155 553.9 439 66.1
Eucgr.J01254 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.4e-155 553.5 441 64.6
Eucgr.J01253 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.9e-155 553.1 441 64.4
Eucgr.J01256 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.9e-155 553.1 441 64.4
Thhalv10004473m.g Eutrema salsugineum HOM05D005285 ORTHO05D006829 1.9e-155 553.1 440 63.9
FvH4_7g00610 Fragaria vesca HOM05D005285 ORTHO05D006829 5.5e-155 551.6 438 65.3
THA.LOC104819060 Tarenaya hassleriana HOM05D005285 ORTHO05D006829 5.5e-155 551.6 440 64.3
ECA248G0026 Erigeron canadensis HOM05D005285 ORTHO05D006829 7.2e-155 551.2 438 63.9
FAN10G3755 Fragaria x ananassa HOM05D005285 ORTHO05D006829 9.4e-155 550.8 438 65.3
FAN01G1197 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.2e-154 550.4 438 65.1
Phvul.011G213800 Phaseolus vulgaris HOM05D005285 ORTHO05D006829 1.2e-154 550.4 436 64.9
FAN06G0391 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.6e-154 550.1 438 65.1
MD02G1316300 Malus domestica HOM05D005285 ORTHO05D006829 1.6e-154 550.1 436 66.7
Lalb_Chr03g0033921 Lupinus albus HOM05D005285 ORTHO05D006829 4.6e-154 548.5 436 64.9
Sp2g18470 Schrenkiella parvula HOM05D005285 ORTHO05D006829 4.6e-154 548.5 440 64.5
Glyma.12G239400 Glycine max HOM05D005285 ORTHO05D006829 7.9e-154 547.7 436 64.9
VMungo1127G2059 Vigna mungo HOM05D005285 ORTHO05D006829 7.9e-154 547.7 436 65.1
BcaC06g30830 Brassica carinata HOM05D005285 ORTHO05D006829 1.0e-153 547.4 440 64.3
RcHm_v2.0_Chr1g0314801 Rosa chinensis HOM05D005285 ORTHO05D006829 1.0e-153 547.4 438 65.3
A06p39410 Brassica napus HOM05D005285 ORTHO05D006829 1.8e-153 546.6 440 64.3
BraA06t26856Z Brassica rapa HOM05D005285 ORTHO05D006829 1.8e-153 546.6 440 64.3
AL8G20280 Arabidopsis lyrata HOM05D005285 ORTHO05D006829 2.3e-153 546.2 440 63.9
AUR62023050 Chenopodium quinoa HOM05D005285 ORTHO05D006829 8.8e-153 544.3 438 65.1
arahy.Tifrunner.gnm1.ann1.DICK3U Arachis hypogaea HOM05D005285 ORTHO05D006829 7.4e-152 541.2 436 64.0
AT5G48020 Arabidopsis thaliana HOM05D005285 ORTHO05D006829 9.7e-152 540.8 440 62.7
Carub.0008s0757 Capsella rubella HOM05D005285 ORTHO05D006829 2.2e-151 539.7 441 63.7
BolC7t44405H Brassica oleracea HOM05D005285 ORTHO05D006829 2.8e-151 539.3 440 63.6
CARHR184290 Cardamine hirsuta HOM05D005285 ORTHO05D006829 8.2e-151 537.7 441 62.8
C07p38860 Brassica napus HOM05D005285 ORTHO05D006829 1.1e-150 537.3 440 63.6
SHI04065 Sapria himalayana HOM05D000259 ORTHO05D000155 1.4e-150 537.0 527 56.0
Psat4g195080 Pisum sativum HOM05D005285 ORTHO05D006829 1.8e-150 536.6 434 63.8
Hund03676 Selenicereus undatus HOM05D005285 ORTHO05D006829 3.1e-150 535.8 433 64.4
unitig_26.g9596 Utricularia gibba HOM05D005285 ORTHO05D006829 6.9e-150 534.6 440 63.2
Lj3g0011351 Lotus japonicus HOM05D005285 ORTHO05D006829 3.4e-149 532.3 436 63.3
Hund03675 Selenicereus undatus HOM05D005285 ORTHO05D006829 7.7e-149 531.2 466 60.5
Medtr8g036165 Medicago truncatula HOM05D005285 ORTHO05D006829 9.4e-147 524.2 436 62.8
Ca_23856_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 6.1e-146 521.5 436 61.9
vmacro21170 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 7.9e-146 521.2 490 59.0
ATR0605G013 Amborella trichopoda HOM05D005285 ORTHO05D006829 1.0e-145 520.8 441 61.2
CDE04G1667 Ceratophyllum demersum HOM05D005285 ORTHO05D006829 2.3e-145 519.6 440 60.7
Os02g0717500 Oryza sativa ssp. japonica HOM05D005285 ORTHO05D006829 3.9e-145 518.8 441 60.3
Zm00001eb189240 Zea mays HOM05D005285 ORTHO05D006829 3.9e-145 518.8 434 60.6
SGA_v2.0_scaffold646G53324 Striga asiatica HOM05D005285 ORTHO05D006829 4.4e-144 515.4 533 53.5
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.3e-143 513.8 530 54.0
Lj9C629T1 Lonicera japonica HOM05D005285 ORTHO05D006829 3.7e-143 512.3 431 61.7
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 1.9e-139 500.0 410 64.1
Atru.chr11.2010 Acer truncatum HOM05D005285 ORTHO05D006829 5.2e-137 491.9 430 59.8
QL04p004878 Quercus lobata HOM05D005285 ORTHO05D006829 6.7e-137 491.5 434 58.3
Atru.chr11.2632 Acer truncatum HOM05D005285 ORTHO05D006829 2.6e-136 489.6 462 59.7
ECA248G2079 Erigeron canadensis HOM05D005285 ORTHO05D006829 2.6e-136 489.6 434 58.5
HanXRQChr11g0330581 Helianthus annuus HOM05D005285 ORTHO05D006829 2.6e-136 489.6 440 57.3
QL04p004868 Quercus lobata HOM05D005285 ORTHO05D006829 5.7e-136 488.4 434 57.6
SEGI_06931 Sequoiadendron giganteum HOM05D005285 ORTHO05D006829 1.3e-135 487.3 446 56.7
ECA248G2524 Erigeron canadensis HOM05D005285 ORTHO05D006829 6.3e-135 485.0 435 57.0
Lsat_1_v5_gn_1_111020 Lactuca sativa HOM05D005285 ORTHO05D006829 1.8e-134 483.4 437 57.2
QL04p004849 Quercus lobata HOM05D005285 ORTHO05D006829 1.6e-133 480.3 436 55.5
AagrBONN_evm.TU.Sc2ySwM_228.3236 Anthoceros agrestis HOM05D005285 ORTHO05D006829 1.9e-131 473.4 437 54.9
Prupe.2G008000 Prunus persica HOM05D005285 ORTHO05D006829 1.2e-130 470.7 317 74.8
HanXRQChr11g0330561 Helianthus annuus HOM05D005285 ORTHO05D006829 2.0e-128 463.4 439 54.7
Mapoly0019s0106 Marchantia polymorpha HOM05D005285 ORTHO05D006829 3.8e-124 449.1 439 52.2
SMO364G0792 Selaginella moellendorffii HOM05D005285 ORTHO05D006829 3.2e-123 446.0 433 52.4
Prupe.2G008200 Prunus persica HOM05D005285 ORTHO05D006829 8.3e-119 431.4 299 72.2
Sc11g0009350 Simmondsia chinensis HOM05D005285 ORTHO05D006829 8.3e-119 431.4 300 71.7
Pp3c17_23530 Physcomitrium patens HOM05D005285 ORTHO05D006829 1.1e-110 404.4 456 47.4
Sed0008744 Sechium edule HOM05D005285 ORTHO05D006829 3.9e-108 396.0 421 53.9
HPP92_022786 Vanilla planifolia HOM05D005285 ORTHO05D006829 2.1e-106 390.2 307 63.8
Lsat_1_v5_gn_1_72821 Lactuca sativa HOM05D005285 ORTHO05D006829 8.3e-95 351.7 421 47.0
Pp3c14_26250 Physcomitrium patens HOM05D005285 ORTHO05D006829 1.0e-92 344.7 329 54.1
Ca_24082_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 5.1e-92 342.4 426 43.9
Cre13.g586400 Chlamydomonas reinhardtii HOM05D005285 ORTHO05D006829 1.5e-91 340.9 453 41.5
Solyc10g037950.2 Solanum lycopersicum HOM05D005285 ORTHO05D006829 5.8e-80 302.4 233 67.4
arahy.Tifrunner.gnm1.ann1.A7HRCY Arachis hypogaea HOM05D005285 ORTHO05D006829 3.2e-78 296.6 315 52.7
HanXRQChr11g0330591 Helianthus annuus HOM05D005285 ORTHO05D006829 9.3e-78 295.0 257 59.1
TPR.G21737 Trifolium pratense HOM05D005285 ORTHO05D006829 4.0e-73 279.6 208 67.8
Eucgr.L03705 Eucalyptus grandis HOM05D005285 ORTHO05D006829 7.6e-72 275.4 226 63.7
Solyc10g037960.3 Solanum lycopersicum HOM05D005285 ORTHO05D006829 3.8e-71 273.1 206 68.0
HanXRQChr01g0017351 Helianthus annuus HOM05D005285 ORTHO05D006829 8.7e-68 261.9 223 58.3
TPR.G21746 Trifolium pratense HOM05D005285 ORTHO05D006829 3.5e-61 240.0 216 56.9
Cpa.g.sc2760.1 Carica papaya HOM05D005285 ORTHO05D006829 4.9e-55 219.5 208 53.4
Ca_24079_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 7.1e-54 215.7 429 34.5
Rhsim06G0016300 Rhododendron simsii HOM05D005285 ORTHO05D006829 1.5e-51 208.0 115 87.0
Peaxi162Scf00451g00621 Petunia axillaris HOM05D005285 ORTHO05D006829 2.7e-45 187.2 214 50.0
HanXRQChr11g0330601 Helianthus annuus HOM05D005285 ORTHO05D006829 4.8e-42 176.4 106 76.4
Actinidia21565 Actinidia chinensis HOM05D005285 ORTHO05D006829 1.8e-33 147.9 151 56.3
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 3.4e-32 143.7 134 59.0
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 7.0e-25 119.4 186 41.9
Oeu039101.1 Olea europaea HOM05D000288 ORTHO05D000173 3.2e-22 110.5 94 61.7
TPR.G13313 Trifolium pratense HOM05D005285 ORTHO05D413460 6.7e-20 102.8 77 61.0
CDE07G0090 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 1.7e-18 98.2 223 31.4
vmacro21176 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 8.2e-18 95.9 112 51.8
arahy.Tifrunner.gnm1.ann1.J91U4H Arachis hypogaea HOM05D000001 ORTHO05D004533 3.1e-17 94.0 62 67.7
VMungo1127G1344 Vigna mungo HOM05D000839 ORTHO05D000664 1.2e-16 92.0 48 87.5
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 6.5e-15 86.3 55 70.9
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 5.5e-14 83.2 78 56.4
arahy.Tifrunner.gnm1.ann1.43BKZS Arachis hypogaea HOM05D000001 ORTHO05D000003 1.6e-13 81.6 47 74.5
arahy.Tifrunner.gnm1.ann1.81AB3J Arachis hypogaea HOM05D000001 ORTHO05D084391 1.1e-06 58.9 62 46.8
Lsat_1_v5_gn_9_64201 Lactuca sativa HOM05D000310 ORTHO05D005377 4.2e-06 57.0 32 78.1
Prupe.8G011200 Prunus persica HOM05D000018 ORTHO05D010764 7.2e-06 56.2 161 24.8
Nitab4.5_0000522g0150 Nicotiana tabacum HOM05D000206 ORTHO05D000232 9.4e-06 55.8 163 21.5
Oeu000043.1 Olea europaea HOM05D000206 ORTHO05D000232 9.4e-06 55.8 137 27.7


User provided reference genes

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