Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0162600 Salix brachista HOM05D004631 ORTHO05D005223 2.0e-138 495.7 252 100.0
Potri.001G264500 Populus trichocarpa HOM05D004631 ORTHO05D005223 6.9e-110 401.0 252 84.1
Sabra09G0043700 Salix brachista HOM05D004631 ORTHO05D005223 6.2e-103 377.9 252 78.6
Potri.009G059300 Populus trichocarpa HOM05D004631 ORTHO05D005223 5.4e-99 364.8 252 76.6
Manes.07G089400 Manihot esculenta HOM05D004631 ORTHO05D005223 4.8e-87 325.1 232 71.6
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 1.1e-86 323.9 232 71.6
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 6.9e-86 321.2 253 66.0
TWI59G0755 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 6.9e-86 321.2 252 65.1
Duzib264G0826 Durio zibethinus HOM05D004631 ORTHO05D005223 2.7e-82 309.3 253 63.6
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 4.6e-82 308.5 285 59.6
Haze_14815 Corylus avellana HOM05D004631 ORTHO05D005223 4.6e-82 308.5 273 60.4
Cfa007277 Carpinus fangiana HOM05D004631 ORTHO05D005223 1.0e-81 307.4 255 62.0
Prupe.3G299600 Prunus persica HOM05D004631 ORTHO05D005223 3.0e-81 305.8 252 62.7
FAN02G2863 Fragaria x ananassa HOM05D004631 ORTHO05D005223 2.5e-80 302.8 253 64.0
CiPaw.03G050500 Carya illinoinensis HOM05D004631 ORTHO05D005223 3.3e-80 302.4 256 63.7
Lj7A605T75 Lonicera japonica HOM05D004631 ORTHO05D005223 5.7e-80 301.6 242 63.2
QL02p072911 Quercus lobata HOM05D004631 ORTHO05D005223 5.7e-80 301.6 256 61.7
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 9.7e-80 300.8 253 63.6
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 2.2e-79 299.7 255 65.1
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 3.7e-79 298.9 252 62.7
Gohir.D10G085100 Gossypium hirsutum HOM05D004631 ORTHO05D005223 1.8e-78 296.6 255 61.6
Rhsim08G0046200 Rhododendron simsii HOM05D004631 ORTHO05D005223 2.4e-78 296.2 248 62.5
Gorai.011G093000 Gossypium raimondii HOM05D004631 ORTHO05D005223 3.4e-77 292.4 256 61.3
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 5.9e-77 291.6 252 60.7
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 1.0e-76 290.8 253 60.5
COL.COLO4_29276 Corchorus olitorius HOM05D004631 ORTHO05D005223 1.7e-76 290.0 225 63.6
Gorai.012G089800 Gossypium raimondii HOM05D004631 ORTHO05D005223 1.7e-76 290.0 257 60.3
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 1.7e-76 290.0 254 60.6
GSVIVG01001850001 Vitis vinifera HOM05D004631 ORTHO05D005223 1.7e-76 290.0 232 64.2
PGR142G2057 Punica granatum HOM05D004631 ORTHO05D005223 2.2e-76 289.7 255 62.4
CiPaw.04G033100 Carya illinoinensis HOM05D004631 ORTHO05D005223 3.8e-76 288.9 256 61.3
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 3.8e-76 288.9 253 62.5
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 3.8e-76 288.9 255 62.0
Gohir.D04G079800 Gossypium hirsutum HOM05D004631 ORTHO05D005223 5.0e-76 288.5 256 60.2
FAN05G1873 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.9e-75 286.6 254 62.6
Hma1.2p1_0227F.1_g095910 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 1.9e-75 286.6 245 62.4
Gohir.A10G160500 Gossypium hirsutum HOM05D004631 ORTHO05D005223 2.5e-75 286.2 257 60.3
Nn4g22438 Nelumbo nucifera HOM05D004631 ORTHO05D005223 7.2e-75 284.6 257 59.5
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 7.2e-75 284.6 252 61.1
TWI23G0469 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 7.2e-75 284.6 252 59.9
FAN14G1903 Fragaria x ananassa HOM05D004631 ORTHO05D005223 2.7e-74 282.7 254 61.8
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 6.1e-74 281.6 254 60.6
AT3G27310 Arabidopsis thaliana HOM05D004631 ORTHO05D005223 1.8e-73 280.0 255 60.0
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 1.8e-73 280.0 252 60.3
Thhalv10004822m.g Eutrema salsugineum HOM05D004631 ORTHO05D005223 1.8e-73 280.0 254 59.1
Sopen02g038460 Solanum pennellii HOM05D004631 ORTHO05D005223 1.8e-73 280.0 244 61.9
Hma1.2p1_0279F.1_g112270 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 2.3e-73 279.6 242 60.3
FAN09G3073 Fragaria x ananassa HOM05D004631 ORTHO05D005223 3.0e-73 279.3 254 61.0
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 3.0e-73 279.3 244 61.9
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 3.9e-73 278.9 246 59.8
CSS0019474 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 8.8e-73 277.7 241 58.9
SGA_v2.0_scaffold18G08240 Striga asiatica HOM05D004631 ORTHO05D005223 8.8e-73 277.7 245 61.6
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 1.1e-72 277.3 240 60.8
Cc07_g00410 Coffea canephora HOM05D004631 ORTHO05D005223 1.1e-72 277.3 242 62.4
AUR62032242 Chenopodium quinoa HOM05D004631 ORTHO05D005223 1.5e-72 276.9 250 61.2
vmacro05924 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 1.5e-72 276.9 252 58.7
TAR371G0552 Trochodendron aralioides HOM05D004631 ORTHO05D005223 2.0e-72 276.6 252 57.9
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 3.3e-72 275.8 243 59.7
Carub.0005s0558 Capsella rubella HOM05D004631 ORTHO05D005223 3.3e-72 275.8 256 60.5
CAN.G473.59 Capsicum annuum HOM05D004631 ORTHO05D005223 4.3e-72 275.4 245 60.4
vmacro18314 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 5.7e-72 275.0 225 62.7
PSO063G4908 Papaver somniferum HOM05D004631 ORTHO05D005223 7.4e-72 274.6 243 58.4
Glyma.16G063100 Glycine max HOM05D004631 ORTHO05D005223 9.7e-72 274.2 263 58.9
AUR62011927 Chenopodium quinoa HOM05D004631 ORTHO05D005223 1.7e-71 273.5 250 61.2
Cpa.g.c34704 Carica papaya HOM05D004631 ORTHO05D005223 2.2e-71 273.1 225 63.1
PSO782G2324 Papaver somniferum HOM05D004631 ORTHO05D005223 2.2e-71 273.1 243 58.0
Gohir.A05G341700 Gossypium hirsutum HOM05D004631 ORTHO05D005223 2.8e-71 272.7 235 60.9
DCAR_021756 Daucus carota HOM05D004631 ORTHO05D005223 3.7e-71 272.3 237 62.0
Sed0025843 Sechium edule HOM05D004631 ORTHO05D005223 6.3e-71 271.6 256 57.4
Aa31LG2G5340 Aethionema arabicum HOM05D004631 ORTHO05D005223 1.4e-70 270.4 269 56.1
ClCG11G006850 Citrullus lanatus HOM05D004631 ORTHO05D005223 4.1e-70 268.9 281 53.7
Glyma.19G082400 Glycine max HOM05D004631 ORTHO05D005223 5.3e-70 268.5 262 59.2
CARHR148590 Cardamine hirsuta HOM05D004631 ORTHO05D005223 9.1e-70 267.7 254 57.5
AL5G16540 Arabidopsis lyrata HOM05D004631 ORTHO05D005223 2.0e-69 266.5 234 60.7
TAR629G3282 Trochodendron aralioides HOM05D004631 ORTHO05D005223 2.0e-69 266.5 252 56.7
Lsat_1_v5_gn_0_32720 Lactuca sativa HOM05D004631 ORTHO05D005223 5.9e-69 265.0 243 58.4
HanXRQChr17g0549531 Helianthus annuus HOM05D004631 ORTHO05D005223 1.0e-68 264.2 234 59.0
EL10Ac5g10455 Beta vulgaris HOM05D004631 ORTHO05D005223 1.7e-68 263.5 250 57.6
CsaV3_6G001200 Cucumis sativus L. HOM05D004631 ORTHO05D005223 2.9e-68 262.7 235 58.3
BcaC06g31006 Brassica carinata HOM05D004631 ORTHO05D005223 8.5e-68 261.2 256 57.0
Actinidia05943 Actinidia chinensis HOM05D000918 ORTHO05D000791 1.9e-67 260.0 223 60.1
arahy.Tifrunner.gnm1.ann1.5W0L45 Arachis hypogaea HOM05D004631 ORTHO05D005223 2.5e-67 259.6 257 58.8
arahy.Tifrunner.gnm1.ann1.NS464T Arachis hypogaea HOM05D004631 ORTHO05D005223 5.5e-67 258.5 257 58.8
Sp2g16470 Schrenkiella parvula HOM05D004631 ORTHO05D005223 9.4e-67 257.7 254 56.3
DCAR_011290 Daucus carota HOM05D004631 ORTHO05D005223 2.1e-66 256.5 235 60.9
BcaC06g33833 Brassica carinata HOM05D004631 ORTHO05D005223 3.6e-66 255.8 261 54.4
BolC7t44152H Brassica oleracea HOM05D004631 ORTHO05D005223 3.6e-66 255.8 261 54.4
Lsat_1_v5_gn_4_185741 Lactuca sativa HOM05D004631 ORTHO05D005223 3.6e-66 255.8 244 61.1
MBI05_g32279_MAGBIO Magnolia biondii HOM05D004631 ORTHO05D005223 1.0e-65 254.2 229 58.1
A06p41300 Brassica napus HOM05D004631 ORTHO05D005223 2.3e-65 253.1 259 54.1
BraA06t27055Z Brassica rapa HOM05D004631 ORTHO05D005223 2.3e-65 253.1 259 54.1
Ca_04405_v3 Cicer arietinum L. HOM05D004631 ORTHO05D005223 3.0e-65 252.7 221 61.5
Sed0000329 Sechium edule HOM05D004631 ORTHO05D005223 3.0e-65 252.7 256 55.5
Dinv25693 Davidia involucrata HOM05D004631 ORTHO05D005223 3.9e-65 252.3 205 63.9
C07p36360 Brassica napus HOM05D004631 ORTHO05D005223 5.1e-65 251.9 258 54.3
Sc03g0007030 Simmondsia chinensis HOM05D004631 ORTHO05D005223 6.7e-65 251.5 192 66.1
HanXRQChr15g0487081 Helianthus annuus HOM05D004631 ORTHO05D005223 2.6e-64 249.6 246 56.9
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 5.7e-64 248.4 229 56.3
Lalb_Chr14g0363051 Lupinus albus HOM05D004631 ORTHO05D005223 5.7e-64 248.4 245 54.3
Oeu050430.2 Olea europaea HOM05D004631 ORTHO05D005223 2.2e-63 246.5 275 51.6
MSTRG.3110 Avicennia marina HOM05D004631 ORTHO05D005223 3.7e-63 245.7 242 57.0
SalBow1G3920 Salvia bowleyana HOM05D004631 ORTHO05D005223 6.3e-63 245.0 274 50.7
VMungo1383G3654 Vigna mungo HOM05D004631 ORTHO05D005223 6.3e-63 245.0 240 56.7
Peaxi162Scf00420g00345 Petunia axillaris HOM05D004631 ORTHO05D005223 1.8e-62 243.4 242 54.5
Peaxi162Scf00420g00342 Petunia axillaris HOM05D004631 ORTHO05D005223 2.4e-62 243.0 242 54.5
SalBow1G0328 Salvia bowleyana HOM05D004631 ORTHO05D005223 4.1e-62 242.3 274 50.4
ECA232G0338 Erigeron canadensis HOM05D004631 ORTHO05D005223 5.3e-62 241.9 254 54.3
Lj2g0014181 Lotus japonicus HOM05D004631 ORTHO05D005223 1.3e-60 237.3 224 58.5
unitig_62.g23368 Utricularia gibba HOM05D004631 ORTHO05D005223 1.3e-60 237.3 224 56.2
TPR.G29003 Trifolium pratense HOM05D004631 ORTHO05D005223 2.9e-60 236.1 253 53.0
Psat1g084240 Pisum sativum HOM05D004631 ORTHO05D005223 3.8e-60 235.7 257 54.1
ECA246G0472 Erigeron canadensis HOM05D004631 ORTHO05D005223 6.5e-60 235.0 242 55.4
Dinv33383 Davidia involucrata HOM05D004631 ORTHO05D005223 2.5e-59 233.0 162 70.4
Phvul.008G148800 Phaseolus vulgaris HOM05D004631 ORTHO05D005223 2.3e-57 226.5 236 55.9
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 8.8e-57 224.6 187 61.5
HPP92_028037 Vanilla planifolia HOM05D004631 ORTHO05D005223 2.0e-56 223.4 235 51.1
ATR0824G076 Amborella trichopoda HOM05D004631 ORTHO05D005223 3.3e-56 222.6 231 51.5
Lj1g0026695 Lotus japonicus HOM05D004631 ORTHO05D005223 4.1e-54 215.7 264 48.5
Nitab4.5_0001863g0070 Nicotiana tabacum HOM05D004631 ORTHO05D005223 1.2e-53 214.2 227 55.5
Oeu058758.2 Olea europaea HOM05D004631 ORTHO05D005223 5.9e-53 211.8 167 63.5
MELO3C008218.2 Cucumis melo HOM05D004631 ORTHO05D005223 3.0e-49 199.5 190 56.8
Medtr6g023080 Medicago truncatula HOM05D004631 ORTHO05D005223 2.8e-47 193.0 198 54.0
Ciclev10003548m.g Citrus clementina HOM05D004631 ORTHO05D005223 1.3e-44 184.1 250 50.0
Os04g0485200 Oryza sativa ssp. japonica HOM05D004631 ORTHO05D005223 3.8e-44 182.6 230 45.2
Zm00001eb425170 Zea mays HOM05D004631 ORTHO05D005223 6.5e-44 181.8 235 45.1
Medtr6g022770 Medicago truncatula HOM05D004631 ORTHO05D005223 3.2e-43 179.5 140 62.9
Zm00001eb079230 Zea mays HOM05D004631 ORTHO05D005223 8.0e-42 174.9 238 43.7
TPR.G2332 Trifolium pratense HOM05D004631 ORTHO05D005223 4.0e-41 172.6 200 50.0
Prupe.8G176800 Prunus persica HOM05D004631 ORTHO05D005223 2.2e-39 166.8 121 66.1
Potri.001G337533 Populus trichocarpa HOM05D004631 ORTHO05D005223 2.0e-37 160.2 213 47.4
Medtr0531s0010 Medicago truncatula HOM05D004631 ORTHO05D005223 1.3e-36 157.5 170 53.5
MD10G1138200 Malus domestica HOM05D004631 ORTHO05D005223 8.6e-36 154.8 126 57.9
Mapoly0078s0021 Marchantia polymorpha HOM05D004631 ORTHO05D005223 8.6e-36 154.8 240 40.0
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 1.4e-33 147.5 127 64.6
Nitab4.5_0008718g0050 Nicotiana tabacum HOM05D004631 ORTHO05D005223 9.8e-32 141.4 199 45.2
SMO199G0125 Selaginella moellendorffii HOM05D004631 ORTHO05D005223 1.7e-31 140.6 241 38.6
Pp3c7_140 Physcomitrium patens HOM05D004631 ORTHO05D005223 8.3e-31 138.3 230 39.6
FAN27G0193 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.7e-28 130.6 136 53.7
FvH4_2g09210 Fragaria vesca HOM05D004631 ORTHO05D005223 9.5e-27 124.8 136 52.9
FAN24G1590 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.6e-26 124.0 179 46.9
Eucgr.L03061 Eucalyptus grandis HOM05D004631 ORTHO05D005223 2.1e-26 123.6 82 69.5
A09p03370 Brassica napus HOM05D004631 ORTHO05D005223 1.0e-25 121.3 127 53.5
BraA09t35975Z Brassica rapa HOM05D004631 ORTHO05D005223 1.0e-25 121.3 127 53.5
BraA09t35976Z Brassica rapa HOM05D004631 ORTHO05D005223 1.0e-25 121.3 127 53.5
BcaC04g23906 Brassica carinata HOM05D004631 ORTHO05D005223 2.6e-24 116.7 168 45.8
Medtr4g103350 Medicago truncatula HOM05D004631 ORTHO05D005223 2.6e-24 116.7 150 46.7
HPP92_027613 Vanilla planifolia HOM05D004631 ORTHO05D005223 6.4e-23 112.1 115 48.7
BcaB04g19435 Brassica carinata HOM05D002252 ORTHO05D002451 4.0e-17 92.8 102 49.0
RcHm_v2.0_Chr6g0265061 Rosa chinensis HOM05D004631 ORTHO05D005223 3.4e-16 89.7 153 43.8
SMO361G0265 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 2.3e-12 77.0 257 29.6
Zm00001eb055680 Zea mays HOM05D004631 ORTHO05D005223 2.5e-11 73.6 103 43.7
SMO361G0508 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 1.6e-10 70.9 196 32.1
Sabra16G0218300 Salix brachista HOM05D004631 ORTHO05D005223 2.8e-10 70.1 50 62.0
HPP92_027614 Vanilla planifolia HOM05D004631 ORTHO05D005223 1.2e-08 64.7 77 48.1
Actinidia36166 Actinidia chinensis HOM05D004631 ORTHO05D005223 1.5e-08 64.3 61 59.0
C09p03590 Brassica napus HOM05D004631 ORTHO05D005223 7.1e-06 55.5 30 83.3


User provided reference genes

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