Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0161800 Salix brachista HOM05D003654 ORTHO05D004176 4.3e-33 144.1 71 100.0
Potri.001G263404 Populus trichocarpa HOM05D003654 ORTHO05D004176 2.1e-19 98.6 74 68.9
Gohir.D08G164000 Gossypium hirsutum HOM05D003654 ORTHO05D004176 5.8e-14 80.5 83 49.4
Gohir.A09G122400 Gossypium hirsutum HOM05D003654 ORTHO05D004176 2.2e-13 78.6 39 79.5
Gohir.D09G118500 Gossypium hirsutum HOM05D003654 ORTHO05D004176 2.2e-13 78.6 39 79.5
Gorai.004G171000 Gossypium raimondii HOM05D003654 ORTHO05D004176 4.9e-13 77.4 39 79.5
TAR633G1637 Trochodendron aralioides HOM05D003654 ORTHO05D004176 6.4e-13 77.0 39 79.5
Gorai.006G136800 Gossypium raimondii HOM05D003654 ORTHO05D004176 1.9e-12 75.5 39 76.9
Thecc.05G154000 Theobroma cacao HOM05D003654 ORTHO05D004176 1.9e-12 75.5 39 76.9
Ah.10g038700 Amaranthus hybridus HOM05D003654 ORTHO05D004176 2.4e-12 75.1 73 50.7
Thhalv10006420m.g Eutrema salsugineum HOM05D003654 ORTHO05D004176 2.4e-12 75.1 39 76.9
BcaC02g09939 Brassica carinata HOM05D003654 ORTHO05D004176 5.4e-12 73.9 36 80.6
C04p34970 Brassica napus HOM05D003654 ORTHO05D004176 5.4e-12 73.9 36 80.6
BolC4t25052H Brassica oleracea HOM05D003654 ORTHO05D004176 5.4e-12 73.9 36 80.6
Ciclev10006321m.g Citrus clementina HOM05D003654 ORTHO05D004176 5.4e-12 73.9 35 82.9
Lsat_1_v5_gn_9_28881 Lactuca sativa HOM05D003654 ORTHO05D004176 5.4e-12 73.9 49 63.3
Manes.10G139300 Manihot esculenta HOM05D003654 ORTHO05D004176 5.4e-12 73.9 37 78.4
Sc10g0000210 Simmondsia chinensis HOM05D003654 ORTHO05D004176 5.4e-12 73.9 39 74.4
Solyc04g015700.1 Solanum lycopersicum HOM05D003654 ORTHO05D004176 7.1e-12 73.6 35 82.9
Sopen04g007780 Solanum pennellii HOM05D003654 ORTHO05D004176 7.1e-12 73.6 35 82.9
Ciclev10033218m.g Citrus clementina HOM05D003654 ORTHO05D004176 9.2e-12 73.2 37 81.1
Lsat_1_v5_gn_9_28901 Lactuca sativa HOM05D003654 ORTHO05D004176 9.2e-12 73.2 49 59.2
ClCG09G003960 Citrullus lanatus HOM05D003654 ORTHO05D004176 1.2e-11 72.8 37 78.4
Gohir.D09G118550 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.2e-11 72.8 37 78.4
Gorai.006G136900 Gossypium raimondii HOM05D003654 ORTHO05D004176 1.2e-11 72.8 37 78.4
Carub.0005s2429 Capsella rubella HOM05D003654 ORTHO05D004176 2.1e-11 72.0 35 80.0
Lsat_1_v5_gn_9_28921 Lactuca sativa HOM05D003654 ORTHO05D004176 2.1e-11 72.0 36 77.8
Lsat_1_v5_gn_9_28941 Lactuca sativa HOM05D003654 ORTHO05D004176 2.1e-11 72.0 36 77.8
CARHR167650 Cardamine hirsuta HOM05D003654 ORTHO05D004176 2.7e-11 71.6 39 71.8
Cc06_g17070 Coffea canephora HOM05D003654 ORTHO05D004176 2.7e-11 71.6 37 75.7
Migut.B01278 Erythranthe guttata HOM05D003654 ORTHO05D004176 2.7e-11 71.6 73 45.2
Hma1.2p1_2266F.1_g318430 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 2.7e-11 71.6 36 77.8
Hma1.2p1_2266F.1_g318440 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 2.7e-11 71.6 36 77.8
Hma1.2p1_2266F.1_g318450 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 2.7e-11 71.6 36 77.8
Lj9P638T60 Lonicera japonica HOM05D003654 ORTHO05D004176 2.7e-11 71.6 33 87.9
Atru.chr1.1088 Acer truncatum HOM05D003654 ORTHO05D004176 3.5e-11 71.2 35 80.0
Rhsim07G0057900 Rhododendron simsii HOM05D003654 ORTHO05D004176 3.5e-11 71.2 36 80.6
EL10Ac2g04348 Beta vulgaris HOM05D003654 ORTHO05D004176 6.0e-11 70.5 32 87.5
Haze_19862 Corylus avellana HOM05D003654 ORTHO05D004176 6.0e-11 70.5 47 66.0
THA.LOC109117091 Tarenaya hassleriana HOM05D003654 ORTHO05D004176 6.0e-11 70.5 47 61.7
AUR62023084 Chenopodium quinoa HOM05D003654 ORTHO05D004176 7.8e-11 70.1 35 80.0
HanXRQChr03g0062221 Helianthus annuus HOM05D003654 ORTHO05D004176 7.8e-11 70.1 35 77.1
PGSC0003DMG400027273 Solanum tuberosum HOM05D003654 ORTHO05D004176 7.8e-11 70.1 35 77.1
Actinidia19408 Actinidia chinensis HOM05D003654 ORTHO05D004176 1.0e-10 69.7 40 75.0
CsaV3_7G030860 Cucumis sativus L. HOM05D003654 ORTHO05D004176 1.0e-10 69.7 37 78.4
Nn2g15256 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.0e-10 69.7 37 75.7
MELO3C009681.2 Cucumis melo HOM05D003654 ORTHO05D004176 1.3e-10 69.3 37 70.3
CsaV3_3G039380 Cucumis sativus L. HOM05D003654 ORTHO05D004176 1.3e-10 69.3 37 70.3
Nitab4.5_0006340g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 1.3e-10 69.3 35 77.1
Peaxi162Scf00071g01140 Petunia axillaris HOM05D003654 ORTHO05D004176 1.3e-10 69.3 38 73.7
Zm00001eb301890 Zea mays HOM05D003654 ORTHO05D004176 1.3e-10 69.3 33 81.8
BcaC07g40377 Brassica carinata HOM05D003654 ORTHO05D004176 1.7e-10 68.9 39 69.2
BcaC07g40378 Brassica carinata HOM05D003654 ORTHO05D004176 1.7e-10 68.9 39 69.2
BcaC07g40382 Brassica carinata HOM05D003654 ORTHO05D004176 1.7e-10 68.9 39 69.2
C08p32930 Brassica napus HOM05D003654 ORTHO05D004176 1.7e-10 68.9 39 69.2
BolC8t50897H Brassica oleracea HOM05D003654 ORTHO05D004176 1.7e-10 68.9 39 69.2
BraA07t30006Z Brassica rapa HOM05D003654 ORTHO05D004176 1.7e-10 68.9 32 84.4
BraA09t40486Z Brassica rapa HOM05D003654 ORTHO05D004176 1.7e-10 68.9 39 69.2
DCAR_020491 Daucus carota HOM05D003654 ORTHO05D004176 1.7e-10 68.9 36 72.2
Gohir.A08G143100 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.7e-10 68.9 32 84.4
Oeu014591.1 Olea europaea HOM05D003654 ORTHO05D004176 1.7e-10 68.9 75 48.0
SEGI_17870 Sequoiadendron giganteum HOM05D003654 ORTHO05D004176 1.7e-10 68.9 34 79.4
Solyc01g087580.3 Solanum lycopersicum HOM05D003654 ORTHO05D004176 1.7e-10 68.9 33 84.8
Sopen01g034550 Solanum pennellii HOM05D003654 ORTHO05D004176 1.7e-10 68.9 33 84.8
Aqoxy7G00792 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 2.3e-10 68.6 34 79.4
ClCG10G017020 Citrullus lanatus HOM05D003654 ORTHO05D004176 2.3e-10 68.6 41 68.3
Gohir.D11G328950 Gossypium hirsutum HOM05D003654 ORTHO05D004176 2.3e-10 68.6 37 73.0
Gorai.007G360300 Gossypium raimondii HOM05D003654 ORTHO05D004176 2.3e-10 68.6 37 73.0
HanXRQChr03g0062211 Helianthus annuus HOM05D003654 ORTHO05D004176 2.3e-10 68.6 42 69.0
Atru.chr11.2594 Acer truncatum HOM05D003654 ORTHO05D004176 3.0e-10 68.2 33 84.8
AL5G39020 Arabidopsis lyrata HOM05D003654 ORTHO05D004176 3.0e-10 68.2 31 87.1
CDE11G0735 Ceratophyllum demersum HOM05D003654 ORTHO05D004176 3.0e-10 68.2 35 80.0
Eucgr.H02820 Eucalyptus grandis HOM05D003654 ORTHO05D004176 3.0e-10 68.2 39 69.2
Gohir.A11G312450 Gossypium hirsutum HOM05D003654 ORTHO05D004176 3.0e-10 68.2 37 70.3
PGSC0003DMG400006788 Solanum tuberosum HOM05D003654 ORTHO05D004176 3.0e-10 68.2 41 73.2
Nn2g15259 Nelumbo nucifera HOM05D003654 ORTHO05D004176 3.9e-10 67.8 37 81.1
Atru.chr1.1086 Acer truncatum HOM05D003654 ORTHO05D004176 5.1e-10 67.4 35 71.4
Potri.016G055901 Populus trichocarpa HOM05D003654 ORTHO05D004176 5.1e-10 67.4 32 84.4
ATR0626G251 Amborella trichopoda HOM05D003654 ORTHO05D004176 6.6e-10 67.0 33 84.8
MBI17_g05505_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 6.6e-10 67.0 35 74.3
MBI17_g18370_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 6.6e-10 67.0 35 74.3
MBI17_g39959_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 6.6e-10 67.0 35 74.3
MBI17_g45827_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 6.6e-10 67.0 35 74.3
SalBow5G4200 Salvia bowleyana HOM05D003654 ORTHO05D004176 6.6e-10 67.0 45 64.4
Sp5g05150 Schrenkiella parvula HOM05D003654 ORTHO05D004176 6.6e-10 67.0 32 81.2
Atru.chr1.1087 Acer truncatum HOM05D003654 ORTHO05D004176 8.6e-10 66.6 35 68.6
CiPaw.09G037900 Carya illinoinensis HOM05D003654 ORTHO05D004176 1.1e-09 66.2 35 71.4
Peaxi162Scf00493g00002 Petunia axillaris HOM05D003654 ORTHO05D004176 1.1e-09 66.2 41 70.7
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 1.5e-09 65.9 43 69.8
Hma1.2p1_0226F.1_g095570 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.5e-09 65.9 36 72.2
Nn5g30179 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.5e-09 65.9 34 76.5
Nitab4.5_0006340g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 1.5e-09 65.9 35 74.3
Glyma.05G150100 Glycine max HOM05D003654 ORTHO05D004176 1.9e-09 65.5 39 69.2
Glyma.08G106900 Glycine max HOM05D003654 ORTHO05D004176 1.9e-09 65.5 39 69.2
Peaxi162Scf00071g01115 Petunia axillaris HOM05D003654 ORTHO05D004176 1.9e-09 65.5 70 44.3
Potri.009G058500 Populus trichocarpa HOM05D003654 ORTHO05D004176 1.9e-09 65.5 87 46.0
PGSC0003DMG400006789 Solanum tuberosum HOM05D003654 ORTHO05D004176 1.9e-09 65.5 33 78.8
A04p03110 Brassica napus HOM05D003654 ORTHO05D004176 2.5e-09 65.1 30 86.7
BraA04t16034Z Brassica rapa HOM05D003654 ORTHO05D004176 2.5e-09 65.1 30 86.7
CANSAT80G0428 Cannabis sativa HOM05D003654 ORTHO05D004176 2.5e-09 65.1 39 64.1
Nn1g04367 Nelumbo nucifera HOM05D003654 ORTHO05D004176 2.5e-09 65.1 37 75.7
Nitab4.5_0000707g0220 Nicotiana tabacum HOM05D003654 ORTHO05D004176 2.5e-09 65.1 35 74.3
QL04p008848 Quercus lobata HOM05D003654 ORTHO05D004176 2.5e-09 65.1 32 81.2
Sabra16G0058500 Salix brachista HOM05D003654 ORTHO05D004176 2.5e-09 65.1 31 83.9
Sed0004161 Sechium edule HOM05D003654 ORTHO05D004176 2.5e-09 65.1 33 72.7
SGA_v2.0_scaffold119G32750 Striga asiatica HOM05D003654 ORTHO05D004176 2.5e-09 65.1 33 81.8
Lsat_1_v5_gn_4_31200 Lactuca sativa HOM05D003654 ORTHO05D004176 3.3e-09 64.7 40 80.0
Nn1g05869 Nelumbo nucifera HOM05D003654 ORTHO05D004176 3.3e-09 64.7 33 78.8
Phvul.003G066700 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 3.3e-09 64.7 39 66.7
QL07p000287 Quercus lobata HOM05D003654 ORTHO05D004176 3.3e-09 64.7 33 75.8
ATR0626G210 Amborella trichopoda HOM05D003654 ORTHO05D004176 4.3e-09 64.3 33 78.8
CiPaw.13G007300 Carya illinoinensis HOM05D003654 ORTHO05D004176 4.3e-09 64.3 32 78.1
Sed0005344 Sechium edule HOM05D003654 ORTHO05D004176 4.3e-09 64.3 37 73.0
HPP92_012497 Vanilla planifolia HOM05D003654 ORTHO05D004176 4.3e-09 64.3 33 75.8
Cpa.g.c30295 Carica papaya HOM05D003654 ORTHO05D004176 5.6e-09 63.9 30 86.7
AUR62009401 Chenopodium quinoa HOM05D003654 ORTHO05D004176 5.6e-09 63.9 31 80.6
ECA234G3018 Erigeron canadensis HOM05D007122 ORTHO05D008918 5.6e-09 63.9 34 85.3
Migut.N01784 Erythranthe guttata HOM05D003654 ORTHO05D004176 5.6e-09 63.9 30 86.7
Nn7g36270 Nelumbo nucifera HOM05D003654 ORTHO05D004176 5.6e-09 63.9 45 66.7
Aqoxy7G00793 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 7.3e-09 63.5 35 71.4
AT3G57450 Arabidopsis thaliana HOM05D003654 ORTHO05D004176 7.3e-09 63.5 30 83.3
BcaB02g07603 Brassica carinata HOM05D003654 ORTHO05D004176 7.3e-09 63.5 30 83.3
BcaC08g44845 Brassica carinata HOM05D003654 ORTHO05D004176 7.3e-09 63.5 30 83.3
BolC6t37599H Brassica oleracea HOM05D003654 ORTHO05D004176 7.3e-09 63.5 30 83.3
ECA248G2069 Erigeron canadensis HOM05D003654 ORTHO05D004176 7.3e-09 63.5 33 84.8
Eucgr.A02353 Eucalyptus grandis HOM05D003654 ORTHO05D004176 7.3e-09 63.5 31 77.4
COL.COLO4_28276 Corchorus olitorius HOM05D003654 ORTHO05D004176 9.5e-09 63.2 30 83.3
MELO3C023573.2 Cucumis melo HOM05D003654 ORTHO05D004176 9.5e-09 63.2 32 81.2
Phvul.003G048800 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 9.5e-09 63.2 40 62.5
Zm00001eb215460 Zea mays HOM05D003654 ORTHO05D004176 9.5e-09 63.2 33 75.8
Solyc01g087570.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 1.2e-08 62.8 37 64.9
Sopen01g034540 Solanum pennellii HOM05D003654 ORTHO05D004176 1.2e-08 62.8 37 64.9
PGSC0003DMG400006790 Solanum tuberosum HOM05D003654 ORTHO05D004176 1.2e-08 62.8 37 64.9
Aqoxy7G00798 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 1.6e-08 62.4 37 67.6
Eucgr.G03361 Eucalyptus grandis HOM05D003654 ORTHO05D004176 1.6e-08 62.4 30 83.3
Manes.07G007900 Manihot esculenta HOM05D003654 ORTHO05D004176 2.1e-08 62.0 30 83.3
Nitab4.5_0000808g0050 Nicotiana tabacum HOM05D003654 ORTHO05D004176 2.8e-08 61.6 71 39.4
Prupe.7G061500 Prunus persica HOM05D003654 ORTHO05D004176 2.8e-08 61.6 31 74.2
Thecc.01G407700 Theobroma cacao HOM05D003654 ORTHO05D004176 2.8e-08 61.6 30 80.0
Ca_08602_v3 Cicer arietinum L. HOM05D003654 ORTHO05D004176 3.6e-08 61.2 37 64.9
Eucgr.A02351 Eucalyptus grandis HOM05D003654 ORTHO05D004176 3.6e-08 61.2 30 76.7
Hma1.2p1_0589F.1_g184810 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 3.6e-08 61.2 36 66.7
Sed0002974 Sechium edule HOM05D003654 ORTHO05D004176 3.6e-08 61.2 37 62.2
BcaB02g08316 Brassica carinata HOM05D003654 ORTHO05D004176 4.7e-08 60.8 30 76.7
Os03g0734500 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 4.7e-08 60.8 32 71.9
Sed0011402 Sechium edule HOM05D003654 ORTHO05D004176 4.7e-08 60.8 30 80.0
Ciclev10006585m.g Citrus clementina HOM05D003654 ORTHO05D004176 6.2e-08 60.5 30 76.7
Os10g0417300 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 6.2e-08 60.5 37 64.9
Cfa010801 Carpinus fangiana HOM05D003654 ORTHO05D004176 8.1e-08 60.1 30 80.0
DCAR_022378 Daucus carota HOM05D003654 ORTHO05D004176 8.1e-08 60.1 39 69.2
Migut.J01761 Erythranthe guttata HOM05D003654 ORTHO05D004176 8.1e-08 60.1 30 80.0
Os07g0185900 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 8.1e-08 60.1 29 82.8
Solyc08g044540.1 Solanum lycopersicum HOM05D003654 ORTHO05D004176 8.1e-08 60.1 69 43.5
Sopen08g013660 Solanum pennellii HOM05D003654 ORTHO05D004176 8.1e-08 60.1 69 43.5
Nitab4.5_0000733g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 1.1e-07 59.7 30 73.3
SalBow6G0563 Salvia bowleyana HOM05D003654 ORTHO05D004176 1.1e-07 59.7 29 82.8
Haze_03159 Corylus avellana HOM05D003654 ORTHO05D004176 1.8e-07 58.9 30 76.7
DCAR_003222 Daucus carota HOM05D003654 ORTHO05D004176 3.1e-07 58.2 31 74.2
Hma1.2p1_0493F.1_g164900 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 3.1e-07 58.2 40 60.0
Hma1.2p1_0493F.1_g164905 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 3.1e-07 58.2 40 60.0
Lsat_1_v5_gn_1_105600 Lactuca sativa HOM05D003654 ORTHO05D004176 4.0e-07 57.8 39 69.2
Manes.08G050800 Manihot esculenta HOM05D003654 ORTHO05D004176 4.0e-07 57.8 30 76.7
Sabra06G0035500 Salix brachista HOM05D000131 ORTHO05D004176 4.0e-07 57.8 34 67.6
Nitab4.5_0005680g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 5.2e-07 57.4 35 65.7
CSS0025582 Camellia sinensis var. sinensis HOM05D003654 ORTHO05D004176 1.2e-06 56.2 36 66.7
Psat5g210480 Pisum sativum HOM05D003654 ORTHO05D004176 1.2e-06 56.2 38 57.9
RcHm_v2.0_Chr3g0482181 Rosa chinensis HOM05D003654 ORTHO05D004176 1.2e-06 56.2 30 70.0
VMungo0251G2538 Vigna mungo HOM05D003654 ORTHO05D004176 1.2e-06 56.2 40 57.5
Prupe.8G033700 Prunus persica HOM05D003654 ORTHO05D004176 1.5e-06 55.8 31 71.0
Potri.012G032500 Populus trichocarpa HOM05D003654 ORTHO05D004176 2.0e-06 55.5 35 71.4
FAN02G2075 Fragaria x ananassa HOM05D003654 ORTHO05D004176 2.6e-06 55.1 30 66.7
RcHm_v2.0_Chr3g0482161 Rosa chinensis HOM05D003654 ORTHO05D004176 2.6e-06 55.1 30 66.7
Solyc02g071460.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 3.4e-06 54.7 30 63.3
CAN.G1258.3 Capsicum annuum HOM05D003654 ORTHO05D004176 4.4e-06 54.3 35 60.0
Peaxi162Scf00138g00032 Petunia axillaris HOM05D003654 ORTHO05D004176 4.4e-06 54.3 38 55.3
TPR.G28386 Trifolium pratense HOM05D003654 ORTHO05D004176 4.4e-06 54.3 37 56.8
Gohir.A09G122450 Gossypium hirsutum HOM05D003654 ORTHO05D004176 9.9e-06 53.1 26 80.8


User provided reference genes

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