Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0157500 Salix brachista HOM05D004378 ORTHO05D005269 2.0e-206 722.2 368 100.0
Potri.001G257500 Populus trichocarpa HOM05D004378 ORTHO05D005269 2.7e-195 685.3 371 93.0
Potri.009G052800 Populus trichocarpa HOM05D004378 ORTHO05D005269 1.7e-178 629.4 372 86.8
Sabra09G0038500 Salix brachista HOM05D004378 ORTHO05D005269 2.3e-162 575.9 467 68.7
Atru.chr3.2709 Acer truncatum HOM05D004378 ORTHO05D005269 3.4e-158 562.0 370 79.5
Manes.06G163800 Manihot esculenta HOM05D004378 ORTHO05D005269 3.9e-154 548.5 372 77.7
QL01p004640 Quercus lobata HOM05D004378 ORTHO05D005269 3.9e-154 548.5 371 76.8
TWI60G1037 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 5.6e-153 544.7 360 78.9
Lj6g0003660 Lotus japonicus HOM05D004378 ORTHO05D005269 2.8e-152 542.3 367 76.6
TWI34G1172 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 2.8e-152 542.3 354 80.5
CANSAT54G1532 Cannabis sativa HOM05D004378 ORTHO05D005269 6.2e-152 541.2 374 77.0
Prupe.4G250000 Prunus persica HOM05D004378 ORTHO05D005269 1.1e-151 540.4 359 77.4
Dinv22174 Davidia involucrata HOM05D004378 ORTHO05D005269 1.8e-151 539.7 336 80.7
CiPaw.14G118500 Carya illinoinensis HOM05D004378 ORTHO05D005269 3.1e-151 538.9 369 74.8
Hma1.2p1_0368F.1_g137300 Hydrangea macrophylla HOM05D004378 ORTHO05D005269 5.2e-151 538.1 336 80.4
CSS0043718 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 6.9e-151 537.7 362 77.6
Actinidia16337 Actinidia chinensis HOM05D004378 ORTHO05D005269 2.6e-150 535.8 363 76.6
Thecc.09G234500 Theobroma cacao HOM05D004378 ORTHO05D005269 3.8e-149 531.9 353 77.3
Ca_14874_v3 Cicer arietinum L. HOM05D004378 ORTHO05D005269 1.4e-148 530.0 366 74.3
arahy.Tifrunner.gnm1.ann1.B78H3K Arachis hypogaea HOM05D004378 ORTHO05D005269 5.4e-148 528.1 367 75.2
arahy.Tifrunner.gnm1.ann1.YL0VRD Arachis hypogaea HOM05D004378 ORTHO05D005269 5.4e-148 528.1 367 74.9
GSVIVG01025251001 Vitis vinifera HOM05D004378 ORTHO05D005269 5.4e-148 528.1 372 75.3
Cfa009777 Carpinus fangiana HOM05D004378 ORTHO05D005269 1.2e-147 526.9 338 79.3
Lalb_Chr15g0082531 Lupinus albus HOM05D004378 ORTHO05D005269 1.2e-147 526.9 366 74.3
Duzib150G1120 Durio zibethinus HOM05D004378 ORTHO05D005269 2.7e-147 525.8 342 78.4
Duzib168G0314 Durio zibethinus HOM05D004378 ORTHO05D005269 4.6e-147 525.0 355 75.5
Sed0026402 Sechium edule HOM05D004378 ORTHO05D005269 1.3e-146 523.5 371 73.0
Glyma.08G336000 Glycine max HOM05D004378 ORTHO05D005269 5.1e-146 521.5 362 73.8
Medtr3g061490 Medicago truncatula HOM05D004378 ORTHO05D005269 5.1e-146 521.5 366 73.8
TPR.G14725 Trifolium pratense HOM05D004378 ORTHO05D005269 6.6e-146 521.2 367 73.0
RcHm_v2.0_Chr5g0052271 Rosa chinensis HOM05D004378 ORTHO05D005269 8.7e-146 520.8 377 73.7
Ciclev10015746m.g Citrus clementina HOM05D004378 ORTHO05D005269 1.1e-145 520.4 358 75.1
DCAR_030049 Daucus carota HOM05D004378 ORTHO05D005269 1.1e-145 520.4 363 74.1
Gohir.A08G013900 Gossypium hirsutum HOM05D004378 ORTHO05D005269 1.1e-145 520.4 351 76.4
Gohir.D08G024400 Gossypium hirsutum HOM05D004378 ORTHO05D005269 1.1e-145 520.4 351 76.4
Gorai.004G019800 Gossypium raimondii HOM05D004378 ORTHO05D005269 1.1e-145 520.4 351 76.4
Nn2g15350 Nelumbo nucifera HOM05D004378 ORTHO05D005269 1.3e-144 516.9 373 72.1
CiPaw.13G159900 Carya illinoinensis HOM05D004378 ORTHO05D005269 1.6e-144 516.5 357 74.2
Actinidia06909 Actinidia chinensis HOM05D004378 ORTHO05D005269 2.1e-144 516.2 344 75.6
Haze_23143 Corylus avellana HOM05D004378 ORTHO05D005269 2.8e-144 515.8 356 77.0
Glyma.18G071100 Glycine max HOM05D004378 ORTHO05D005269 3.6e-144 515.4 362 74.3
TAR369G0513 Trochodendron aralioides HOM05D004378 ORTHO05D005269 4.8e-144 515.0 344 76.2
MD11G1192300 Malus domestica HOM05D004378 ORTHO05D005269 4.0e-143 511.9 359 73.5
Nn7g36225 Nelumbo nucifera HOM05D004378 ORTHO05D005269 9.0e-143 510.8 365 72.3
Lalb_Chr18g0050451 Lupinus albus HOM05D004378 ORTHO05D005269 1.2e-142 510.4 361 72.6
FvH4_3g28770 Fragaria vesca HOM05D004378 ORTHO05D005269 4.5e-142 508.4 377 71.6
VMungo0540G0714 Vigna mungo HOM05D004378 ORTHO05D005269 4.5e-142 508.4 362 73.5
Cc01_g04470 Coffea canephora HOM05D004378 ORTHO05D005269 9.9e-142 507.3 381 71.1
Phvul.006G062100 Phaseolus vulgaris HOM05D004378 ORTHO05D005269 1.3e-141 506.9 363 73.6
COL.COLO4_07579 Corchorus olitorius HOM05D004378 ORTHO05D005269 1.1e-140 503.8 320 80.6
ClCG03G013210 Citrullus lanatus HOM05D004378 ORTHO05D005269 2.4e-140 502.7 371 72.0
Eucgr.J00761 Eucalyptus grandis HOM05D004378 ORTHO05D005269 4.2e-140 501.9 361 71.7
Rhsim13G0220800 Rhododendron simsii HOM05D004378 ORTHO05D005269 5.4e-140 501.5 331 77.3
PGSC0003DMG400007339 Solanum tuberosum HOM05D004378 ORTHO05D005269 9.3e-140 500.7 363 73.3
FAN25G2048 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.6e-139 500.0 397 68.5
FAN11G1994 Fragaria x ananassa HOM05D004378 ORTHO05D005269 2.1e-139 499.6 397 68.5
Psat5g163880 Pisum sativum HOM05D004378 ORTHO05D005269 2.1e-139 499.6 366 69.9
MELO3C015197.2 Cucumis melo HOM05D004378 ORTHO05D005269 2.7e-139 499.2 368 70.9
CsaV3_1G042790 Cucumis sativus L. HOM05D004378 ORTHO05D005269 3.9e-138 495.4 370 70.5
ECA233G1578 Erigeron canadensis HOM05D004378 ORTHO05D005269 3.9e-138 495.4 372 69.6
Migut.D00605 Erythranthe guttata HOM05D004378 ORTHO05D005269 5.1e-138 495.0 362 71.3
FAN16G3181 Fragaria x ananassa HOM05D004378 ORTHO05D005269 5.1e-138 495.0 391 69.1
EL10Ac4g10244 Beta vulgaris HOM05D004378 ORTHO05D005269 8.7e-138 494.2 366 68.9
HanXRQChr13g0401501 Helianthus annuus HOM05D004378 ORTHO05D005269 4.3e-137 491.9 365 71.2
Nitab4.5_0000023g0700 Nicotiana tabacum HOM05D004378 ORTHO05D005269 9.6e-137 490.7 366 71.0
CDE05G0340 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 1.3e-136 490.3 354 71.2
CDE05G0884 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 1.3e-136 490.3 354 70.9
Peaxi162Scf00004g02527 Petunia axillaris HOM05D004378 ORTHO05D005269 2.4e-135 486.1 368 69.8
HanXRQChr02g0051301 Helianthus annuus HOM05D004378 ORTHO05D005269 3.1e-135 485.7 323 76.2
Oeu001481.2 Olea europaea HOM05D004378 ORTHO05D005269 4.0e-135 485.3 329 75.1
MBI04_g36075_MAGBIO Magnolia biondii HOM05D004378 ORTHO05D005269 5.3e-135 485.0 368 69.6
Peaxi162Scf00032g00327 Petunia axillaris HOM05D004378 ORTHO05D005269 5.3e-135 485.0 365 70.7
Aqoxy1G00284 Aquilegia oxysepala HOM05D004378 ORTHO05D005269 9.0e-135 484.2 365 67.4
AUR62000126 Chenopodium quinoa HOM05D004378 ORTHO05D005269 3.4e-134 482.3 368 67.9
Migut.N02321 Erythranthe guttata HOM05D004378 ORTHO05D005269 5.8e-134 481.5 346 72.5
Nitab4.5_0002786g0020 Nicotiana tabacum HOM05D004378 ORTHO05D005269 1.3e-133 480.3 380 68.2
CAN.G1204.2 Capsicum annuum HOM05D004378 ORTHO05D005269 1.7e-133 479.9 366 69.9
MSTRG.18430 Avicennia marina HOM05D004378 ORTHO05D005269 8.4e-133 477.6 349 71.3
PSO384G0525 Papaver somniferum HOM05D004378 ORTHO05D005269 1.4e-132 476.9 368 68.2
PSO339G6315 Papaver somniferum HOM05D004378 ORTHO05D005269 1.9e-132 476.5 367 67.8
Sopen11g025430 Solanum pennellii HOM05D004378 ORTHO05D005269 4.2e-132 475.3 363 70.0
Oeu016680.1 Olea europaea HOM05D004378 ORTHO05D005269 5.5e-132 474.9 332 72.3
CSS0001002 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 1.2e-131 473.8 327 75.5
Ah.06g194140 Amaranthus hybridus HOM05D004378 ORTHO05D005269 1.6e-131 473.4 368 67.1
Dinv36255 Davidia involucrata HOM05D004378 ORTHO05D005269 7.9e-131 471.1 293 80.2
SGA_v2.0_scaffold247G44883 Striga asiatica HOM05D004378 ORTHO05D005269 1.8e-130 469.9 317 75.1
PGSC0003DMG400010703 Solanum tuberosum HOM05D004378 ORTHO05D005269 2.3e-130 469.5 367 68.1
Manes.14G003200 Manihot esculenta HOM05D004378 ORTHO05D005269 3.9e-130 468.8 372 70.2
THA.LOC104799106 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 6.7e-130 468.0 353 68.8
Sopen01g003990 Solanum pennellii HOM05D004378 ORTHO05D005269 9.6e-129 464.2 364 67.6
Solyc01g008470.3 Solanum lycopersicum HOM05D004378 ORTHO05D005269 2.1e-128 463.0 364 67.3
Lsat_1_v5_gn_2_31060 Lactuca sativa HOM05D004378 ORTHO05D005269 2.4e-127 459.5 300 75.7
Lsat_1_v5_gn_6_26200 Lactuca sativa HOM05D004378 ORTHO05D005269 5.3e-127 458.4 357 68.3
THA.LOC104824616 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 5.3e-127 458.4 333 72.1
PGR119G1351 Punica granatum HOM05D004378 ORTHO05D005269 5.8e-126 454.9 336 70.8
SGA_v2.0_scaffold8G04586 Striga asiatica HOM05D004378 ORTHO05D005269 7.6e-126 454.5 333 71.8
Hund22027 Selenicereus undatus HOM05D004378 ORTHO05D005269 8.4e-125 451.1 363 64.2
THA.LOC104816878 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 2.5e-124 449.5 359 67.7
Lj2A629T47 Lonicera japonica HOM05D004378 ORTHO05D005269 2.7e-123 446.0 341 68.6
CARHR096800 Cardamine hirsuta HOM05D004378 ORTHO05D005269 1.3e-122 443.7 354 65.3
ATR0332G071 Amborella trichopoda HOM05D004378 ORTHO05D005269 2.3e-122 443.0 363 66.1
Aa31LG10G3540 Aethionema arabicum HOM05D004378 ORTHO05D005269 3.0e-122 442.6 312 71.5
Nitab4.5_0001587g0030 Nicotiana tabacum HOM05D004378 ORTHO05D005269 1.9e-121 439.9 350 66.3
unitig_699.g19136 Utricularia gibba HOM05D004378 ORTHO05D005269 1.3e-120 437.2 361 64.8
unitig_27.g24995 Utricularia gibba HOM05D004378 ORTHO05D005269 1.1e-119 434.1 374 62.6
Sed0000917 Sechium edule HOM05D004378 ORTHO05D005269 3.1e-119 432.6 387 62.3
BcaB04g20618 Brassica carinata HOM05D004378 ORTHO05D005269 1.2e-118 430.6 357 63.0
Nitab4.5_0002741g0140 Nicotiana tabacum HOM05D004378 ORTHO05D005269 1.5e-118 430.3 326 68.1
BraA05t21666Z Brassica rapa HOM05D004378 ORTHO05D005269 1.7e-117 426.8 361 62.3
C05p43130 Brassica napus HOM05D004378 ORTHO05D005269 3.8e-117 425.6 363 63.1
BolC5t33043H Brassica oleracea HOM05D004378 ORTHO05D005269 3.8e-117 425.6 363 63.1
A05p27790 Brassica napus HOM05D004378 ORTHO05D005269 5.0e-117 425.2 361 62.3
A01p33870 Brassica napus HOM05D004378 ORTHO05D005269 8.5e-117 424.5 356 61.8
Os02g0435000 Oryza sativa ssp. japonica HOM05D004378 ORTHO05D005269 1.1e-116 424.1 354 61.0
BcaB06g26169 Brassica carinata HOM05D004378 ORTHO05D005269 1.4e-116 423.7 367 63.2
Aa31LG8G7740 Aethionema arabicum HOM05D004378 ORTHO05D005269 1.9e-116 423.3 361 62.0
Carub.0003s2090 Capsella rubella HOM05D004378 ORTHO05D005269 3.2e-116 422.5 353 62.9
Sp3g18950 Schrenkiella parvula HOM05D004378 ORTHO05D005269 3.2e-116 422.5 356 62.6
BraA01t03495Z Brassica rapa HOM05D004378 ORTHO05D005269 4.2e-116 422.2 357 61.9
Zm00001eb064100 Zea mays HOM05D004378 ORTHO05D005269 5.5e-116 421.8 359 59.6
Zm00001eb210940 Zea mays HOM05D004378 ORTHO05D005269 2.1e-115 419.9 360 59.7
AT3G20920 Arabidopsis thaliana HOM05D004378 ORTHO05D005269 4.6e-115 418.7 337 65.3
Thhalv10021027m.g Eutrema salsugineum HOM05D004378 ORTHO05D005269 6.1e-115 418.3 356 62.4
BraA03t13351Z Brassica rapa HOM05D004378 ORTHO05D005269 7.4e-113 411.4 355 61.7
BcaC01g03532 Brassica carinata HOM05D004378 ORTHO05D005269 9.7e-113 411.0 353 60.6
C03p51390 Brassica napus HOM05D004378 ORTHO05D005269 9.7e-113 411.0 353 60.6
BcaB06g26167 Brassica carinata HOM05D004378 ORTHO05D005269 2.2e-112 409.8 330 65.2
A03p41980 Brassica napus HOM05D004378 ORTHO05D005269 3.7e-112 409.1 353 60.3
HPP92_024875 Vanilla planifolia HOM05D004378 ORTHO05D005269 6.3e-112 408.3 353 57.5
BolC3t17425H Brassica oleracea HOM05D004378 ORTHO05D005269 1.2e-110 404.1 358 60.1
Actinidia06345 Actinidia chinensis HOM05D004378 ORTHO05D005269 1.3e-109 400.6 277 74.0
SEGI_31334 Sequoiadendron giganteum HOM05D004378 ORTHO05D005269 5.7e-105 385.2 333 59.2
SHI29790 Sapria himalayana HOM05D004378 ORTHO05D005269 3.2e-100 369.4 331 62.5
BcaC05g28205 Brassica carinata HOM05D004378 ORTHO05D005269 7.2e-100 368.2 359 57.4
AL3G34880 Arabidopsis lyrata HOM05D004378 ORTHO05D005269 2.2e-96 356.7 274 65.3
vmacro04153 Vaccinium macrocarpon HOM05D004378 ORTHO05D005269 3.7e-96 355.9 309 62.5
Lj1A330G22 Lonicera japonica HOM05D004378 ORTHO05D005269 6.5e-93 345.1 276 66.3
SMO117G0234 Selaginella moellendorffii HOM05D004378 ORTHO05D005269 8.0e-91 338.2 337 52.8
Cpa.g.sc84.48 Carica papaya HOM05D004378 ORTHO05D005269 1.8e-90 337.0 233 76.0
BolC1t04284H Brassica oleracea HOM05D004378 ORTHO05D005269 4.0e-90 335.9 261 64.8
Mapoly0080s0045 Marchantia polymorpha HOM05D004378 ORTHO05D005269 2.1e-83 313.5 341 48.7
AagrBONN_evm.TU.Sc2ySwM_228.3794 Anthoceros agrestis HOM05D004378 ORTHO05D005269 2.7e-83 313.2 328 51.8
CAN.G494.6 Capsicum annuum HOM05D004378 ORTHO05D005269 8.0e-83 311.6 219 72.6
MD03G1174500 Malus domestica HOM05D004378 ORTHO05D005269 1.5e-81 307.4 218 73.9
Pp3c16_12820 Physcomitrium patens HOM05D004378 ORTHO05D005269 4.4e-81 305.8 270 55.6
FAN21G1987 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.1e-79 301.2 238 68.1
Sc09g0000750 Simmondsia chinensis HOM05D004378 ORTHO05D005269 1.8e-79 300.4 202 75.2
MSTRG.21374 Avicennia marina HOM05D004378 ORTHO05D005269 4.1e-79 299.3 209 74.6
Pp3c27_5530 Physcomitrium patens HOM05D004378 ORTHO05D005269 3.3e-76 289.7 362 47.8
Lalb_Chr20g0115221 Lupinus albus HOM05D004378 ORTHO05D005269 4.2e-76 289.3 213 69.5
Peaxi162Scf00004g02528 Petunia axillaris HOM05D004378 ORTHO05D005269 3.3e-68 263.1 272 54.4
CBR_g54322 Chara braunii HOM05D004378 ORTHO05D005269 1.1e-63 248.1 279 45.5
TAR623G1006 Trochodendron aralioides HOM05D004378 ORTHO05D005269 1.2e-51 208.0 175 67.4
TAR057G0002 Trochodendron aralioides HOM05D004378 ORTHO05D005269 1.4e-50 204.5 139 75.5
Lalb_Chr20g0115231 Lupinus albus HOM05D004378 ORTHO05D005269 2.3e-50 203.8 136 73.5
MSTRG.21373 Avicennia marina HOM05D004378 ORTHO05D005269 4.9e-48 196.1 138 73.2
AUR62019307 Chenopodium quinoa HOM05D004378 ORTHO05D005269 4.3e-44 183.0 165 58.8
SHI32640 Sapria himalayana HOM05D004378 ORTHO05D000001 1.5e-36 157.9 100 77.0
Sopen01g004010 Solanum pennellii HOM05D004378 ORTHO05D005269 2.0e-33 147.5 108 67.6
Cre02.g084050 Chlamydomonas reinhardtii HOM05D004378 ORTHO05D005269 1.1e-26 125.2 270 28.1
Solyc03g096225.1 Solanum lycopersicum HOM05D004378 ORTHO05D005269 5.3e-26 122.9 92 59.8
MCO14G148 Micromonas commoda HOM05D004378 ORTHO05D005269 1.1e-18 98.6 317 26.5


User provided reference genes

Program Settings