Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0155900 Salix brachista HOM05D001846 ORTHO05D005785 4.5e-265 917.5 516 100.0
Potri.001G256700 Populus trichocarpa HOM05D001846 ORTHO05D005785 1.5e-228 796.2 523 88.7
Potri.009G052400 Populus trichocarpa HOM05D001846 ORTHO05D005785 5.2e-205 718.0 524 82.1
Sabra09G0038200 Salix brachista HOM05D001846 ORTHO05D005785 2.0e-185 652.9 526 72.6
Manes.14G003700 Manihot esculenta HOM05D001846 ORTHO05D005785 2.4e-146 523.1 520 62.1
QL01p004435 Quercus lobata HOM05D001846 ORTHO05D005785 2.8e-142 509.6 525 57.9
Atru.chr3.2697 Acer truncatum HOM05D001846 ORTHO05D005785 1.8e-141 506.9 530 59.1
QL01p004534 Quercus lobata HOM05D001846 ORTHO05D005785 2.4e-141 506.5 525 57.5
TWI60G1588 Tripterygium wilfordii HOM05D001846 ORTHO05D005785 1.6e-137 493.8 518 57.3
Thecc.09G236100 Theobroma cacao HOM05D001846 ORTHO05D005785 3.7e-134 482.6 517 55.5
Manes.06G163200 Manihot esculenta HOM05D001846 ORTHO05D005785 4.8e-134 482.3 524 57.6
Thecc.09G235700 Theobroma cacao HOM05D001846 ORTHO05D005785 1.3e-131 474.2 506 56.1
Cfa009785 Carpinus fangiana HOM05D001846 ORTHO05D005785 2.9e-131 473.0 520 55.6
TAR369G0438 Trochodendron aralioides HOM05D001846 ORTHO05D005785 1.9e-130 470.3 518 56.2
Cpa.g.sc84.42 Carica papaya HOM05D001846 ORTHO05D005785 2.8e-126 456.4 520 56.0
Duzib150G0388 Durio zibethinus HOM05D001846 ORTHO05D005785 3.8e-123 446.0 521 54.1
MD11G1191400 Malus domestica HOM05D001846 ORTHO05D005785 3.2e-122 443.0 531 52.4
Ciclev10014939m.g Citrus clementina HOM05D001846 ORTHO05D005785 2.1e-121 440.3 523 54.3
GSVIVG01025241001 Vitis vinifera HOM05D001846 ORTHO05D005785 6.1e-121 438.7 510 54.5
Dinv36247 Davidia involucrata HOM05D001846 ORTHO05D005785 1.4e-120 437.6 530 55.1
CiPaw.13G159200 Carya illinoinensis HOM05D001846 ORTHO05D005785 3.0e-120 436.4 506 54.7
Haze_23151 Corylus avellana HOM05D001846 ORTHO05D005785 3.0e-120 436.4 515 53.2
TAR369G0720 Trochodendron aralioides HOM05D001846 ORTHO05D005785 2.6e-116 423.3 518 52.7
MD03G1173500 Malus domestica HOM05D001846 ORTHO05D005785 4.2e-114 416.0 518 52.1
CiPaw.14G118000 Carya illinoinensis HOM05D001846 ORTHO05D005785 1.2e-113 414.5 390 62.1
Duzib168G1640 Durio zibethinus HOM05D001846 ORTHO05D005785 4.7e-113 412.5 534 50.9
FAN21G3148 Fragaria x ananassa HOM05D001846 ORTHO05D005785 8.0e-113 411.8 528 52.3
FvH4_3g28690 Fragaria vesca HOM05D001846 ORTHO05D005785 1.4e-112 411.0 525 52.6
Lj3g0017471 Lotus japonicus HOM05D001846 ORTHO05D005785 2.3e-112 410.2 497 52.3
Prupe.4G251400 Prunus persica HOM05D001846 ORTHO05D005785 3.9e-112 409.5 518 50.4
CANSAT54G0460 Cannabis sativa HOM05D001846 ORTHO05D005785 4.4e-111 406.0 523 51.1
FAN16G0902 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.8e-109 400.6 562 48.8
FAN11G2083 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.1e-106 391.3 553 48.8
Gohir.D13G220500 Gossypium hirsutum HOM05D001846 ORTHO05D005785 9.4e-106 388.3 509 49.7
VMungo1127G1936 Vigna mungo HOM05D001846 ORTHO05D005785 1.2e-105 387.9 510 49.2
Phvul.011G021900 Phaseolus vulgaris HOM05D001846 ORTHO05D005785 6.1e-105 385.6 508 49.2
RcHm_v2.0_Chr5g0052391 Rosa chinensis HOM05D001846 ORTHO05D005785 1.0e-104 384.8 520 50.2
Eucgr.J00759 Eucalyptus grandis HOM05D001846 ORTHO05D005785 2.0e-103 380.6 516 47.9
Glyma.11G093300 Glycine max HOM05D001846 ORTHO05D005785 2.8e-102 376.7 517 48.0
Glyma.12G019500 Glycine max HOM05D001846 ORTHO05D005785 2.7e-100 370.2 506 48.2
Gohir.D09G110300 Gossypium hirsutum HOM05D001846 ORTHO05D005785 1.7e-99 367.5 534 47.4
Gorai.006G127900 Gossypium raimondii HOM05D001846 ORTHO05D005785 2.7e-97 360.1 534 47.2
Gorai.013G251400 Gossypium raimondii HOM05D001846 ORTHO05D005785 3.0e-96 356.7 571 45.0
COL.COLO4_06126 Corchorus olitorius HOM05D001846 ORTHO05D005785 2.2e-94 350.5 364 57.7
Hma1.2p1_1313F.1_g274970 Hydrangea macrophylla HOM05D001846 ORTHO05D005785 6.3e-94 349.0 531 48.6
Dinv22169 Davidia involucrata HOM05D001846 ORTHO05D005785 7.0e-93 345.5 465 49.2
Sc16g0011440 Simmondsia chinensis HOM05D001846 ORTHO05D005785 5.9e-92 342.4 526 46.0
Lalb_Chr19g0139851 Lupinus albus HOM05D001846 ORTHO05D005785 1.0e-91 341.7 367 55.3
Actinidia16341 Actinidia chinensis HOM05D001846 ORTHO05D005785 1.1e-90 338.2 510 46.1
FAN25G3740 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.1e-90 338.2 485 48.0
Lj3g0008415 Lotus japonicus HOM05D001846 ORTHO05D005785 1.9e-90 337.4 466 47.9
Lj3g0026618 Lotus japonicus HOM05D001846 ORTHO05D005785 1.9e-90 337.4 466 47.9
Actinidia06915 Actinidia chinensis HOM05D001846 ORTHO05D005785 1.6e-89 334.3 394 53.8
Psat7g170880 Pisum sativum HOM05D001846 ORTHO05D005785 2.3e-88 330.5 377 52.3
Ca_18965_v3 Cicer arietinum L. HOM05D001846 ORTHO05D005785 1.2e-87 328.2 391 52.9
AUR62019315 Chenopodium quinoa HOM05D001846 ORTHO05D005785 7.5e-87 325.5 527 43.6
Lj1A326G19 Lonicera japonica HOM05D001846 ORTHO05D005785 1.4e-85 321.2 444 48.0
PGR119G1478 Punica granatum HOM05D001846 ORTHO05D005785 7.0e-85 318.9 538 44.6
Medtr4g077160 Medicago truncatula HOM05D001846 ORTHO05D005785 1.1e-82 311.6 517 43.7
Nn7g36246 Nelumbo nucifera HOM05D001846 ORTHO05D005785 1.5e-82 311.2 446 46.6
AUR62000135 Chenopodium quinoa HOM05D001846 ORTHO05D005785 2.5e-82 310.5 527 42.5
Aqoxy2G00165 Aquilegia oxysepala HOM05D001846 ORTHO05D005785 4.3e-82 309.7 516 44.4
PSO700G0220 Papaver somniferum HOM05D001846 ORTHO05D005785 1.2e-81 308.1 536 44.2
Ah.06g194060 Amaranthus hybridus HOM05D001846 ORTHO05D005785 1.8e-80 304.3 526 41.6
PSO170G6025 Papaver somniferum HOM05D001846 ORTHO05D005785 5.8e-79 299.3 535 43.7
Solyc11g065630.3 Solanum lycopersicum HOM05D001846 ORTHO05D005785 8.3e-78 295.4 592 38.9
ClCG02G023130 Citrullus lanatus HOM05D001846 ORTHO05D005785 1.9e-77 294.3 503 41.6
Cc01_g04530 Coffea canephora HOM05D001846 ORTHO05D005785 4.1e-77 293.1 549 41.0
Sopen11g025350 Solanum pennellii HOM05D001846 ORTHO05D005785 1.2e-76 291.6 597 38.7
EL10Ac4g10235 Beta vulgaris HOM05D001846 ORTHO05D005785 3.9e-75 286.6 521 40.5
arahy.Tifrunner.gnm1.ann1.8PYD8T Arachis hypogaea HOM05D001846 ORTHO05D005785 3.6e-73 280.0 390 47.2
arahy.Tifrunner.gnm1.ann1.563I02 Arachis hypogaea HOM05D001846 ORTHO05D005785 3.4e-71 273.5 391 46.5
HanXRQChr13g0401091 Helianthus annuus HOM05D001846 ORTHO05D005785 2.9e-70 270.4 546 40.8
vmacro04149 Vaccinium macrocarpon HOM05D001846 ORTHO05D005785 2.9e-70 270.4 546 38.6
Nitab4.5_0002741g0070 Nicotiana tabacum HOM05D001846 ORTHO05D005785 8.3e-70 268.9 597 38.7
Lsat_1_v5_gn_6_25301 Lactuca sativa HOM05D001846 ORTHO05D005785 1.4e-69 268.1 485 39.4
ECA233G5307 Erigeron canadensis HOM05D001846 ORTHO05D005785 2.4e-69 267.3 569 37.8
MBI04_g43760_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 9.2e-69 265.4 494 41.9
THA.LOC104811173 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 9.2e-69 265.4 509 40.9
Sed0016770 Sechium edule HOM05D001846 ORTHO05D005785 4.6e-68 263.1 501 38.9
CAN.G71.16 Capsicum annuum HOM05D001846 ORTHO05D005785 7.8e-68 262.3 616 36.5
FAN25G3801 Fragaria x ananassa HOM05D001846 ORTHO05D005785 5.1e-67 259.6 495 41.2
DCAR_023761 Daucus carota HOM05D001846 ORTHO05D005785 8.6e-67 258.8 397 46.1
Hund22024 Selenicereus undatus HOM05D001846 ORTHO05D005785 1.9e-66 257.7 519 39.3
CsaV3_6G039320 Cucumis sativus L. HOM05D001846 ORTHO05D005785 2.3e-64 250.8 514 37.4
FAN25G3220 Fragaria x ananassa HOM05D001846 ORTHO05D005785 4.0e-64 250.0 313 51.4
AT1G51405 Arabidopsis thaliana HOM05D001846 ORTHO05D005785 2.2e-62 244.2 512 40.0
MELO3C014586.2 Cucumis melo HOM05D001846 ORTHO05D005785 2.9e-62 243.8 506 37.2
THA.LOC104817913 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 1.1e-61 241.9 496 39.5
Migut.D00610 Erythranthe guttata HOM05D001846 ORTHO05D005785 2.1e-60 237.7 412 42.7
Rhsim13G0220400 Rhododendron simsii HOM05D001846 ORTHO05D005785 6.0e-60 236.1 520 37.5
Peaxi162Scf00004g02629 Petunia axillaris HOM05D001846 ORTHO05D005785 5.1e-59 233.0 613 38.8
Thhalv10011423m.g Eutrema salsugineum HOM05D001846 ORTHO05D005785 6.6e-59 232.6 514 37.7
Nitab4.5_0007154g0020 Nicotiana tabacum HOM05D001846 ORTHO05D005785 3.3e-58 230.3 601 38.8
Oeu026419.1 Olea europaea HOM05D001846 ORTHO05D005785 2.8e-57 227.3 568 36.8
MSTRG.12465 Avicennia marina HOM05D001846 ORTHO05D005785 8.1e-57 225.7 520 37.9
Carub.0001s4028 Capsella rubella HOM05D001846 ORTHO05D005785 3.1e-56 223.8 527 36.8
MSTRG.17597 Avicennia marina HOM05D001846 ORTHO05D005785 2.2e-54 217.6 420 39.8
SGA_v2.0_scaffold8G04581 Striga asiatica HOM05D001846 ORTHO05D005785 2.9e-54 217.2 590 33.6
Sp1g38080 Schrenkiella parvula HOM05D001846 ORTHO05D005785 1.4e-53 214.9 511 36.6
CARHR041560 Cardamine hirsuta HOM05D001846 ORTHO05D005785 1.0e-51 208.8 506 35.8
CDE05G0547 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 2.3e-51 207.6 521 34.5
Aa31LG10G3580 Aethionema arabicum HOM05D000089 ORTHO05D005785 3.6e-49 200.3 506 36.0
ATR0332G095 Amborella trichopoda HOM05D001846 ORTHO05D005785 8.1e-49 199.1 538 32.9
HanXRQChr02g0051491 Helianthus annuus HOM05D001846 ORTHO05D005785 5.8e-47 193.0 546 31.9
BraA06t23456Z Brassica rapa HOM05D001846 ORTHO05D005785 2.4e-45 187.6 479 35.9
Oeu016678.1 Olea europaea HOM05D001846 ORTHO05D005785 2.1e-44 184.5 434 35.5
Gohir.A09G113600 Gossypium hirsutum HOM05D001846 ORTHO05D005785 6.6e-43 179.5 281 47.7
AL1G59260 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 8.7e-43 179.1 506 34.8
BcaB07g33587 Brassica carinata HOM05D001846 ORTHO05D005785 5.6e-42 176.4 484 34.3
SalBow1G1572 Salvia bowleyana HOM05D001846 ORTHO05D005785 7.3e-42 176.0 523 32.5
MBI04_g45701_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 6.2e-41 172.9 420 34.3
BolC3t21298H Brassica oleracea HOM05D001846 ORTHO05D005785 4.0e-40 170.2 502 33.9
C03p89760 Brassica napus HOM05D001846 ORTHO05D005785 6.9e-40 169.5 500 33.8
BcaC01g01249 Brassica carinata HOM05D001846 ORTHO05D005785 9.0e-40 169.1 501 33.7
SEGI_01920 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 9.0e-40 169.1 553 29.3
PGSC0003DMG400010305 Solanum tuberosum HOM05D001846 ORTHO05D005785 2.2e-38 164.5 308 41.2
BcaC08g43310 Brassica carinata HOM05D001846 ORTHO05D005785 1.2e-36 158.7 355 36.6
C06p06570 Brassica napus HOM05D001846 ORTHO05D005785 1.2e-36 158.7 482 33.6
BolC6t35770H Brassica oleracea HOM05D001846 ORTHO05D005785 1.2e-36 158.7 355 36.6
BraA08t32338Z Brassica rapa HOM05D001846 ORTHO05D005785 3.5e-36 157.1 516 31.6
A06p02500 Brassica napus HOM05D001846 ORTHO05D005785 6.7e-35 152.9 479 32.6
BcaB04g17234 Brassica carinata HOM05D001846 ORTHO05D005785 3.7e-33 147.1 497 31.6
Glyma.06G203350 Glycine max HOM05D001846 ORTHO05D005785 4.8e-33 146.7 145 58.6
MSTRG.18433 Avicennia marina HOM05D001846 ORTHO05D005785 4.5e-31 140.2 337 36.8
A08p03060 Brassica napus HOM05D001846 ORTHO05D005785 4.5e-31 140.2 516 30.4
Gohir.A09G113700 Gossypium hirsutum HOM05D001846 ORTHO05D005785 4.2e-29 133.7 205 42.0
Zm00001eb400050 Zea mays HOM05D001846 ORTHO05D005785 7.1e-29 132.9 444 30.4
MSTRG.21370 Avicennia marina HOM05D001846 ORTHO05D005785 1.6e-28 131.7 251 39.0
Zm00001eb008800 Zea mays HOM05D001846 ORTHO05D005785 7.9e-28 129.4 447 31.8
CDE05G3609 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 6.7e-27 126.3 297 36.4
Actinidia26798 Actinidia chinensis HOM05D001846 ORTHO05D005785 1.1e-26 125.6 218 39.4
HPP92_007908 Vanilla planifolia HOM05D001846 ORTHO05D005785 3.3e-26 124.0 357 31.4
QL02p066233 Quercus lobata HOM05D001846 ORTHO05D005785 8.2e-25 119.4 127 53.5
Nn2g13769 Nelumbo nucifera HOM05D001846 ORTHO05D005785 1.1e-21 109.0 306 35.6
CDE05G1816 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 3.5e-20 104.0 184 36.4
SGA_v2.0_scaffold247G44890 Striga asiatica HOM05D001846 ORTHO05D005785 3.0e-19 100.9 248 33.1
Nn6g35051 Nelumbo nucifera HOM05D001846 ORTHO05D005785 1.5e-18 98.6 104 51.0
Os03g0216900 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D005785 2.2e-17 94.7 350 30.0
MSTRG.18434 Avicennia marina HOM05D001846 ORTHO05D005785 5.5e-13 80.1 223 34.1
QL10p038631 Quercus lobata HOM05D001846 ORTHO05D005785 1.4e-11 75.5 100 49.0
Zm00001eb393780 Zea mays HOM05D001846 ORTHO05D005785 3.3e-10 70.9 201 31.8
MBI04_g34435_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 4.8e-09 67.0 82 52.4
Mapoly0001s0089 Marchantia polymorpha HOM05D001846 ORTHO05D005785 8.5e-06 56.2 348 25.0


User provided reference genes

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