Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0155500 Salix brachista HOM05D003733 ORTHO05D004035 3.9e-154 548.1 285 100.0
Sabra16G0157300 Salix brachista HOM05D003733 ORTHO05D004035 1.2e-147 526.6 285 96.8
Potri.001G257300 Populus trichocarpa HOM05D003733 ORTHO05D004035 4.9e-104 381.7 365 64.4
Sabra04G0103600 Salix brachista HOM05D003733 ORTHO05D004035 7.2e-31 138.7 134 61.9
Manes.06G161600 Manihot esculenta HOM05D003733 ORTHO05D004035 4.4e-28 129.4 248 40.7
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 1.3e-24 117.9 403 32.5
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 6.5e-24 115.5 291 36.4
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 2.7e-22 110.2 421 30.2
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 3.6e-22 109.8 303 35.0
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 1.0e-21 108.2 324 32.4
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 2.3e-21 107.1 405 31.1
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 5.2e-21 105.9 328 33.5
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 6.7e-21 105.5 373 28.7
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 6.7e-21 105.5 414 32.6
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 1.1e-20 104.8 359 32.6
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 2.8e-19 100.1 409 31.1
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.4e-18 97.8 405 28.4
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 1.8e-18 97.4 334 31.7
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 4.1e-18 96.3 408 31.1
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 9.1e-18 95.1 391 29.4
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 9.1e-18 95.1 421 30.9
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 9.1e-18 95.1 488 27.7
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 9.1e-18 95.1 388 31.7
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 9.1e-18 95.1 426 29.1
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 1.2e-17 94.7 332 34.0
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 2.6e-17 93.6 411 28.0
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 3.5e-17 93.2 475 27.6
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 3.5e-17 93.2 438 29.9
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 1.0e-16 91.7 345 33.6
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 1.0e-16 91.7 385 29.4
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 1.3e-16 91.3 385 29.9
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 2.2e-16 90.5 393 28.2
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 3.8e-16 89.7 437 28.6
Sp7g35500 Schrenkiella parvula HOM05D003733 ORTHO05D004035 1.5e-15 87.8 320 30.6
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 1.9e-15 87.4 401 27.7
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 2.5e-15 87.0 396 29.3
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 3.2e-15 86.7 332 33.4
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 7.2e-15 85.5 483 26.7
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 1.2e-14 84.7 393 29.8
COL.COLO4_36255 Corchorus olitorius HOM05D003733 ORTHO05D004035 2.7e-14 83.6 311 29.9
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 8.0e-14 82.0 140 39.3
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.0e-13 81.6 143 42.0
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 1.8e-13 80.9 141 40.4
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 2.3e-13 80.5 214 36.4
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 3.0e-13 80.1 337 26.4
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 5.2e-13 79.3 143 40.6
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 8.8e-13 78.6 413 27.4
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 8.8e-13 78.6 413 27.4
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 8.8e-13 78.6 396 28.8
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 8.8e-13 78.6 92 53.3
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 1.2e-12 78.2 139 42.4
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 2.0e-12 77.4 144 42.4
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 2.6e-12 77.0 172 38.4
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 3.4e-12 76.6 177 39.5
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 4.4e-12 76.3 139 38.8
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 4.4e-12 76.3 363 30.0
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 5.7e-12 75.9 384 28.9
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 5.7e-12 75.9 384 28.9
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 7.5e-12 75.5 251 34.3
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 1.3e-11 74.7 386 28.2
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 1.7e-11 74.3 215 33.0
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 1.7e-11 74.3 141 41.8
SGA_v2.0_scaffold55G19776 Striga asiatica HOM05D003733 ORTHO05D004035 2.2e-11 73.9 271 28.8
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 2.8e-11 73.6 229 31.9
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 3.7e-11 73.2 221 34.4
CARHR207720 Cardamine hirsuta HOM05D003733 ORTHO05D004035 3.7e-11 73.2 316 29.4
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 3.7e-11 73.2 369 28.5
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 4.8e-11 72.8 141 39.0
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 4.8e-11 72.8 129 41.9
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 6.3e-11 72.4 111 43.2
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 6.3e-11 72.4 215 32.6
Prupe.1G068500 Prunus persica HOM05D003733 ORTHO05D004035 6.3e-11 72.4 279 29.0
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 6.3e-11 72.4 188 35.6
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 8.3e-11 72.0 209 33.0
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 8.3e-11 72.0 221 34.8
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 1.1e-10 71.6 427 27.2
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 1.1e-10 71.6 141 38.3
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 1.4e-10 71.2 132 41.7
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 1.8e-10 70.9 230 31.7
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 1.8e-10 70.9 230 31.7
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 1.8e-10 70.9 500 24.6
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 1.8e-10 70.9 500 24.6
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 1.8e-10 70.9 201 31.3
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 1.8e-10 70.9 386 27.2
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 1.8e-10 70.9 247 33.2
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 3.1e-10 70.1 152 38.2
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 3.1e-10 70.1 129 42.6
BcaNung00969 Brassica carinata HOM05D003733 ORTHO05D004035 4.1e-10 69.7 87 51.7
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 4.1e-10 69.7 385 27.0
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 5.3e-10 69.3 156 37.8
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 7.0e-10 68.9 409 24.7
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 7.0e-10 68.9 112 41.1
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 7.0e-10 68.9 151 38.4
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 7.0e-10 68.9 187 34.2
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 7.0e-10 68.9 187 34.8
Thhalv10026061m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 9.1e-10 68.6 76 56.6
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 9.1e-10 68.6 170 36.5
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 9.1e-10 68.6 149 40.9
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 1.2e-09 68.2 187 34.2
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 1.6e-09 67.8 205 31.2
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 2.0e-09 67.4 206 33.0
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 2.0e-09 67.4 359 28.4
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 2.0e-09 67.4 420 26.2
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 2.7e-09 67.0 450 25.1
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 2.7e-09 67.0 201 34.8
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 4.5e-09 66.2 237 30.8
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 5.9e-09 65.9 169 33.7
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 5.9e-09 65.9 206 33.5
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 5.9e-09 65.9 149 38.3
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 7.7e-09 65.5 162 38.3
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 7.7e-09 65.5 142 38.0
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 7.7e-09 65.5 187 31.0
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 1.0e-08 65.1 170 35.9
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 1.3e-08 64.7 134 37.3
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 1.3e-08 64.7 435 25.7
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 1.7e-08 64.3 187 31.0
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 2.2e-08 63.9 138 36.2
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 2.2e-08 63.9 422 26.5
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 2.2e-08 63.9 187 31.0
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 2.2e-08 63.9 187 32.6
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 2.9e-08 63.5 143 32.9
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 3.8e-08 63.2 134 36.6
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 6.5e-08 62.4 134 35.8
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 6.5e-08 62.4 196 34.7
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 1.1e-07 61.6 133 36.1
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 1.1e-07 61.6 132 38.6
Os11g0296800 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 1.5e-07 61.2 165 31.5
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 1.9e-07 60.8 89 43.8
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 2.5e-07 60.5 185 29.7
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 3.2e-07 60.1 247 29.1
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 4.2e-07 59.7 204 33.8
AL7G12820 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 5.5e-07 59.3 253 27.3
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 5.5e-07 59.3 223 31.8
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 5.5e-07 59.3 284 27.8
Thhalv10000080m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 5.5e-07 59.3 47 61.7
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 5.5e-07 59.3 127 37.8
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 5.5e-07 59.3 132 35.6
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 5.5e-07 59.3 377 24.9
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 5.5e-07 59.3 145 31.0
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 9.4e-07 58.5 194 30.9
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 9.4e-07 58.5 315 25.4
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 1.2e-06 58.2 87 42.5
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 1.2e-06 58.2 385 23.6
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 1.6e-06 57.8 427 25.1
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 1.6e-06 57.8 136 36.0
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 1.6e-06 57.8 141 32.6
Os02g0664400 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 2.1e-06 57.4 356 26.7
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 2.7e-06 57.0 223 31.4
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 3.6e-06 56.6 386 25.6
Hma1.2p1_0723F.1_g208790 Hydrangea macrophylla HOM05D003733 ORTHO05D004035 3.6e-06 56.6 150 30.7
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 3.6e-06 56.6 170 31.2
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 4.7e-06 56.2 164 32.9
CANSAT11G2490 Cannabis sativa HOM05D003733 ORTHO05D004035 6.1e-06 55.8 126 38.9
Prupe.2G308100 Prunus persica HOM05D003733 ORTHO05D004035 8.0e-06 55.5 223 30.5
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 8.0e-06 55.5 373 26.3


User provided reference genes

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