Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0155200 Salix brachista HOM05D006549 ORTHO05D008080 1.2e-245 852.8 447 100.0
Potri.001G254600 Populus trichocarpa HOM05D006549 ORTHO05D008080 8.3e-175 617.5 445 77.3
Sabra09G0036200 Salix brachista HOM05D006549 ORTHO05D008080 6.1e-162 574.7 446 73.3
Potri.009G049700 Populus trichocarpa HOM05D006549 ORTHO05D008080 3.3e-155 552.4 446 70.0
Manes.14G005500 Manihot esculenta HOM05D006549 ORTHO05D008080 2.5e-131 473.0 464 62.7
CiPaw.13G153800 Carya illinoinensis HOM05D006549 ORTHO05D008080 3.4e-120 436.0 450 60.0
GSVIVG01031548001 Vitis vinifera HOM05D006549 ORTHO05D008080 3.5e-117 426.0 462 56.9
Gohir.D09G108300 Gossypium hirsutum HOM05D006549 ORTHO05D008080 4.3e-115 419.1 449 59.5
Gohir.A09G111700 Gossypium hirsutum HOM05D006549 ORTHO05D008080 9.6e-115 417.9 449 59.0
Gorai.006G126000 Gossypium raimondii HOM05D006549 ORTHO05D008080 2.8e-114 416.4 449 59.2
Thecc.09G240800 Theobroma cacao HOM05D006549 ORTHO05D008080 4.0e-113 412.5 452 57.1
TWI39G1226 Tripterygium wilfordii HOM05D006549 ORTHO05D008080 4.9e-111 405.6 448 57.4
MD03G1170300 Malus domestica HOM05D006549 ORTHO05D008080 1.1e-110 404.4 481 53.8
CANSAT54G0570 Cannabis sativa HOM05D006549 ORTHO05D008080 4.2e-110 402.5 451 55.2
Dinv22152 Davidia involucrata HOM05D006549 ORTHO05D008080 4.2e-110 402.5 447 55.5
Duzib170G0947 Durio zibethinus HOM05D006549 ORTHO05D008080 4.2e-110 402.5 449 57.7
Eucgr.B03712 Eucalyptus grandis HOM05D006549 ORTHO05D008080 1.0e-108 397.9 443 55.3
MD11G1187800 Malus domestica HOM05D006549 ORTHO05D008080 1.3e-108 397.5 469 53.1
FvH4_3g28330 Fragaria vesca HOM05D006549 ORTHO05D008080 3.9e-108 396.0 460 53.7
FAN11G3700 Fragaria x ananassa HOM05D006549 ORTHO05D008080 8.7e-108 394.8 460 53.7
Ciclev10015584m.g Citrus clementina HOM05D006549 ORTHO05D008080 2.5e-107 393.3 448 54.2
Nn7g36445 Nelumbo nucifera HOM05D006549 ORTHO05D008080 5.6e-107 392.1 471 54.6
Prupe.4G256800 Prunus persica HOM05D006549 ORTHO05D008080 7.4e-107 391.7 527 48.0
RcHm_v2.0_Chr5g0051211 Rosa chinensis HOM05D006549 ORTHO05D008080 1.6e-106 390.6 458 54.1
Haze_23190 Corylus avellana HOM05D006549 ORTHO05D008080 3.7e-106 389.4 514 52.3
Sed0027042 Sechium edule HOM05D006549 ORTHO05D008080 3.7e-106 389.4 466 53.9
PGR102G0709 Punica granatum HOM05D006549 ORTHO05D008080 6.2e-106 388.7 456 55.5
CARHR200690 Cardamine hirsuta HOM05D006549 ORTHO05D008080 1.8e-105 387.1 433 54.0
Actinidia06932 Actinidia chinensis HOM05D006549 ORTHO05D008080 2.4e-105 386.7 451 54.5
FAN21G3651 Fragaria x ananassa HOM05D006549 ORTHO05D008080 2.4e-105 386.7 464 53.4
Medtr5g009010 Medicago truncatula HOM05D006549 ORTHO05D008080 2.4e-105 386.7 442 52.3
Actinidia16353 Actinidia chinensis HOM05D006549 ORTHO05D008080 4.0e-105 386.0 445 55.7
BraA03t09898Z Brassica rapa HOM05D006549 ORTHO05D008080 9.0e-105 384.8 436 51.6
Glyma.11G015900 Glycine max HOM05D006549 ORTHO05D008080 9.0e-105 384.8 440 55.7
Sc09g0000890 Simmondsia chinensis HOM05D006549 ORTHO05D008080 1.2e-104 384.4 460 52.2
ClCG03G013060 Citrullus lanatus HOM05D006549 ORTHO05D008080 2.0e-104 383.6 455 54.5
C09p64480 Brassica napus HOM05D006549 ORTHO05D008080 2.6e-104 383.3 432 53.2
BolC9t59282H Brassica oleracea HOM05D006549 ORTHO05D008080 2.6e-104 383.3 432 53.2
CsaV3_1G043000 Cucumis sativus L. HOM05D006549 ORTHO05D008080 5.8e-104 382.1 460 53.3
Oeu025891.1 Olea europaea HOM05D006549 ORTHO05D008080 5.8e-104 382.1 456 52.9
Glyma.01G226800 Glycine max HOM05D006549 ORTHO05D008080 1.0e-103 381.3 453 53.9
Cc01_g06100 Coffea canephora HOM05D006549 ORTHO05D008080 1.3e-103 380.9 440 52.3
THA.LOC104811185 Tarenaya hassleriana HOM05D006549 ORTHO05D008080 1.7e-103 380.6 443 53.7
arahy.Tifrunner.gnm1.ann1.2W4GIE Arachis hypogaea HOM05D006549 ORTHO05D008080 4.9e-103 379.0 428 54.9
BolC3t13156H Brassica oleracea HOM05D006549 ORTHO05D008080 6.5e-103 378.6 428 53.0
VMungo1215G3210 Vigna mungo HOM05D006549 ORTHO05D008080 8.4e-103 378.3 451 53.4
CSS0047891 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 2.5e-102 376.7 425 55.3
TPR.G38023 Trifolium pratense HOM05D006549 ORTHO05D008080 3.2e-102 376.3 444 52.5
Phvul.002G033900 Phaseolus vulgaris HOM05D006549 ORTHO05D008080 9.3e-102 374.8 458 53.1
QL01p018141 Quercus lobata HOM05D006549 ORTHO05D008080 1.2e-101 374.4 465 53.5
Nitab4.5_0006878g0020 Nicotiana tabacum HOM05D006549 ORTHO05D008080 3.5e-101 372.9 454 52.2
AL6G23210 Arabidopsis lyrata HOM05D006549 ORTHO05D008080 7.9e-101 371.7 430 53.7
BraA10t44605Z Brassica rapa HOM05D006549 ORTHO05D008080 2.3e-100 370.2 431 51.3
Atru.chr3.2633 Acer truncatum HOM05D006549 ORTHO05D008080 8.7e-100 368.2 427 55.7
Dinv36213 Davidia involucrata HOM05D006549 ORTHO05D008080 2.5e-99 366.7 447 51.5
Migut.N02355 Erythranthe guttata HOM05D006549 ORTHO05D008080 2.5e-99 366.7 445 51.7
AUR62000165 Chenopodium quinoa HOM05D006549 ORTHO05D008080 4.3e-99 365.9 450 49.6
arahy.Tifrunner.gnm1.ann1.9560XR Arachis hypogaea HOM05D006549 ORTHO05D008080 1.3e-98 364.4 427 53.6
AT5G12410 Arabidopsis thaliana HOM05D006549 ORTHO05D008080 1.6e-98 364.0 437 52.4
COL.COLO4_36476 Corchorus olitorius HOM05D006549 ORTHO05D008080 2.8e-98 363.2 448 53.1
DCAR_000660 Daucus carota HOM05D006549 ORTHO05D008080 2.8e-98 363.2 488 48.6
A03p05610 Brassica napus HOM05D006549 ORTHO05D008080 8.2e-98 361.7 420 50.5
A10p25410 Brassica napus HOM05D006549 ORTHO05D008080 1.4e-97 360.9 430 50.0
Aa31LG3G14820 Aethionema arabicum HOM05D006549 ORTHO05D008080 2.4e-97 360.1 446 50.9
Sp6g31230 Schrenkiella parvula HOM05D006549 ORTHO05D008080 2.0e-96 357.1 458 49.8
Lsat_1_v5_gn_2_29261 Lactuca sativa HOM05D006549 ORTHO05D008080 3.4e-96 356.3 453 50.1
Lalb_Chr09g0320561 Lupinus albus HOM05D006549 ORTHO05D008080 3.4e-96 356.3 463 47.9
Nitab4.5_0002726g0080 Nicotiana tabacum HOM05D006549 ORTHO05D008080 3.4e-96 356.3 456 50.2
MSTRG.17620 Avicennia marina HOM05D006549 ORTHO05D008080 1.0e-95 354.8 449 52.6
AUR62039846 Chenopodium quinoa HOM05D006549 ORTHO05D008080 1.0e-95 354.8 449 51.2
ECA238G1745 Erigeron canadensis HOM05D006549 ORTHO05D008080 2.9e-95 353.2 425 49.6
Aqoxy1G00310 Aquilegia oxysepala HOM05D006549 ORTHO05D008080 1.1e-94 351.3 443 49.4
Rhsim13G0217400 Rhododendron simsii HOM05D002345 ORTHO05D002391 1.1e-94 351.3 425 52.5
EL10Ac4g10185 Beta vulgaris HOM05D006549 ORTHO05D008080 1.4e-94 350.9 452 48.7
Carub.0006s1091 Capsella rubella HOM05D006549 ORTHO05D008080 1.9e-94 350.5 432 51.6
vmacro04120 Vaccinium macrocarpon HOM05D006549 ORTHO05D008080 2.5e-94 350.1 417 50.4
Thhalv10013724m.g Eutrema salsugineum HOM05D006549 ORTHO05D008080 9.4e-94 348.2 469 48.2
HanXRQChr14g0433001 Helianthus annuus HOM05D006549 ORTHO05D008080 9.4e-94 348.2 433 50.3
CAN.G633.4 Capsicum annuum HOM05D006549 ORTHO05D008080 1.8e-92 344.0 455 48.1
Hund07453 Selenicereus undatus HOM05D006549 ORTHO05D008080 1.8e-92 344.0 445 48.8
Oeu061298.1 Olea europaea HOM05D006549 ORTHO05D008080 1.1e-91 341.3 628 41.2
PGSC0003DMG400031244 Solanum tuberosum HOM05D006549 ORTHO05D008080 2.5e-91 340.1 449 49.2
Psat2g186960 Pisum sativum HOM05D000745 ORTHO05D000641 3.3e-91 339.7 425 50.1
Sopen11g024900 Solanum pennellii HOM05D006549 ORTHO05D008080 3.3e-91 339.7 451 49.4
C03p06560 Brassica napus HOM05D006549 ORTHO05D008080 5.7e-91 339.0 421 48.2
Ca_24492_v3 Cicer arietinum L. HOM05D000745 ORTHO05D000641 9.7e-91 338.2 420 51.9
Solyc11g065180.2 Solanum lycopersicum HOM05D006549 ORTHO05D008080 1.3e-90 337.8 450 49.1
LjContig00222g0000121 Lotus japonicus HOM05D006549 ORTHO05D008080 1.0e-87 328.2 529 42.7
QL01p018092 Quercus lobata HOM05D006549 ORTHO05D008080 6.5e-87 325.5 402 54.0
Os11g0568600 Oryza sativa ssp. japonica HOM05D006549 ORTHO05D008080 1.4e-86 324.3 449 44.8
SGA_v2.0_scaffold42G16082 Striga asiatica HOM05D006549 ORTHO05D008080 7.2e-86 322.0 443 47.2
Zm00001eb200070 Zea mays HOM05D006549 ORTHO05D008080 9.4e-86 321.6 459 45.5
ATR0721G160 Amborella trichopoda HOM05D006549 ORTHO05D008080 1.2e-85 321.2 451 45.0
BcaB01g05403 Brassica carinata HOM05D006549 ORTHO05D008080 1.6e-85 320.9 477 43.6
PSO384G3463 Papaver somniferum HOM05D006549 ORTHO05D008080 1.6e-85 320.9 444 50.0
Peaxi162Scf00004g03918 Petunia axillaris HOM05D006549 ORTHO05D008080 1.6e-85 320.9 443 45.6
unitig_27.g25003 Utricularia gibba HOM05D006549 ORTHO05D008080 1.6e-85 320.9 446 46.0
CDE08G0181 Ceratophyllum demersum HOM05D006549 ORTHO05D008080 2.7e-85 320.1 427 43.6
PSO339G6663 Papaver somniferum HOM05D006549 ORTHO05D008080 3.0e-84 316.6 445 49.4
MBI13_g04769_MAGBIO Magnolia biondii HOM05D006549 ORTHO05D008080 9.7e-83 311.6 475 43.4
Lju41A40T23 Lonicera japonica HOM05D006549 ORTHO05D008080 1.5e-78 297.7 388 50.3
Ah.06g193800 Amaranthus hybridus HOM05D006549 ORTHO05D008080 2.4e-73 280.4 447 43.0
BcaB08g37001 Brassica carinata HOM05D006549 ORTHO05D008080 5.9e-72 275.8 426 42.0
SEGI_14205 Sequoiadendron giganteum HOM05D006549 ORTHO05D008080 5.7e-67 259.2 451 40.4
FAN16G0297 Fragaria x ananassa HOM05D006549 ORTHO05D008080 1.1e-57 228.4 227 54.6
TAR633G0410 Trochodendron aralioides HOM05D006549 ORTHO05D008080 1.2e-51 208.4 206 56.3
Duzib168G0228 Durio zibethinus HOM05D006549 ORTHO05D008080 1.7e-50 204.5 337 48.1
SHI46597 Sapria himalayana HOM05D006549 ORTHO05D008080 8.6e-47 192.2 407 35.6
Hma1.2p1_1043F.1_g251200 Hydrangea macrophylla HOM05D006549 ORTHO05D008080 4.7e-45 186.4 200 50.0
AagrBONN_evm.TU.Sc2ySwM_228.1610 Anthoceros agrestis HOM05D006549 ORTHO05D008080 7.8e-40 169.1 437 28.8
Mapoly0091s0083 Marchantia polymorpha HOM05D006549 ORTHO05D008080 2.5e-38 164.1 450 29.1
SMO013G0006 Selaginella moellendorffii HOM05D006549 ORTHO05D008080 1.1e-36 158.7 429 28.4
MELO3C015170.2 Cucumis melo HOM05D006549 ORTHO05D008080 7.1e-33 146.0 101 72.3
Pp3c3_2270 Physcomitrium patens HOM05D006549 ORTHO05D008080 9.2e-33 145.6 436 28.4
Cc01_g06170 Coffea canephora HOM05D006549 ORTHO05D008080 3.0e-31 140.6 177 46.3
CBR_g300 Chara braunii HOM05D006549 ORTHO05D008080 4.1e-25 120.2 306 28.1
HPP92_011577 Vanilla planifolia HOM05D006549 ORTHO05D008080 1.6e-24 118.2 221 39.4
BolC3t13160H Brassica oleracea HOM05D006549 ORTHO05D008080 4.6e-24 116.7 78 70.5
MELO3C029487.2 Cucumis melo HOM05D006549 ORTHO05D008080 1.6e-21 108.2 67 77.6
Cpa.g.sc84.3 Carica papaya HOM05D006549 ORTHO05D008080 3.6e-21 107.1 56 91.1
PRCOL_00001563 Prasinoderma coloniale HOM05D006549 ORTHO05D008080 1.4e-17 95.1 242 28.9
Cpa.g.c41750 Carica papaya HOM05D006549 ORTHO05D008080 9.3e-17 92.4 60 71.7
CSS0036252 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 5.1e-15 86.7 60 70.0
MCO09G159 Micromonas commoda HOM05D006549 ORTHO05D008080 1.9e-14 84.7 278 25.2
Cre14.g629550 Chlamydomonas reinhardtii HOM05D006549 ORTHO05D008080 4.9e-10 70.1 240 25.0


User provided reference genes

Program Settings