Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0148900 Salix brachista HOM05D005278 ORTHO05D006500 7.4e-265 916.8 499 100.0
Potri.001G245500 Populus trichocarpa HOM05D005278 ORTHO05D006500 4.2e-212 741.5 449 92.2
Manes.02G127600 Manihot esculenta HOM05D005278 ORTHO05D006500 1.3e-165 587.0 449 75.5
Sabra09G0026700 Salix brachista HOM05D005278 ORTHO05D006500 5.8e-161 571.6 478 72.0
QL01p028069 Quercus lobata HOM05D005278 ORTHO05D006500 1.9e-159 566.6 447 73.8
Cpa.g.sc81.65 Carica papaya HOM05D005278 ORTHO05D006500 2.4e-159 566.2 450 71.8
Ciclev10028430m.g Citrus clementina HOM05D005278 ORTHO05D006500 7.1e-159 564.7 451 72.7
CSS0023124 Camellia sinensis var. sinensis HOM05D005278 ORTHO05D006500 4.6e-158 562.0 451 72.7
Gorai.003G128600 Gossypium raimondii HOM05D005278 ORTHO05D006500 6.0e-158 561.6 447 72.9
Gohir.A03G045500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 1.7e-157 560.1 447 72.7
Manes.01G168300 Manihot esculenta HOM05D005278 ORTHO05D006500 5.6e-156 555.1 457 71.8
CiPaw.14G064400 Carya illinoinensis HOM05D005278 ORTHO05D006500 1.4e-151 540.4 449 70.6
MD11G1092400 Malus domestica HOM05D005278 ORTHO05D006500 4.2e-151 538.9 449 69.3
Dinv17056 Davidia involucrata HOM05D005278 ORTHO05D006500 7.1e-151 538.1 465 68.6
Dinv43000 Davidia involucrata HOM05D005278 ORTHO05D006500 7.1e-151 538.1 465 68.6
GSVIVG01024871001 Vitis vinifera HOM05D005278 ORTHO05D006500 9.3e-151 537.7 449 69.3
TAR369G1109 Trochodendron aralioides HOM05D005278 ORTHO05D006500 1.2e-150 537.3 450 71.3
vmacro03023 Vaccinium macrocarpon HOM05D005278 ORTHO05D006500 2.1e-150 536.6 467 68.5
Hma1.2p1_0274F.1_g110490 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 1.0e-149 534.3 452 69.9
Prupe.6G068200 Prunus persica HOM05D005278 ORTHO05D006500 6.7e-149 531.6 449 68.4
FAN11G2960 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.9e-148 530.0 449 69.0
Cc01_g13430 Coffea canephora HOM05D005278 ORTHO05D006500 4.3e-148 528.9 451 68.5
Cfa011575 Carpinus fangiana HOM05D005278 ORTHO05D006500 1.3e-147 527.3 438 71.9
FAN21G0275 Fragaria x ananassa HOM05D005278 ORTHO05D006500 6.2e-147 525.0 449 68.4
RcHm_v2.0_Chr5g0066731 Rosa chinensis HOM05D005278 ORTHO05D006500 6.2e-147 525.0 449 67.9
FvH4_3g37100 Fragaria vesca HOM05D005278 ORTHO05D006500 2.4e-146 523.1 449 67.9
Oeu004184.2 Olea europaea HOM05D005278 ORTHO05D006500 3.1e-146 522.7 450 69.1
Gohir.D03G121500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 4.0e-146 522.3 424 72.2
FAN16G0192 Fragaria x ananassa HOM05D005278 ORTHO05D006500 9.0e-146 521.2 449 68.4
TWI79G1569 Tripterygium wilfordii HOM05D005278 ORTHO05D006500 1.3e-144 517.3 450 67.8
Thecc.09G313600 Theobroma cacao HOM05D005278 ORTHO05D006500 4.9e-144 515.4 452 69.0
Nitab4.5_0000507g0040 Nicotiana tabacum HOM05D005278 ORTHO05D006500 2.5e-143 513.1 449 65.9
Carub.0008s1974 Capsella rubella HOM05D005278 ORTHO05D006500 1.3e-141 507.3 447 67.1
THA.LOC104814887 Tarenaya hassleriana HOM05D005278 ORTHO05D006500 1.8e-141 506.9 450 65.6
Nitab4.5_0006512g0020 Nicotiana tabacum HOM05D005278 ORTHO05D006500 2.3e-141 506.5 447 65.8
Sed0022829 Sechium edule HOM05D005278 ORTHO05D006500 2.3e-141 506.5 449 65.7
Actinidia08546 Actinidia chinensis HOM05D005278 ORTHO05D006500 3.0e-141 506.1 438 67.8
DCAR_007424 Daucus carota HOM05D005278 ORTHO05D006500 2.5e-140 503.1 460 64.3
MSTRG.12654 Avicennia marina HOM05D005278 ORTHO05D006500 3.3e-140 502.7 450 66.4
Lj1A145T60 Lonicera japonica HOM05D005278 ORTHO05D006500 4.3e-140 502.3 452 67.7
Rhsim13G0076600 Rhododendron simsii HOM05D005278 ORTHO05D006500 5.7e-140 501.9 450 66.9
Dinv43097 Davidia involucrata HOM05D005278 ORTHO05D006500 2.8e-139 499.6 441 67.6
HanXRQChr01g0010681 Helianthus annuus HOM05D005278 ORTHO05D006500 4.8e-139 498.8 458 65.9
AUR62001727 Chenopodium quinoa HOM05D005278 ORTHO05D006500 6.2e-139 498.4 446 66.4
Migut.N00899 Erythranthe guttata HOM05D005278 ORTHO05D006500 6.9e-138 495.0 453 65.8
CANSAT54G0396 Cannabis sativa HOM05D005278 ORTHO05D006500 9.0e-138 494.6 449 66.4
CARHR285340 Cardamine hirsuta HOM05D005278 ORTHO05D006500 3.4e-137 492.7 447 64.7
Aa31LG4G15720 Aethionema arabicum HOM05D005278 ORTHO05D006500 4.5e-137 492.3 454 65.6
Hund18883 Selenicereus undatus HOM05D005278 ORTHO05D006500 5.8e-137 491.9 442 64.9
Aqoxy1G00819 Aquilegia oxysepala HOM05D005278 ORTHO05D006500 6.5e-136 488.4 447 65.3
Glyma.15G035200 Glycine max HOM05D005278 ORTHO05D006500 1.1e-135 487.6 451 64.7
arahy.Tifrunner.gnm1.ann1.NY9X43 Arachis hypogaea HOM05D005278 ORTHO05D006500 1.9e-135 486.9 449 62.8
CAN.G173.8 Capsicum annuum HOM05D005278 ORTHO05D006500 1.9e-135 486.9 449 62.8
Ca_01301_v3 Cicer arietinum L. HOM05D005278 ORTHO05D006500 1.2e-134 484.2 449 64.1
BolC9t57995H Brassica oleracea HOM05D005278 ORTHO05D006500 3.5e-134 482.6 462 64.1
A10p16320 Brassica napus HOM05D005278 ORTHO05D006500 4.6e-134 482.3 447 65.5
arahy.Tifrunner.gnm1.ann1.4JU9WJ Arachis hypogaea HOM05D005278 ORTHO05D006500 1.0e-133 481.1 445 62.2
BraA10t43715Z Brassica rapa HOM05D005278 ORTHO05D006500 1.0e-133 481.1 445 65.6
Lsat_1_v5_gn_5_169740 Lactuca sativa HOM05D005278 ORTHO05D006500 1.0e-133 481.1 456 62.5
Peaxi162Scf00676g00221 Petunia axillaris HOM05D005278 ORTHO05D006500 1.3e-133 480.7 444 64.4
EL10Ac7g16079 Beta vulgaris HOM05D005278 ORTHO05D006500 3.9e-133 479.2 445 64.7
Lalb_Chr24g0397151 Lupinus albus HOM05D005278 ORTHO05D006500 5.1e-133 478.8 449 62.6
Lj3g0005158 Lotus japonicus HOM05D005278 ORTHO05D006500 8.7e-133 478.0 449 62.1
VMungo1080G1008 Vigna mungo HOM05D005278 ORTHO05D006500 8.7e-133 478.0 451 62.7
AUR62020048 Chenopodium quinoa HOM05D005278 ORTHO05D006500 1.1e-132 477.6 446 64.6
PGR102G1735 Punica granatum HOM05D005278 ORTHO05D006500 1.5e-132 477.2 451 63.6
Ah.08g220210 Amaranthus hybridus HOM05D005278 ORTHO05D006500 1.9e-132 476.9 446 63.9
Sopen09g019050 Solanum pennellii HOM05D005278 ORTHO05D006500 4.3e-132 475.7 449 62.1
C09p51370 Brassica napus HOM05D005278 ORTHO05D006500 1.3e-131 474.2 447 64.9
ClCG02G019860 Citrullus lanatus HOM05D005278 ORTHO05D006500 1.6e-131 473.8 449 63.5
BcaB08g36287 Brassica carinata HOM05D005278 ORTHO05D006500 2.2e-131 473.4 447 64.0
ECA248G1020 Erigeron canadensis HOM05D005278 ORTHO05D006500 2.8e-131 473.0 457 61.1
Psat5g287560 Pisum sativum HOM05D005278 ORTHO05D006500 4.8e-131 472.2 467 60.4
Lsat_1_v5_gn_9_24160 Lactuca sativa HOM05D005278 ORTHO05D006500 2.4e-130 469.9 478 60.5
Medtr2g097780 Medicago truncatula HOM05D005278 ORTHO05D006500 1.5e-129 467.2 450 62.0
BcaC04g19820 Brassica carinata HOM05D005278 ORTHO05D006500 2.0e-129 466.8 447 64.2
PSO384G3155 Papaver somniferum HOM05D005278 ORTHO05D006500 5.9e-129 465.3 450 63.3
COL.COLO4_18589 Corchorus olitorius HOM05D005278 ORTHO05D006500 2.9e-128 463.0 451 63.9
Phvul.L008343 Phaseolus vulgaris HOM05D005278 ORTHO05D006500 5.0e-128 462.2 451 61.4
PSO339G3476 Papaver somniferum HOM05D005278 ORTHO05D006500 4.2e-127 459.1 450 62.7
Nn2g13505 Nelumbo nucifera HOM05D005278 ORTHO05D006500 5.5e-127 458.8 450 64.4
Eucgr.B02303 Eucalyptus grandis HOM05D005278 ORTHO05D006500 3.6e-126 456.1 452 62.6
AL8G35480 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 2.3e-125 453.4 447 60.9
MELO3C025886.2 Cucumis melo HOM05D005278 ORTHO05D006500 8.8e-125 451.4 449 61.0
MBI05_g02648_MAGBIO Magnolia biondii HOM05D005278 ORTHO05D006500 2.0e-124 450.3 412 63.8
Haze_24189 Corylus avellana HOM05D005278 ORTHO05D006500 2.5e-124 449.9 702 46.3
CsaV3_6G016570 Cucumis sativus L. HOM05D005278 ORTHO05D006500 8.2e-123 444.9 438 61.4
CsaV3_7G010040 Cucumis sativus L. HOM05D005278 ORTHO05D006500 8.2e-123 444.9 438 61.4
FAN17G1485 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.4e-119 434.1 390 65.6
Glyma.13G339200 Glycine max HOM05D005278 ORTHO05D006500 3.2e-119 433.0 451 59.4
AT5G59210 Arabidopsis thaliana HOM05D005278 ORTHO05D006500 1.1e-116 424.5 447 58.8
TPR.G6835 Trifolium pratense HOM05D005278 ORTHO05D006500 6.3e-115 418.7 424 60.8
Thhalv10013620m.g Eutrema salsugineum HOM05D005278 ORTHO05D006500 7.0e-114 415.2 449 59.5
Sp6g20780 Schrenkiella parvula HOM05D005278 ORTHO05D006500 1.9e-111 407.1 449 58.6
FAN28G2746 Fragaria x ananassa HOM05D005278 ORTHO05D006500 7.7e-105 385.2 327 69.1
Os03g0268100 Oryza sativa ssp. japonica HOM05D005278 ORTHO05D006500 1.7e-104 384.0 466 51.9
Atru.chr3.4014 Acer truncatum HOM05D005278 ORTHO05D006500 9.4e-103 378.3 399 61.4
FvH4_2g37740 Fragaria vesca HOM05D005278 ORTHO05D006500 2.5e-95 353.6 326 65.6
Zm00001eb397870 Zea mays HOM05D005278 ORTHO05D006500 1.2e-94 351.3 465 50.1
Aa31LG1G11980 Aethionema arabicum HOM05D005278 ORTHO05D006500 8.0e-94 348.6 391 55.0
unitig_52.g16817 Utricularia gibba HOM05D005278 ORTHO05D006500 3.0e-93 346.7 448 51.1
CDE04G2524 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 5.2e-93 345.9 437 51.9
ATR0559G139 Amborella trichopoda HOM05D005278 ORTHO05D006500 6.8e-93 345.5 375 56.3
SGA_v2.0_scaffold183G39886 Striga asiatica HOM05D005278 ORTHO05D006500 5.4e-90 335.9 468 50.0
FAN27G2862 Fragaria x ananassa HOM05D005278 ORTHO05D006500 9.1e-90 335.1 402 53.2
CDE07G0843 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 1.1e-87 328.2 431 50.3
SEGI_23562 Sequoiadendron giganteum HOM05D005278 ORTHO05D006500 4.3e-87 326.2 460 47.0
HPP92_018172 Vanilla planifolia HOM05D001260 ORTHO05D002424 5.6e-87 325.9 419 51.3
HPP92_018158 Vanilla planifolia HOM05D005278 ORTHO05D006500 1.3e-80 304.7 353 54.1
RcHm_v2.0_Chr5g0066821 Rosa chinensis HOM05D005278 ORTHO05D006500 1.2e-78 298.1 281 63.7
Sc12g0001220 Simmondsia chinensis HOM05D005278 ORTHO05D006500 3.2e-74 283.5 273 64.1
AL48U10090 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 2.1e-65 254.2 225 67.1
Lalb_Chr14g0372041 Lupinus albus HOM05D005278 ORTHO05D006500 1.7e-64 251.1 244 61.1
Hma1.2p1_0274F.1_g110500 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 2.6e-60 237.3 205 67.8
C02p12810 Brassica napus HOM05D005278 ORTHO05D006500 3.4e-60 236.9 349 48.7
BcaC03g14039 Brassica carinata HOM05D005278 ORTHO05D006500 7.6e-60 235.7 380 47.6
BolC2t07376H Brassica oleracea HOM05D005278 ORTHO05D006500 7.8e-57 225.7 271 55.7
MD03G1084900 Malus domestica HOM05D005278 ORTHO05D006500 5.1e-56 223.0 249 57.4
Lalb_Chr14g0372031 Lupinus albus HOM05D005278 ORTHO05D006500 1.3e-48 198.4 190 60.5
FAN11G3766 Fragaria x ananassa HOM05D005278 ORTHO05D006500 6.6e-48 196.1 325 46.8
Pp3c1_10500 Physcomitrium patens HOM05D005278 ORTHO05D006500 3.6e-46 190.3 380 36.3
Mapoly0044s0102 Marchantia polymorpha HOM05D005278 ORTHO05D006500 6.2e-46 189.5 367 40.3
SMO361G0431 Selaginella moellendorffii HOM05D005278 ORTHO05D006500 8.1e-46 189.1 456 35.7
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 1.4e-42 178.3 152 67.1
Sc12g0001210 Simmondsia chinensis HOM05D005278 ORTHO05D006500 5.4e-42 176.4 127 76.4
FvH4_3g06680 Fragaria vesca HOM05D005278 ORTHO05D006500 2.7e-41 174.1 178 59.6
Zm00001eb011990 Zea mays HOM05D005278 ORTHO05D006500 1.1e-39 168.7 276 42.8
CBR_g23966 Chara braunii HOM05D005278 ORTHO05D006500 4.3e-39 166.8 460 33.7
FAN11G1104 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.3e-38 165.2 200 54.5
SHI05905 Sapria himalayana HOM05D005278 ORTHO05D006500 8.7e-32 142.5 239 46.0
RcHm_v2.0_Chr7g0185271 Rosa chinensis HOM05D005278 ORTHO05D006500 1.5e-31 141.7 157 56.1
Manes.04G070850 Manihot esculenta HOM05D005278 ORTHO05D006500 8.4e-27 125.9 147 54.4
RcHm_v2.0_Chr5g0066831 Rosa chinensis HOM05D005278 ORTHO05D006500 1.3e-24 118.6 92 67.4
FvH4_3g06640 Fragaria vesca HOM05D005278 ORTHO05D006500 3.0e-24 117.5 140 51.4
FAN25G0674 Fragaria x ananassa HOM05D005278 ORTHO05D006500 5.1e-24 116.7 175 48.0
Rhsim13G0076500 Rhododendron simsii HOM05D005278 ORTHO05D006500 8.5e-19 99.4 62 87.1
RcHm_v2.0_Chr5g0066581 Rosa chinensis HOM05D005278 ORTHO05D006500 3.2e-18 97.4 67 77.6
C02p36410 Brassica napus HOM05D005278 ORTHO05D006500 2.2e-14 84.7 111 51.4
TPR.G20043 Trifolium pratense HOM05D005278 ORTHO05D006500 4.1e-13 80.5 92 58.7
BcaB05g22478 Brassica carinata HOM05D005278 ORTHO05D006500 1.5e-12 78.6 192 38.0
BcaC06g34357 Brassica carinata HOM05D005278 ORTHO05D016744 1.6e-09 68.6 168 36.3


User provided reference genes

Program Settings