Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0148400 Salix brachista HOM05D005166 ORTHO05D006120 0.0e+00 1115.9 900 100.0
Potri.001G244600 Populus trichocarpa HOM05D005166 ORTHO05D006120 3.2e-226 789.3 902 72.8
Potri.009G036900 Populus trichocarpa HOM05D005166 ORTHO05D006120 1.1e-194 684.5 831 71.0
Sabra09G0026100 Salix brachista HOM05D005166 ORTHO05D006120 7.7e-188 661.8 825 67.2
Dinv34287 Davidia involucrata HOM05D005166 ORTHO05D006120 1.5e-114 418.3 844 55.2
Dinv42991 Davidia involucrata HOM05D005166 ORTHO05D006120 2.3e-107 394.4 833 52.9
Dinv43106 Davidia involucrata HOM05D005166 ORTHO05D006120 2.3e-107 394.4 833 52.9
CSS0046995 Camellia sinensis var. sinensis HOM05D005166 ORTHO05D006120 1.9e-106 391.3 833 53.1
Haze_24175 Corylus avellana HOM05D005166 ORTHO05D006120 6.2e-105 386.3 924 53.9
QL01p029224 Quercus lobata HOM05D005166 ORTHO05D006120 1.4e-101 375.2 928 52.4
Atru.chr3.3993_Atru.chr3.3994 Acer truncatum HOM05D005166 ORTHO05D006120 1.9e-101 374.8 882 51.4
Dinv17047 Davidia involucrata HOM05D005166 ORTHO05D006120 7.1e-101 372.9 834 52.4
Haze_24170 Corylus avellana HOM05D005166 ORTHO05D006120 1.5e-98 365.2 924 52.2
Manes.01G169300 Manihot esculenta HOM05D005166 ORTHO05D006120 7.4e-98 362.8 901 51.8
GSVIVG01024906001 Vitis vinifera HOM05D005166 ORTHO05D006120 6.3e-97 359.8 824 52.8
CiPaw.13G089200 Carya illinoinensis HOM05D005166 ORTHO05D006120 2.6e-95 354.4 837 53.4
MD11G1094700 Malus domestica HOM05D005166 ORTHO05D006120 3.4e-95 354.0 934 50.7
Prupe.6G070300 Prunus persica HOM05D005166 ORTHO05D006120 5.1e-91 340.1 854 48.5
Duzib168G0713 Durio zibethinus HOM05D005166 ORTHO05D006120 5.7e-90 336.7 826 53.8
Hma1.2p1_1664F.1_g296420 Hydrangea macrophylla HOM05D005166 ORTHO05D006120 1.4e-88 332.0 820 51.8
RcHm_v2.0_Chr5g0066361 Rosa chinensis HOM05D005166 ORTHO05D006120 2.6e-87 327.8 829 49.7
Nn2g11213 Nelumbo nucifera HOM05D005166 ORTHO05D006120 1.0e-86 325.9 857 47.4
Medtr4g064740 Medicago truncatula HOM05D005166 ORTHO05D006120 2.2e-86 324.7 861 50.4
TAR636G0138 Trochodendron aralioides HOM05D005166 ORTHO05D006120 9.4e-85 319.3 878 47.5
Gohir.A13G226600 Gossypium hirsutum HOM05D005166 ORTHO05D006120 5.1e-83 313.5 786 55.5
Gorai.013G262700 Gossypium raimondii HOM05D005166 ORTHO05D006120 5.1e-83 313.5 786 55.5
FAN25G3327 Fragaria x ananassa HOM05D005166 ORTHO05D006120 6.7e-83 313.2 836 47.8
TAR636G0020 Trochodendron aralioides HOM05D005166 ORTHO05D006120 6.7e-83 313.2 877 47.1
TAR633G1610 Trochodendron aralioides HOM05D005166 ORTHO05D006120 4.4e-82 310.5 892 47.6
Thecc.09G315500 Theobroma cacao HOM05D005166 ORTHO05D006120 1.3e-81 308.9 719 59.5
Gohir.D13G232000 Gossypium hirsutum HOM05D005166 ORTHO05D006120 1.4e-80 305.4 786 55.6
FAN16G3680 Fragaria x ananassa HOM05D005166 ORTHO05D006120 2.6e-79 301.2 829 48.5
Lalb_Chr01g0003471 Lupinus albus HOM05D005166 ORTHO05D006120 4.5e-79 300.4 843 45.4
COL.COLO4_18578 Corchorus olitorius HOM05D005166 ORTHO05D006120 1.3e-78 298.9 842 51.1
FvH4_3g36942 Fragaria vesca HOM05D005166 ORTHO05D006120 1.7e-78 298.5 829 50.5
FAN11G2353 Fragaria x ananassa HOM05D005166 ORTHO05D006120 3.8e-78 297.4 829 51.6
Lalb_Chr19g0137981 Lupinus albus HOM05D005166 ORTHO05D006120 3.6e-76 290.8 804 41.0
FAN21G1054 Fragaria x ananassa HOM05D005166 ORTHO05D006120 6.1e-76 290.0 829 47.2
MD03G1086100 Malus domestica HOM05D005166 ORTHO05D006120 8.0e-76 289.7 834 51.2
Ciclev10030390m.g Citrus clementina HOM05D005166 ORTHO05D006120 1.8e-75 288.5 820 50.2
TPR.G23607 Trifolium pratense HOM05D005166 ORTHO05D006120 3.0e-75 287.7 867 46.8
Lj3g0025501 Lotus japonicus HOM05D005166 ORTHO05D006120 3.3e-74 284.3 807 46.8
Rhsim13G0077000 Rhododendron simsii HOM05D005166 ORTHO05D006120 2.8e-73 281.2 853 47.9
vmacro03027 Vaccinium macrocarpon HOM05D005166 ORTHO05D006120 3.7e-73 280.8 901 45.4
Ca_20616_v3 Cicer arietinum L. HOM05D005166 ORTHO05D006120 4.1e-72 277.3 844 34.8
MBI14_g11598_MAGBIO Magnolia biondii HOM05D005166 ORTHO05D006120 1.7e-70 271.9 901 43.1
Sed0011931 Sechium edule HOM05D005166 ORTHO05D006120 5.0e-70 270.4 283 58.3
Glyma.12G059700 Glycine max HOM05D005166 ORTHO05D006120 6.5e-70 270.0 819 48.5
CDE07G0344 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 5.5e-69 266.9 284 56.7
CsaV3_1G034540 Cucumis sativus L. HOM05D005166 ORTHO05D006120 7.2e-69 266.5 275 58.2
Cc01_g13350 Coffea canephora HOM05D005166 ORTHO05D006120 2.1e-68 265.0 208 68.3
Eucgr.B02307 Eucalyptus grandis HOM05D005166 ORTHO05D006120 1.4e-67 262.3 836 44.9
Psat7g210320 Pisum sativum HOM05D005166 ORTHO05D006120 5.2e-67 260.4 852 47.5
DCAR_005942 Daucus carota HOM05D005166 ORTHO05D006120 6.7e-67 260.0 294 60.5
Lalb_Chr03g0026441 Lupinus albus HOM05D005166 ORTHO05D006120 1.5e-66 258.8 287 55.7
arahy.Tifrunner.gnm1.ann1.SP769B Arachis hypogaea HOM05D005166 ORTHO05D006120 2.2e-65 255.0 845 47.7
Nn2g13459 Nelumbo nucifera HOM05D005166 ORTHO05D006120 1.4e-64 252.3 892 40.1
PSO339G5769 Papaver somniferum HOM05D005166 ORTHO05D006120 1.8e-64 251.9 858 45.2
AL4G23770 Arabidopsis lyrata HOM05D005166 ORTHO05D006120 4.1e-64 250.8 304 54.3
arahy.Tifrunner.gnm1.ann1.L8ZXQA Arachis hypogaea HOM05D005166 ORTHO05D006120 4.1e-64 250.8 806 48.4
MSTRG.21221 Avicennia marina HOM05D005166 ORTHO05D006120 4.1e-64 250.8 220 67.3
Cpa.g.sc81.97 Carica papaya HOM05D005166 ORTHO05D006120 7.0e-64 250.0 215 66.0
THA.LOC104800686 Tarenaya hassleriana HOM05D005166 ORTHO05D006120 7.0e-64 250.0 209 67.0
Aa31LG5G7110 Aethionema arabicum HOM05D005166 ORTHO05D006120 9.1e-64 249.6 209 65.6
VMungo1127G2033 Vigna mungo HOM05D005166 ORTHO05D006120 2.0e-63 248.4 208 66.3
Hund04921 Selenicereus undatus HOM05D005166 ORTHO05D006120 1.0e-62 246.1 140 87.9
SHI05908 Sapria himalayana HOM05D005166 ORTHO05D006120 2.9e-62 244.6 320 48.8
Migut.D00877 Erythranthe guttata HOM05D005166 ORTHO05D006120 3.8e-62 244.2 143 85.3
Sp4g12020 Schrenkiella parvula HOM05D005166 ORTHO05D006120 3.8e-62 244.2 213 64.3
Thhalv10016250m.g Eutrema salsugineum HOM05D005166 ORTHO05D006120 5.0e-62 243.8 210 63.8
AT2G29210 Arabidopsis thaliana HOM05D005166 ORTHO05D006120 8.5e-62 243.0 209 64.1
Aqoxy2G02310 Aquilegia oxysepala HOM05D005166 ORTHO05D006120 1.5e-61 242.3 881 45.6
ECA247G0723 Erigeron canadensis HOM05D005166 ORTHO05D006120 2.1e-60 238.4 287 54.0
Carub.0004s1023 Capsella rubella HOM05D005166 ORTHO05D006120 6.1e-60 236.9 134 88.1
Lsat_1_v5_gn_9_24820 Lactuca sativa HOM05D005166 ORTHO05D006120 6.1e-60 236.9 203 70.0
Nitab4.5_0001999g0010 Nicotiana tabacum HOM05D005166 ORTHO05D006120 6.1e-60 236.9 863 41.8
HanXRQChr08g0237471 Helianthus annuus HOM05D005166 ORTHO05D006120 1.8e-59 235.3 303 51.8
BolC4t23701H Brassica oleracea HOM05D005166 ORTHO05D006120 3.0e-59 234.6 300 51.3
Peaxi162Scf00676g00220 Petunia axillaris HOM05D005166 ORTHO05D006120 3.0e-59 234.6 866 44.5
HPP92_012608 Vanilla planifolia HOM05D005166 ORTHO05D006120 3.0e-59 234.6 142 81.7
Zm00001eb012100 Zea mays HOM05D005166 ORTHO05D006120 3.0e-59 234.6 143 82.5
EL10Ac7g16070 Beta vulgaris HOM05D005166 ORTHO05D006120 4.0e-59 234.2 209 68.4
CAN.G3.46 Capsicum annuum HOM05D005166 ORTHO05D006120 4.0e-59 234.2 862 43.3
Ah.08g220070 Amaranthus hybridus HOM05D005166 ORTHO05D006120 8.8e-59 233.0 281 54.8
HanXRQChr01g0001871 Helianthus annuus HOM05D005166 ORTHO05D006120 8.8e-59 233.0 213 61.5
Sopen09g013470 Solanum pennellii HOM05D005166 ORTHO05D006120 8.8e-59 233.0 868 44.2
C04p21810 Brassica napus HOM05D005166 ORTHO05D006120 2.6e-58 231.5 300 51.3
AUR62020041 Chenopodium quinoa HOM05D005166 ORTHO05D006120 4.4e-58 230.7 135 86.7
Glyma.11G136000 Glycine max HOM05D005166 ORTHO05D006120 4.4e-58 230.7 827 46.4
AagrBONN_evm.TU.Sc2ySwM_117.3439 Anthoceros agrestis HOM05D005166 ORTHO05D006120 5.7e-58 230.3 143 79.7
Os03g0270200 Oryza sativa ssp. japonica HOM05D005166 ORTHO05D006120 5.7e-58 230.3 143 81.1
Pp3c3_30240 Physcomitrium patens HOM05D005166 ORTHO05D006120 9.8e-58 229.6 289 52.2
Pp3c3_30241 Physcomitrium patens HOM05D005166 ORTHO05D006120 9.8e-58 229.6 289 52.2
SEGI_12829 Sequoiadendron giganteum HOM05D005166 ORTHO05D006120 1.7e-57 228.8 287 54.0
BcaB02g10233 Brassica carinata HOM05D005166 ORTHO05D006120 8.3e-57 226.5 214 61.7
A05p16120 Brassica napus HOM05D005166 ORTHO05D006120 1.1e-56 226.1 211 62.6
HanXRQChr08g0237371 Helianthus annuus HOM05D005166 ORTHO05D006120 1.1e-56 226.1 316 49.7
Phvul.011G061700 Phaseolus vulgaris HOM05D005166 ORTHO05D006120 1.4e-56 225.7 881 46.7
Pp3c10_18390 Physcomitrium patens HOM05D005166 ORTHO05D006120 1.8e-56 225.3 294 49.3
BraA05t20522Z Brassica rapa HOM05D005166 ORTHO05D006120 4.1e-56 224.2 299 51.8
PGSC0003DMG400027986 Solanum tuberosum HOM05D005166 ORTHO05D006120 9.1e-56 223.0 876 40.2
PGR102G2168 Punica granatum HOM05D005166 ORTHO05D006120 2.7e-55 221.5 852 47.1
Nitab4.5_0005248g0020 Nicotiana tabacum HOM05D005166 ORTHO05D006120 3.8e-54 217.6 868 39.9
SHI31247 Sapria himalayana HOM05D005166 ORTHO05D006120 2.5e-53 214.9 221 57.5
SGA_v2.0_scaffold111G31544 Striga asiatica HOM05D005166 ORTHO05D006120 4.2e-53 214.2 838 42.0
Mapoly0063s0002 Marchantia polymorpha HOM05D005166 ORTHO05D006120 2.1e-52 211.8 131 79.4
ATR0559G187 Amborella trichopoda HOM05D005166 ORTHO05D006120 8.9e-51 206.5 904 36.6
Solyc09g030390.3 Solanum lycopersicum HOM05D005166 ORTHO05D006120 1.2e-50 206.1 863 44.8
AUR62001736 Chenopodium quinoa HOM05D005166 ORTHO05D006120 2.0e-50 205.3 840 51.7
Actinidia33768 Actinidia chinensis HOM05D005166 ORTHO05D006120 2.6e-50 204.9 776 46.3
CDE06G0141 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 9.8e-50 203.0 113 88.5
Sc12g0001240 Simmondsia chinensis HOM05D005166 ORTHO05D006120 2.8e-49 201.4 257 51.8
Sed0000001 Sechium edule HOM05D005166 ORTHO05D006120 6.3e-49 200.3 247 51.4
CBR_g50691 Chara braunii HOM05D005166 ORTHO05D006120 1.8e-48 198.7 151 68.9
SMO144G0189 Selaginella moellendorffii HOM05D005166 ORTHO05D006120 7.8e-47 193.4 134 72.4
SHI33547 Sapria himalayana HOM05D005166 ORTHO05D006120 1.5e-42 179.1 195 54.9
unitig_746.g26715 Utricularia gibba HOM05D005166 ORTHO05D006120 1.7e-41 175.6 187 51.9
SHI32778 Sapria himalayana HOM05D005166 ORTHO05D006120 2.1e-36 158.7 134 67.2
BcaB05g22029 Brassica carinata HOM05D005166 ORTHO05D006120 2.9e-33 148.3 99 75.8
SHI25075 Sapria himalayana HOM05D005166 ORTHO05D006120 2.7e-31 141.7 107 69.2
SHI07724 Sapria himalayana HOM05D005166 ORTHO05D006120 6.6e-30 137.1 159 50.9
Cre16.g678050 Chlamydomonas reinhardtii HOM05D005166 ORTHO05D006120 1.4e-24 119.4 128 52.3
MCO11G283 Micromonas commoda HOM05D005166 ORTHO05D006120 5.1e-22 110.9 117 50.4
Cpa.g.sc81.96 Carica papaya HOM05D005166 ORTHO05D006120 1.8e-19 102.4 342 34.5
Zm00001eb397830 Zea mays HOM05D005166 ORTHO05D006120 7.8e-15 87.0 66 69.7
Zm00001eb222410 Zea mays HOM05D005166 ORTHO05D006120 3.3e-13 81.6 57 70.2
Zm00001eb284680 Zea mays HOM05D005166 ORTHO05D006120 4.7e-12 77.8 62 69.4
HanXRQChr08g0237461 Helianthus annuus HOM05D005166 ORTHO05D006120 2.2e-09 68.9 50 68.0
PRCOL_00003490 Prasinoderma coloniale HOM05D005166 ORTHO05D006120 2.9e-09 68.6 121 36.4
RcHm_v2.0_Chr1g0354421 Rosa chinensis HOM05D005166 ORTHO05D006120 3.9e-06 58.2 53 58.5
RcHm_v2.0_Chr1g0367371 Rosa chinensis HOM05D005166 ORTHO05D006120 3.9e-06 58.2 53 58.5


User provided reference genes

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