Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0145900 Salix brachista HOM05D005444 ORTHO05D006773 7.8e-208 726.9 360 100.0
Potri.001G241400 Populus trichocarpa HOM05D005444 ORTHO05D006773 2.5e-145 519.2 270 94.8
Potri.009G032300 Populus trichocarpa HOM05D005444 ORTHO05D006773 6.5e-130 468.0 270 87.8
Sabra09G0022900 Salix brachista HOM05D005444 ORTHO05D006773 7.7e-123 444.5 270 84.4
Cfa011517 Carpinus fangiana HOM05D005444 ORTHO05D006773 7.8e-107 391.3 273 75.1
Haze_24114 Corylus avellana HOM05D005444 ORTHO05D006773 1.7e-106 390.2 273 74.7
Manes.02G131500 Manihot esculenta HOM05D005444 ORTHO05D006773 1.7e-106 390.2 277 76.2
CANSAT54G1668 Cannabis sativa HOM05D005444 ORTHO05D006773 5.8e-102 375.2 256 74.6
GSVIVG01024939001 Vitis vinifera HOM05D005444 ORTHO05D006773 1.6e-99 367.1 275 72.0
Ciclev10028946m.g Citrus clementina HOM05D005444 ORTHO05D006773 4.6e-99 365.5 282 68.1
Atru.chr3.3946 Acer truncatum HOM05D005444 ORTHO05D006773 1.0e-98 364.4 268 69.4
Actinidia34411 Actinidia chinensis HOM05D005444 ORTHO05D006773 1.1e-97 360.9 267 71.5
Dinv04178 Davidia involucrata HOM05D005444 ORTHO05D006773 3.3e-97 359.4 263 71.5
CSS0026048 Camellia sinensis var. sinensis HOM05D005444 ORTHO05D006773 2.8e-96 356.3 272 69.5
QL01p031522 Quercus lobata HOM05D005444 ORTHO05D006773 8.1e-96 354.8 280 68.2
vmacro14541 Vaccinium macrocarpon HOM05D005444 ORTHO05D006773 1.1e-95 354.4 271 68.6
Rhsim01G0229400 Rhododendron simsii HOM05D005444 ORTHO05D006773 1.2e-94 350.9 267 68.9
FAN21G3395 Fragaria x ananassa HOM05D005444 ORTHO05D006773 1.5e-94 350.5 268 67.2
FvH4_3g36480 Fragaria vesca HOM05D005444 ORTHO05D006773 2.0e-94 350.1 268 67.2
Eucgr.B02353 Eucalyptus grandis HOM05D005444 ORTHO05D006773 2.6e-94 349.7 218 78.0
Gorai.001G111300 Gossypium raimondii HOM05D005444 ORTHO05D006773 9.8e-94 347.8 230 73.9
ECA236G0569 Erigeron canadensis HOM05D005444 ORTHO05D006773 1.3e-93 347.4 270 66.3
SalBow3G1488 Salvia bowleyana HOM05D005444 ORTHO05D006773 1.3e-93 347.4 283 62.9
Phvul.011G063700 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 2.2e-93 346.7 213 76.1
Gohir.D07G103400 Gossypium hirsutum HOM05D005444 ORTHO05D006773 3.7e-93 345.9 230 73.9
Glyma.12G062600 Glycine max HOM05D005444 ORTHO05D006773 8.3e-93 344.7 213 74.6
Gohir.A07G098900 Gossypium hirsutum HOM05D005444 ORTHO05D006773 3.2e-92 342.8 230 73.9
Lj3g0017515 Lotus japonicus HOM05D005444 ORTHO05D006773 3.2e-92 342.8 265 64.5
Lsat_1_v5_gn_8_73500 Lactuca sativa HOM05D005444 ORTHO05D006773 5.4e-92 342.0 269 64.7
Lj1A150T42 Lonicera japonica HOM05D005444 ORTHO05D006773 1.2e-91 340.9 261 68.2
Cc01_g13010 Coffea canephora HOM05D005444 ORTHO05D006773 1.6e-91 340.5 276 63.8
Peaxi162Scf00774g00121 Petunia axillaris HOM05D005444 ORTHO05D006773 2.7e-91 339.7 273 67.8
VMungo1127G0766 Vigna mungo HOM05D005444 ORTHO05D006773 3.5e-91 339.3 213 74.6
Glyma.15G037500 Glycine max HOM05D005444 ORTHO05D006773 6.0e-91 338.6 217 72.8
MD03G1090200 Malus domestica HOM05D005444 ORTHO05D006773 7.8e-91 338.2 212 75.9
Nitab4.5_0000463g0210 Nicotiana tabacum HOM05D005444 ORTHO05D006773 7.8e-91 338.2 273 67.8
Sc21g0005860 Simmondsia chinensis HOM05D005444 ORTHO05D006773 7.8e-91 338.2 212 75.9
Glyma.13G336800 Glycine max HOM05D005444 ORTHO05D006773 1.0e-90 337.8 249 66.7
COL.COLO4_18527 Corchorus olitorius HOM05D005444 ORTHO05D006773 1.3e-90 337.4 226 73.5
HanXRQChr05g0135061 Helianthus annuus HOM05D005444 ORTHO05D006773 1.7e-90 337.0 265 65.3
TPR.G34263 Trifolium pratense HOM05D005444 ORTHO05D006773 1.7e-90 337.0 213 74.6
FAN16G3284 Fragaria x ananassa HOM05D005444 ORTHO05D006773 2.3e-90 336.7 305 59.7
Medtr2g097230 Medicago truncatula HOM05D005444 ORTHO05D006773 8.6e-90 334.7 213 74.6
TWI79G0937 Tripterygium wilfordii HOM05D005444 ORTHO05D006773 1.1e-89 334.3 240 73.3
RcHm_v2.0_Chr5g0065341 Rosa chinensis HOM05D005444 ORTHO05D006773 1.5e-89 334.0 268 66.4
TAR633G2200 Trochodendron aralioides HOM05D005444 ORTHO05D006773 3.3e-89 332.8 282 64.9
CAN.G394.63 Capsicum annuum HOM05D005444 ORTHO05D006773 4.3e-89 332.4 273 65.6
MD11G1099800 Malus domestica HOM05D005444 ORTHO05D006773 7.3e-89 331.6 272 64.7
Sed0025445 Sechium edule HOM05D005444 ORTHO05D006773 9.5e-89 331.3 212 73.6
arahy.Tifrunner.gnm1.ann1.XH3YCC Arachis hypogaea HOM05D005444 ORTHO05D006773 1.6e-88 330.5 269 63.6
Lalb_Chr01g0003631 Lupinus albus HOM05D005444 ORTHO05D006773 1.6e-88 330.5 258 64.7
Phvul.L006243 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 2.1e-88 330.1 255 63.5
arahy.Tifrunner.gnm1.ann1.3F7RX4 Arachis hypogaea HOM05D005444 ORTHO05D006773 8.1e-88 328.2 269 63.2
EL10Ac7g16033 Beta vulgaris HOM05D005444 ORTHO05D006773 1.4e-87 327.4 213 72.8
Sopen06g032680 Solanum pennellii HOM05D005444 ORTHO05D006773 3.1e-87 326.2 274 66.1
THA.LOC104810774 Tarenaya hassleriana HOM05D005444 ORTHO05D006773 5.2e-87 325.5 272 62.9
Ca_01319_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 6.8e-87 325.1 211 73.0
Nitab4.5_0001326g0170 Nicotiana tabacum HOM05D005444 ORTHO05D006773 6.8e-87 325.1 298 62.4
Solyc06g076250.4 Solanum lycopersicum HOM05D005444 ORTHO05D006773 6.8e-87 325.1 258 68.2
Hund04946 Selenicereus undatus HOM05D005444 ORTHO05D006773 8.9e-87 324.7 262 64.9
AUR62009560 Chenopodium quinoa HOM05D005444 ORTHO05D006773 2.6e-86 323.2 253 63.2
FAN11G0832 Fragaria x ananassa HOM05D005444 ORTHO05D006773 2.6e-86 323.2 315 57.1
CiPaw.13G092700 Carya illinoinensis HOM05D005444 ORTHO05D006773 7.6e-86 321.6 242 69.8
HanXRQChr06g0178811 Helianthus annuus HOM05D005444 ORTHO05D006773 9.9e-86 321.2 269 61.7
CsaV3_1G034350 Cucumis sativus L. HOM05D005444 ORTHO05D006773 3.7e-85 319.3 292 58.2
Migut.D02083 Erythranthe guttata HOM05D005444 ORTHO05D006773 3.7e-85 319.3 269 64.7
arahy.Tifrunner.gnm1.ann1.9NI65Y Arachis hypogaea HOM05D005444 ORTHO05D006773 4.9e-85 318.9 217 71.0
FAN25G3546 Fragaria x ananassa HOM05D005444 ORTHO05D006773 1.1e-84 317.8 282 59.9
PGSC0003DMG401030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 1.1e-84 317.8 258 67.1
arahy.Tifrunner.gnm1.ann1.T6ZDSA Arachis hypogaea HOM05D005444 ORTHO05D006773 2.4e-84 316.6 217 70.5
Sp6g21080 Schrenkiella parvula HOM05D005444 ORTHO05D006773 3.2e-84 316.2 291 59.5
Aa31sc23G420 Aethionema arabicum HOM05D005444 ORTHO05D006773 5.4e-84 315.5 269 61.3
PSO063G3487 Papaver somniferum HOM05D005444 ORTHO05D006773 1.2e-83 314.3 259 64.1
VMungo1080G1107 Vigna mungo HOM05D000758 ORTHO05D002867 1.2e-83 314.3 218 69.3
AT5G59400 Arabidopsis thaliana HOM05D005444 ORTHO05D006773 1.6e-83 313.9 273 60.8
BraA10t43744Z Brassica rapa HOM05D005444 ORTHO05D006773 2.7e-83 313.2 279 60.2
A10p16600 Brassica napus HOM05D005444 ORTHO05D006773 7.8e-83 311.6 279 59.9
PSO339G5422 Papaver somniferum HOM05D005444 ORTHO05D006773 1.0e-82 311.2 260 63.5
BcaC04g19778 Brassica carinata HOM05D005444 ORTHO05D006773 1.7e-82 310.5 279 59.9
C09p51810 Brassica napus HOM05D005444 ORTHO05D006773 1.7e-82 310.5 279 59.9
BolC9t58042H Brassica oleracea HOM05D005444 ORTHO05D006773 1.7e-82 310.5 279 59.9
Oeu017397.1 Olea europaea HOM05D005444 ORTHO05D006773 5.1e-82 308.9 247 64.0
AL8G35870 Arabidopsis lyrata HOM05D005444 ORTHO05D006773 6.6e-82 308.5 272 60.3
BcaB08g36261 Brassica carinata HOM05D005444 ORTHO05D006773 6.6e-82 308.5 278 59.4
ATR0559G091 Amborella trichopoda HOM05D005444 ORTHO05D006773 4.3e-81 305.8 231 65.4
Carub.0008s2007 Capsella rubella HOM05D005444 ORTHO05D006773 7.3e-81 305.1 271 60.9
ClCG03G001420 Citrullus lanatus HOM05D005444 ORTHO05D006773 2.8e-80 303.1 328 51.8
Actinidia23933 Actinidia chinensis HOM05D000001 ORTHO05D000003 3.6e-80 302.8 284 59.9
Ca_19148_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 1.4e-79 300.8 200 73.0
PGR102G1676 Punica granatum HOM05D005444 ORTHO05D006773 5.2e-79 298.9 252 66.3
Dinv17019 Davidia involucrata HOM05D005444 ORTHO05D006773 1.2e-78 297.7 275 60.7
Dinv42967 Davidia involucrata HOM05D005444 ORTHO05D006773 1.2e-78 297.7 275 60.7
Dinv43132 Davidia involucrata HOM05D005444 ORTHO05D006773 1.2e-78 297.7 275 60.7
Thecc.09G320000 Theobroma cacao HOM05D005444 ORTHO05D006773 5.8e-78 295.4 240 66.7
Prupe.6G074400 Prunus persica HOM05D005444 ORTHO05D006773 4.9e-77 292.4 228 69.7
Duzib168G1171 Durio zibethinus HOM05D005444 ORTHO05D006773 2.4e-76 290.0 179 78.2
Cpa.g.sc81.131 Carica papaya HOM05D005444 ORTHO05D006773 1.3e-74 284.3 269 59.9
CDE04G2637 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 5.6e-73 278.9 235 59.6
MELO3C020623.2 Cucumis melo HOM05D005444 ORTHO05D006773 3.6e-72 276.2 232 62.9
CDE09G1090 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 2.0e-70 270.4 278 54.0
Oeu002422.1 Olea europaea HOM05D005444 ORTHO05D006773 8.4e-69 265.0 398 41.7
SEGI_38540 Sequoiadendron giganteum HOM05D005444 ORTHO05D006773 1.1e-68 264.6 212 61.3
Thhalv10014435m.g Eutrema salsugineum HOM05D005444 ORTHO05D006773 5.4e-68 262.3 263 56.3
Hund18899 Selenicereus undatus HOM05D005444 ORTHO05D006773 7.1e-68 261.9 183 70.5
AUR62001772 Chenopodium quinoa HOM05D005444 ORTHO05D006773 4.6e-67 259.2 281 51.2
Psat5g286680 Pisum sativum HOM05D005444 ORTHO05D006773 3.0e-66 256.5 213 63.8
Mapoly0050s0097 Marchantia polymorpha HOM05D005444 ORTHO05D006773 5.5e-60 235.7 252 48.8
HPP92_009462 Vanilla planifolia HOM05D005444 ORTHO05D006773 7.4e-57 225.3 194 57.7
AagrBONN_evm.TU.Sc2ySwM_368.577 Anthoceros agrestis HOM05D005444 ORTHO05D006773 8.1e-56 221.9 224 51.3
TPR.G1035 Trifolium pratense HOM05D005444 ORTHO05D006773 2.2e-53 213.8 166 64.5
Pp3c1_24530 Physcomitrium patens HOM05D005444 ORTHO05D006773 4.2e-52 209.5 210 51.9
Pp3c14_5400 Physcomitrium patens HOM05D005444 ORTHO05D006773 2.4e-47 193.7 230 45.7
SGA_v2.0_scaffold203G41537 Striga asiatica HOM05D005444 ORTHO05D006773 5.3e-47 192.6 145 67.6
Duzib170G0057 Durio zibethinus HOM05D005444 ORTHO05D006773 2.6e-46 190.3 135 69.6
PGSC0003DMG402030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 8.7e-42 175.3 138 63.8
CARHR285770 Cardamine hirsuta HOM05D005444 ORTHO05D006773 3.3e-41 173.3 147 59.2
TPR.G3768 Trifolium pratense HOM05D005444 ORTHO05D006773 3.2e-36 156.8 131 63.4
SGA_v2.0_scaffold203G41535 Striga asiatica HOM05D005444 ORTHO05D006773 1.6e-35 154.5 136 64.7
Aqoxy1G00926 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 2.7e-35 153.7 124 62.9
Aqoxy1G00927 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 8.8e-34 148.7 96 76.0
MCO07G449 Micromonas commoda HOM05D005444 ORTHO05D006773 4.3e-33 146.4 214 40.2
Ah.15g097630 Amaranthus hybridus HOM05D005444 ORTHO05D006773 3.1e-31 140.2 85 78.8
Zm00001eb355820 Zea mays HOM05D005444 ORTHO05D006773 1.5e-30 137.9 131 51.1
DCAR_005353 Daucus carota HOM05D005444 ORTHO05D006773 2.6e-30 137.1 92 68.5
unitig_747.g22036 Utricularia gibba HOM05D005444 ORTHO05D006773 7.7e-30 135.6 75 80.0
unitig_747.g22037 Utricularia gibba HOM05D005444 ORTHO05D006773 3.8e-29 133.3 115 57.4
HanXRQChr06g0167871 Helianthus annuus HOM05D000219 ORTHO05D006773 5.1e-26 122.9 92 67.4
HanXRQChr10g0291051 Helianthus annuus HOM05D005444 ORTHO05D006773 1.1e-25 121.7 88 70.5
HanXRQChr10g0291061 Helianthus annuus HOM05D005444 ORTHO05D006773 1.1e-25 121.7 88 70.5
Os05g0110800 Oryza sativa ssp. japonica HOM05D005444 ORTHO05D006773 2.6e-25 120.6 67 85.1
Medtr4g064030 Medicago truncatula HOM05D005444 ORTHO05D006773 4.4e-25 119.8 135 50.4
Nn2g13370 Nelumbo nucifera HOM05D005444 ORTHO05D006773 2.4e-23 114.0 60 83.3
TPR.G27554 Trifolium pratense HOM05D005444 ORTHO05D006773 7.0e-23 112.5 74 70.3
TAR636G2897 Trochodendron aralioides HOM05D005444 ORTHO05D006773 9.7e-17 92.0 80 62.5
COL.COLO4_35627 Corchorus olitorius HOM05D005444 ORTHO05D001950 3.7e-16 90.1 105 49.5
AUR62031662 Chenopodium quinoa HOM05D001050 ORTHO05D001270 7.0e-15 85.9 80 57.5
Psat5g007960 Pisum sativum HOM05D005444 ORTHO05D006773 7.0e-15 85.9 72 61.1
TPR.G376 Trifolium pratense HOM05D025391 ORTHO05D030167 9.1e-15 85.5 41 90.2
Ah.15g097620 Amaranthus hybridus HOM05D005444 ORTHO05D006773 2.7e-14 84.0 44 84.1
Glyma.11G138967 Glycine max HOM05D005444 ORTHO05D006773 3.5e-14 83.6 72 58.3
Psat4g229040 Pisum sativum HOM05D005444 ORTHO05D006773 1.5e-12 78.2 42 83.3
BcaB01g04587 Brassica carinata HOM05D000021 ORTHO05D000010 5.2e-10 69.7 76 51.3
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 8.8e-10 68.9 191 28.8
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 3.7e-08 63.5 211 25.1
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 1.2e-06 58.5 191 29.3
Phvul.005G077000 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 4.5e-06 56.6 39 59.0
TPR.G27777 Trifolium pratense HOM05D005444 ORTHO05D006773 5.9e-06 56.2 34 70.6


User provided reference genes

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