Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 7.8e-53 210.3 114 100.0
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 2.0e-32 142.5 90 85.6
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.4e-25 119.8 90 75.6
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 3.4e-24 115.2 89 71.9
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 3.3e-19 98.6 90 58.9
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 1.8e-17 92.8 77 68.8
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 2.4e-17 92.4 87 65.5
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 3.1e-17 92.0 90 57.8
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 3.1e-17 92.0 90 57.8
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 3.1e-17 92.0 87 63.2
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 4.0e-17 91.7 84 59.5
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.2e-16 90.1 87 62.1
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.2e-16 90.1 88 61.4
Carub.0001s0489 Capsella rubella HOM05D004722 ORTHO05D005453 1.5e-16 89.7 83 59.0
AT1G05575 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 2.0e-16 89.4 86 57.0
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 4.5e-16 88.2 78 61.5
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 4.5e-16 88.2 87 60.9
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 5.8e-16 87.8 74 68.9
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 5.8e-16 87.8 81 61.7
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 5.8e-16 87.8 87 60.9
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 7.6e-16 87.4 87 57.5
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 9.9e-16 87.0 84 65.5
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 9.9e-16 87.0 85 61.2
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 1.3e-15 86.7 87 62.1
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 1.3e-15 86.7 89 53.9
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 1.3e-15 86.7 69 69.6
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 1.7e-15 86.3 90 61.1
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 2.2e-15 85.9 85 57.6
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 2.2e-15 85.9 85 57.6
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 2.2e-15 85.9 85 57.6
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 2.2e-15 85.9 85 57.6
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 2.2e-15 85.9 85 57.6
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 2.2e-15 85.9 85 60.0
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 2.2e-15 85.9 95 57.9
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 2.9e-15 85.5 89 57.3
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 3.8e-15 85.1 74 62.2
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 6.4e-15 84.3 79 58.2
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 8.4e-15 84.0 115 50.4
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 1.1e-14 83.6 74 60.8
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 1.4e-14 83.2 81 63.0
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 1.9e-14 82.8 90 56.7
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 1.9e-14 82.8 76 64.5
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 1.9e-14 82.8 84 64.3
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 1.9e-14 82.8 74 63.5
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 2.4e-14 82.4 76 65.8
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 2.4e-14 82.4 67 73.1
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 2.4e-14 82.4 69 65.2
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 3.2e-14 82.0 63 69.8
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 3.2e-14 82.0 73 64.4
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 4.2e-14 81.6 89 53.9
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 4.2e-14 81.6 73 64.4
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 5.4e-14 81.3 89 57.3
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 5.4e-14 81.3 73 63.0
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 9.3e-14 80.5 82 56.1
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 9.3e-14 80.5 82 56.1
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 1.2e-13 80.1 68 67.6
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 1.6e-13 79.7 71 64.8
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 1.6e-13 79.7 89 56.2
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 1.6e-13 79.7 75 61.3
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 1.6e-13 79.7 79 58.2
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 1.6e-13 79.7 68 66.2
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 1.6e-13 79.7 68 66.2
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 2.1e-13 79.3 73 65.8
AT2G31945 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 2.7e-13 79.0 74 56.8
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 3.5e-13 78.6 75 60.0
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 4.6e-13 78.2 71 63.4
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 4.6e-13 78.2 67 61.2
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 6.0e-13 77.8 74 55.4
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 6.0e-13 77.8 68 63.2
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 7.9e-13 77.4 83 59.0
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 7.9e-13 77.4 72 62.5
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 7.9e-13 77.4 75 65.3
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 7.9e-13 77.4 75 65.3
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 1.0e-12 77.0 76 63.2
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 1.3e-12 76.6 71 60.6
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 1.3e-12 76.6 72 62.5
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 1.8e-12 76.3 85 60.0
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 1.8e-12 76.3 78 60.3
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 3.0e-12 75.5 67 59.7
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 3.0e-12 75.5 72 58.3
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 3.0e-12 75.5 73 63.0
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 3.9e-12 75.1 84 58.3
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 3.9e-12 75.1 76 57.9
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 5.1e-12 74.7 83 51.8
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 5.1e-12 74.7 75 57.3
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 5.1e-12 74.7 74 62.2
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 5.1e-12 74.7 90 54.4
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 6.7e-12 74.3 74 58.1
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 8.7e-12 73.9 89 56.2
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 8.7e-12 73.9 82 62.2
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 1.1e-11 73.6 68 63.2
SalBow4G0755 Salvia bowleyana HOM05D004722 ORTHO05D005453 1.1e-11 73.6 73 60.3
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.1e-11 73.6 76 56.6
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 1.9e-11 72.8 72 59.7
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 1.9e-11 72.8 66 69.7
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.9e-11 72.8 76 57.9
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 2.5e-11 72.4 73 61.6
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 2.5e-11 72.4 73 58.9
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 3.3e-11 72.0 74 58.1
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 4.3e-11 71.6 74 56.8
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 5.6e-11 71.2 73 57.5
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 9.6e-11 70.5 74 55.4
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.3e-10 70.1 77 58.4
Oeu032785.1 Olea europaea HOM05D004722 ORTHO05D005453 1.3e-10 70.1 73 57.5
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 2.1e-10 69.3 80 57.5
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 2.8e-10 68.9 71 59.2
SalBow4G0008 Salvia bowleyana HOM05D004722 ORTHO05D005453 3.6e-10 68.6 65 63.1
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 4.8e-10 68.2 77 57.1
FvH4_3g44500 Fragaria vesca HOM05D004722 ORTHO05D005453 8.1e-10 67.4 79 51.9
FAN11G3093 Fragaria x ananassa HOM05D004722 ORTHO05D005453 8.1e-10 67.4 79 51.9
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 8.1e-10 67.4 78 52.6
RcHm_v2.0_Chr5g0081201 Rosa chinensis HOM05D004722 ORTHO05D005453 8.1e-10 67.4 76 51.3
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 1.1e-09 67.0 81 53.1
Nitab4.5_0009236g0010 Nicotiana tabacum HOM05D004722 ORTHO05D005453 1.4e-09 66.6 67 65.7
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.8e-09 66.2 72 55.6
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.8e-09 66.2 72 55.6
HanXRQChr01g0021201 Helianthus annuus HOM05D004722 ORTHO05D005453 1.8e-09 66.2 63 57.1
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 2.4e-09 65.9 72 55.6
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 2.4e-09 65.9 74 52.7
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 4.0e-09 65.1 66 59.1
Zm00001eb100710 Zea mays HOM05D004722 ORTHO05D005453 5.3e-09 64.7 75 54.7
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 6.9e-09 64.3 73 53.4
HPP92_023476 Vanilla planifolia HOM05D004722 ORTHO05D005453 6.9e-09 64.3 74 52.7
EL10Ac4g09615 Beta vulgaris HOM05D004722 ORTHO05D005453 9.0e-09 63.9 91 45.1
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 9.0e-09 63.9 74 55.4
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 9.0e-09 63.9 66 59.1
Zm00001eb100700 Zea mays HOM05D004722 ORTHO05D005453 9.0e-09 63.9 75 54.7
Zm00001eb193270 Zea mays HOM05D004722 ORTHO05D005453 1.2e-08 63.5 86 46.5
HPP92_023456 Vanilla planifolia HOM05D004722 ORTHO05D005453 2.0e-08 62.8 74 51.4
Os02g0774200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 2.6e-08 62.4 94 42.6
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 3.4e-08 62.0 76 48.7
MBI19_g17416_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 5.8e-08 61.2 85 48.2
Os09g0446700 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 5.8e-08 61.2 71 54.9
Atru.chr3.2176 Acer truncatum HOM05D004722 ORTHO05D005453 7.6e-08 60.8 53 67.9
DCAR_023306 Daucus carota HOM05D004722 ORTHO05D005453 9.9e-08 60.5 76 46.1
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 9.9e-08 60.5 79 45.6
Atru.chr3.2177 Acer truncatum HOM05D004722 ORTHO05D005453 1.7e-07 59.7 67 58.2
EL10Ac4g09616 Beta vulgaris HOM05D004722 ORTHO05D005453 2.2e-07 59.3 86 39.5
ClCG09G003700 Citrullus lanatus HOM05D004722 ORTHO05D005453 2.2e-07 59.3 65 56.9
Sc06g0004360 Simmondsia chinensis HOM05D004722 ORTHO05D005453 2.2e-07 59.3 70 50.0
Ah.06g190970 Amaranthus hybridus HOM05D004722 ORTHO05D005453 2.9e-07 58.9 90 42.2
Zm00001eb373570 Zea mays HOM05D004722 ORTHO05D005453 2.9e-07 58.9 82 48.8
A10p04340 Brassica napus HOM05D000875 ORTHO05D000684 8.4e-07 57.4 54 57.4
EL10Ac4g09614 Beta vulgaris HOM05D004722 ORTHO05D005453 1.1e-06 57.0 79 40.5
MBI19_g17417_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 1.1e-06 57.0 68 50.0
MD03G1011900 Malus domestica HOM05D004722 ORTHO05D005453 1.1e-06 57.0 56 60.7
MD11G1015000 Malus domestica HOM05D004722 ORTHO05D005453 1.1e-06 57.0 69 52.2
Os06g0207200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 1.1e-06 57.0 88 46.6
Sed0018607 Sechium edule HOM05D004722 ORTHO05D005453 1.1e-06 57.0 73 52.1
ATR0598G063 Amborella trichopoda HOM05D004722 ORTHO05D005453 3.2e-06 55.5 74 50.0
Cpa.g.sc119.96 Carica papaya HOM05D004722 ORTHO05D005453 5.5e-06 54.7 60 53.3
Gohir.A10G182200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 5.5e-06 54.7 74 45.9


User provided reference genes

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