Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 3.0e-125 451.8 224 100.0
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 2.9e-120 435.3 221 96.8
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 1.6e-86 323.2 222 72.5
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 8.9e-85 317.4 228 71.9
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 3.4e-84 315.5 221 72.9
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 4.4e-84 315.1 225 72.0
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 2.9e-83 312.4 223 71.7
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 3.7e-83 312.0 222 69.8
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 4.9e-83 311.6 206 77.2
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 1.8e-82 309.7 223 69.5
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 9.2e-82 307.4 223 68.2
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 3.5e-81 305.4 221 70.1
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 7.8e-81 304.3 222 66.7
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 3.0e-80 302.4 222 68.0
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 3.0e-80 302.4 221 67.4
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 1.9e-79 299.7 226 64.6
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 1.9e-79 299.7 222 66.2
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 2.5e-79 299.3 226 66.8
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 2.5e-79 299.3 222 66.2
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 4.3e-79 298.5 240 66.2
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 9.5e-79 297.4 230 65.2
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 9.5e-79 297.4 222 64.0
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 1.2e-78 297.0 230 65.2
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 8.0e-78 294.3 222 66.2
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 8.0e-78 294.3 222 66.7
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 1.0e-77 293.9 222 64.9
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 1.4e-77 293.5 222 65.3
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 1.8e-77 293.1 222 64.9
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 1.8e-77 293.1 222 64.0
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 1.8e-77 293.1 227 65.6
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 6.8e-77 291.2 225 63.1
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 1.2e-76 290.4 233 62.7
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 3.4e-76 288.9 225 64.0
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 5.8e-76 288.1 224 64.7
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 7.5e-76 287.7 233 63.1
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 2.9e-75 285.8 223 65.9
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 3.7e-75 285.4 222 61.7
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 3.7e-75 285.4 230 63.9
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 4.9e-75 285.0 222 62.2
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 4.9e-75 285.0 220 62.3
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 4.9e-75 285.0 224 63.8
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 6.4e-75 284.6 222 61.3
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 1.9e-74 283.1 227 62.6
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 1.9e-74 283.1 227 62.6
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 2.4e-74 282.7 220 63.2
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 2.4e-74 282.7 222 62.2
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 3.2e-74 282.3 224 63.4
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 4.1e-74 282.0 222 62.6
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 7.0e-74 281.2 220 62.3
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 7.0e-74 281.2 221 64.7
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 9.2e-74 280.8 228 63.6
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 9.2e-74 280.8 222 60.4
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 9.2e-74 280.8 228 63.6
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 1.2e-73 280.4 220 62.3
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 1.6e-73 280.0 223 63.2
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 2.0e-73 279.6 220 62.7
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 2.0e-73 279.6 220 62.7
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 2.0e-73 279.6 222 65.8
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 2.0e-73 279.6 225 63.1
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 2.7e-73 279.3 224 62.5
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 3.5e-73 278.9 227 62.6
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 3.5e-73 278.9 229 62.4
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 4.6e-73 278.5 222 62.2
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 6.0e-73 278.1 243 59.3
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 7.8e-73 277.7 225 62.2
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 1.3e-72 276.9 224 63.8
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 1.7e-72 276.6 222 62.2
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 3.0e-72 275.8 222 64.0
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 3.0e-72 275.8 222 62.2
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 3.0e-72 275.8 223 63.7
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 3.9e-72 275.4 222 62.2
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 3.9e-72 275.4 230 61.7
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 3.9e-72 275.4 230 61.7
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 3.9e-72 275.4 230 61.7
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 5.0e-72 275.0 222 62.2
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 8.6e-72 274.2 223 62.8
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 8.6e-72 274.2 230 60.9
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 1.1e-71 273.9 223 62.8
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 1.1e-71 273.9 222 60.4
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 1.5e-71 273.5 222 61.7
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 2.5e-71 272.7 223 62.8
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 3.3e-71 272.3 222 60.8
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 7.3e-71 271.2 222 60.4
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 7.3e-71 271.2 231 61.0
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 9.5e-71 270.8 221 62.4
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 1.6e-70 270.0 216 62.5
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 2.1e-70 269.6 222 61.3
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 2.8e-70 269.2 222 59.9
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 3.6e-70 268.9 222 59.0
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 2.3e-69 266.2 222 59.5
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 3.1e-69 265.8 222 57.2
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 1.2e-68 263.8 221 59.3
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.6e-68 262.7 223 59.6
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 4.4e-68 261.9 221 60.2
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 4.4e-68 261.9 222 59.0
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 5.8e-68 261.5 222 59.9
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 9.8e-68 260.8 228 59.2
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 9.8e-68 260.8 223 61.4
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 1.7e-67 260.0 216 61.1
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 2.2e-67 259.6 222 59.9
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.9e-67 259.2 222 59.0
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 3.7e-67 258.8 223 58.7
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 3.7e-67 258.8 235 55.7
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 3.7e-67 258.8 229 59.0
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 4.9e-67 258.5 243 54.3
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 8.3e-67 257.7 220 59.1
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 1.1e-66 257.3 223 58.3
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 3.2e-66 255.8 234 57.3
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 4.1e-66 255.4 241 54.8
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 1.6e-65 253.4 220 57.3
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 1.6e-65 253.4 250 51.2
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 3.5e-65 252.3 219 60.7
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 4.6e-65 251.9 225 56.4
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 4.6e-65 251.9 236 57.2
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 6.0e-65 251.5 223 60.1
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 1.3e-64 250.4 277 49.1
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 1.1e-63 247.3 231 55.4
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 2.5e-63 246.1 220 54.5
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 9.5e-63 244.2 271 49.8
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 1.6e-62 243.4 196 61.2
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 2.8e-62 242.7 164 68.9
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 2.8e-62 242.7 216 55.6
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 4.7e-62 241.9 231 55.4
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 5.2e-61 238.4 236 52.5
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 1.2e-60 237.3 252 52.0
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 5.8e-60 235.0 165 69.7
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 7.6e-60 234.6 221 53.4
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 2.4e-58 229.6 157 67.5
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 1.3e-56 223.8 247 47.4
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 1.5e-55 220.3 240 51.7
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 3.3e-55 219.2 132 75.8
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 5.6e-55 218.4 203 54.2
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 9.6e-55 217.6 222 48.6
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.6e-54 216.9 267 48.3
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 6.8e-53 211.5 127 76.4
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 3.8e-51 205.7 129 72.1
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 8.4e-51 204.5 231 51.1
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 1.9e-50 203.4 132 72.0
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 5.4e-50 201.8 178 59.6
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 4.6e-49 198.7 127 72.4
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 1.1e-45 187.6 130 69.2
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 2.6e-44 183.0 137 62.0
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 3.4e-44 182.6 127 65.4
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 3.8e-43 179.1 122 68.0
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 6.4e-43 178.3 124 69.4
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 8.4e-43 177.9 155 52.9
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 8.7e-40 167.9 236 45.3
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 4.2e-34 149.1 131 59.5
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 3.9e-32 142.5 86 75.6
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 1.1e-31 141.0 84 71.4
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 4.6e-25 119.0 234 32.9
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 2.3e-24 116.7 114 54.4
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 5.7e-23 112.1 71 74.6
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 9.0e-21 104.8 123 39.8
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 1.6e-17 94.0 79 58.2
Solyc09g005580.4 Solanum lycopersicum HOM05D004149 ORTHO05D005028 3.6e-17 92.8 104 48.1
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 4.6e-17 92.4 178 35.4
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 1.1e-13 81.3 116 36.2
MCO12G475 Micromonas commoda HOM05D004149 ORTHO05D005028 4.1e-13 79.3 125 32.8
CBR_g34707 Chara braunii HOM05D004149 ORTHO05D005028 6.9e-13 78.6 117 33.3
GSVIVG01032328001 Vitis vinifera HOM05D004149 ORTHO05D005028 7.7e-12 75.1 97 47.4
GSVIVG01000345001 Vitis vinifera HOM05D000200 ORTHO05D011629 1.3e-11 74.3 89 50.6
GSVIVG01030787001 Vitis vinifera HOM05D004149 ORTHO05D005028 1.3e-11 74.3 103 47.6
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 3.8e-11 72.8 80 48.8
MSTRG.19005 Avicennia marina HOM05D004149 ORTHO05D005028 1.4e-10 70.9 94 45.7
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 4.2e-10 69.3 73 46.6
BcaB06g29604 Brassica carinata HOM05D004149 ORTHO05D039425 8.2e-06 55.1 56 48.2


User provided reference genes

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