Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0093100 Salix brachista HOM05D004499 ORTHO05D004928 5.2e-176 620.9 313 100.0
Potri.016G086900 Populus trichocarpa HOM05D004499 ORTHO05D004928 2.3e-139 499.2 319 83.4
Potri.006G130500 Populus trichocarpa HOM05D004499 ORTHO05D004928 5.0e-126 454.9 313 77.6
Sabra06G0102500 Salix brachista HOM05D004499 ORTHO05D004928 3.3e-122 442.2 315 75.2
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 1.0e-91 340.9 311 62.4
CiPaw.09G179000 Carya illinoinensis HOM05D004499 ORTHO05D004928 6.8e-75 285.0 327 54.1
Prupe.6G240400 Prunus persica HOM05D004499 ORTHO05D004928 2.2e-73 280.0 330 53.6
Haze_20629 Corylus avellana HOM05D004499 ORTHO05D004928 7.8e-71 271.6 326 53.1
QL07p045089 Quercus lobata HOM05D004499 ORTHO05D004928 1.1e-69 267.7 338 52.4
Cfa017521 Carpinus fangiana HOM05D004499 ORTHO05D004928 1.5e-69 267.3 324 52.8
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 1.2e-66 257.7 319 50.2
MD04G1102600 Malus domestica HOM05D004499 ORTHO05D004928 1.7e-65 253.8 334 51.2
Thecc.05G055800 Theobroma cacao HOM05D004499 ORTHO05D004928 1.7e-65 253.8 340 48.8
Atru.chr8.1895 Acer truncatum HOM05D004499 ORTHO05D004928 6.0e-63 245.4 315 51.7
Cpa.g.sc174.12 Carica papaya HOM05D004499 ORTHO05D004928 1.0e-62 244.6 319 49.8
Gorai.009G419500 Gossypium raimondii HOM05D004499 ORTHO05D004928 3.9e-62 242.7 332 48.5
Gohir.A04G075800 Gossypium hirsutum HOM05D004499 ORTHO05D004928 2.1e-60 236.9 332 47.9
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 3.6e-60 236.1 341 48.7
Gorai.006G168200 Gossypium raimondii HOM05D004499 ORTHO05D004928 1.8e-59 233.8 316 48.7
Gohir.A09G151400 Gossypium hirsutum HOM05D004499 ORTHO05D004928 3.1e-59 233.0 316 49.1
CANSAT80G2505 Cannabis sativa HOM05D004499 ORTHO05D004928 5.2e-59 232.3 350 44.6
Duzib093G0117 Durio zibethinus HOM05D004499 ORTHO05D004928 8.9e-59 231.5 325 46.8
Dinv37265 Davidia involucrata HOM05D004499 ORTHO05D004928 1.2e-58 231.1 316 49.4
Gohir.D09G147000 Gossypium hirsutum HOM05D004499 ORTHO05D004928 3.4e-58 229.6 316 48.1
CiPaw.10G136800 Carya illinoinensis HOM05D004499 ORTHO05D004928 2.2e-57 226.9 329 46.8
TWI77G0862 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 2.4e-56 223.4 328 48.5
RcHm_v2.0_Chr3g0469011 Rosa chinensis HOM05D004499 ORTHO05D004928 4.2e-56 222.6 338 47.3
FAN05G3415 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.6e-55 220.7 335 47.2
ClCG10G020450 Citrullus lanatus HOM05D004499 ORTHO05D004928 2.7e-55 219.9 342 46.5
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 3.5e-55 219.5 322 43.8
FAN02G0924 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.3e-54 217.6 333 47.7
Sed0022446 Sechium edule HOM05D004499 ORTHO05D004928 1.3e-54 217.6 335 46.6
FAN09G3365 Fragaria x ananassa HOM05D004499 ORTHO05D004928 2.5e-53 213.4 338 45.3
Manes.08G004127 Manihot esculenta HOM05D004499 ORTHO05D004928 2.5e-53 213.4 209 59.8
Manes.08G004131 Manihot esculenta HOM05D004499 ORTHO05D004928 2.5e-53 213.4 209 59.8
FvH4_6g15510 Fragaria vesca HOM05D004499 ORTHO05D004928 5.6e-53 212.2 338 45.3
FAN14G2800 Fragaria x ananassa HOM05D004499 ORTHO05D004928 5.6e-53 212.2 338 45.3
Manes.08G004109 Manihot esculenta HOM05D004499 ORTHO05D004928 2.8e-52 209.9 209 59.3
Manes.08G004117 Manihot esculenta HOM05D004499 ORTHO05D004928 2.8e-52 209.9 209 59.3
Manes.08G004114 Manihot esculenta HOM05D004499 ORTHO05D004928 3.6e-52 209.5 209 59.3
Manes.08G004120 Manihot esculenta HOM05D004499 ORTHO05D004928 3.6e-52 209.5 209 59.3
Lalb_Chr25g0289231 Lupinus albus HOM05D004499 ORTHO05D004928 6.2e-52 208.8 340 47.6
Manes.08G004126 Manihot esculenta HOM05D004499 ORTHO05D004928 1.1e-51 208.0 209 59.3
Sed0006356 Sechium edule HOM05D004499 ORTHO05D004928 1.5e-50 204.1 340 43.8
Nn2g13028 Nelumbo nucifera HOM05D004499 ORTHO05D004928 4.4e-50 202.6 335 43.6
CSS0026303 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 1.3e-49 201.1 316 43.7
CSS0015121 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 1.7e-49 200.7 331 42.6
CSS0037383 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 3.8e-49 199.5 316 43.4
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 8.4e-49 198.4 323 45.5
MELO3C009326.2 Cucumis melo HOM05D004499 ORTHO05D004928 1.4e-48 197.6 343 43.7
Hma1.2p1_0111F.1_g054000 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 1.9e-48 197.2 307 46.3
THA.LOC104806496 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 1.9e-48 197.2 326 43.9
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 1.6e-47 194.1 313 42.8
Lalb_Chr01g0018981 Lupinus albus HOM05D004499 ORTHO05D004928 3.5e-47 193.0 343 44.6
Duzib106G0876 Durio zibethinus HOM05D004499 ORTHO05D004928 4.6e-47 192.6 319 41.7
CsaV3_3G035670 Cucumis sativus L. HOM05D004499 ORTHO05D004928 1.0e-46 191.4 350 43.1
Lj1g0000961 Lotus japonicus HOM05D004499 ORTHO05D004928 3.3e-45 186.4 319 43.6
Aqoxy4G03228 Aquilegia oxysepala HOM05D004499 ORTHO05D004928 5.6e-45 185.7 331 41.4
Glyma.19G179400 Glycine max HOM05D004499 ORTHO05D004928 2.8e-44 183.3 320 43.4
Medtr7g100830 Medicago truncatula HOM05D004499 ORTHO05D004928 8.1e-44 181.8 326 43.6
Manes.12G048251 Manihot esculenta HOM05D004499 ORTHO05D004928 2.0e-42 177.2 186 58.1
Glyma.03G178700 Glycine max HOM05D004499 ORTHO05D004928 2.6e-42 176.8 329 42.6
Manes.08G004906 Manihot esculenta HOM05D004499 ORTHO05D004928 2.6e-42 176.8 186 58.1
MD12G1122400 Malus domestica HOM05D004499 ORTHO05D004928 3.4e-42 176.4 336 39.9
Manes.05G197300 Manihot esculenta HOM05D004499 ORTHO05D004928 2.9e-41 173.3 247 49.0
CARHR131610 Cardamine hirsuta HOM05D004499 ORTHO05D004928 3.8e-41 172.9 335 41.8
Rhsim04G0149000 Rhododendron simsii HOM05D004499 ORTHO05D004928 1.1e-40 171.4 344 37.8
VMungo1383G2757 Vigna mungo HOM05D004499 ORTHO05D004928 2.4e-40 170.2 318 41.8
DCAR_014968 Daucus carota HOM05D004499 ORTHO05D004928 3.2e-40 169.9 301 44.2
Manes.05G197001 Manihot esculenta HOM05D004499 ORTHO05D004928 4.2e-40 169.5 186 57.0
Phvul.007G164800 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 4.2e-40 169.5 323 40.6
Phvul.001G175400 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 1.2e-39 167.9 309 43.4
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 1.6e-39 167.5 368 39.7
Glyma.10G050500 Glycine max HOM05D004499 ORTHO05D004928 4.6e-39 166.0 326 41.7
Glyma.13G138000 Glycine max HOM05D004499 ORTHO05D004928 6.0e-39 165.6 334 41.6
Psat3g044200 Pisum sativum HOM05D004499 ORTHO05D004928 1.1e-37 161.4 320 40.0
Lj5g0026303 Lotus japonicus HOM05D004499 ORTHO05D004928 1.9e-37 160.6 348 40.2
Gohir.D04G114901 Gossypium hirsutum HOM05D004499 ORTHO05D004928 2.5e-37 160.2 164 58.5
Lsat_1_v5_gn_6_30120 Lactuca sativa HOM05D004499 ORTHO05D004928 2.5e-37 160.2 326 40.5
MSTRG.19143 Avicennia marina HOM05D004499 ORTHO05D004928 4.3e-37 159.5 339 37.8
Ca_08832_v3 Cicer arietinum L. HOM05D004499 ORTHO05D004928 4.8e-36 156.0 345 38.0
Cc06_g03680 Coffea canephora HOM05D004499 ORTHO05D004928 1.4e-35 154.5 357 36.7
Thhalv10016942m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 3.1e-35 153.3 340 38.8
Sc20g0005110 Simmondsia chinensis HOM05D004499 ORTHO05D004928 9.0e-35 151.8 338 37.6
Sp4g19420 Schrenkiella parvula HOM05D004499 ORTHO05D004928 1.2e-34 151.4 344 36.9
THA.LOC104826978 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 3.4e-34 149.8 319 42.6
Dinv35728 Davidia involucrata HOM05D004499 ORTHO05D004928 7.6e-34 148.7 191 48.2
Medtr1g066750 Medicago truncatula HOM05D004499 ORTHO05D004928 1.0e-33 148.3 323 39.6
Sp6g39600 Schrenkiella parvula HOM05D004499 ORTHO05D004928 1.0e-33 148.3 316 41.8
BcaC02g11837 Brassica carinata HOM05D004499 ORTHO05D004928 2.2e-33 147.1 345 36.8
C04p10830 Brassica napus HOM05D004499 ORTHO05D004928 2.9e-33 146.7 345 36.8
Oeu029418.1 Olea europaea HOM05D004499 ORTHO05D004928 8.4e-33 145.2 325 38.5
SalBow3G3210 Salvia bowleyana HOM05D004499 ORTHO05D004928 1.9e-32 144.1 332 39.2
Thhalv10014228m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 4.2e-32 142.9 318 41.5
Lalb_Chr20g0112851 Lupinus albus HOM05D004499 ORTHO05D004928 4.2e-32 142.9 322 39.1
CARHR210240 Cardamine hirsuta HOM05D004499 ORTHO05D004928 9.3e-32 141.7 236 45.8
Aa31LG5G22320 Aethionema arabicum HOM05D004499 ORTHO05D004928 2.1e-31 140.6 322 38.2
THA.LOC104816329 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 2.7e-31 140.2 330 40.3
BraA05t19842Z Brassica rapa HOM05D004499 ORTHO05D004928 3.5e-31 139.8 350 36.0
BolC4t22678H Brassica oleracea HOM05D004499 ORTHO05D004928 4.6e-31 139.4 344 35.8
A05p08740 Brassica napus HOM05D004499 ORTHO05D004928 7.9e-31 138.7 350 36.0
PGSC0003DMG400001742 Solanum tuberosum HOM05D004499 ORTHO05D004928 1.3e-30 137.9 305 37.7
BcaB02g09303 Brassica carinata HOM05D004499 ORTHO05D004928 3.0e-30 136.7 350 36.9
AT2G37100 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 6.7e-30 135.6 330 35.8
MSTRG.26719 Avicennia marina HOM05D004499 ORTHO05D004928 6.7e-30 135.6 323 38.7
Solyc09g007470.2 Solanum lycopersicum HOM05D004499 ORTHO05D004928 6.7e-30 135.6 303 38.3
AL6G12390 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 3.3e-29 133.3 252 43.7
SHI12538 Sapria himalayana HOM05D004499 ORTHO05D004928 4.3e-29 132.9 187 48.1
AL4G33450 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 1.8e-27 127.5 339 36.6
BcaC03g13031 Brassica carinata HOM05D004499 ORTHO05D004928 1.8e-27 127.5 333 36.0
C02p00790 Brassica napus HOM05D004499 ORTHO05D004928 1.8e-27 127.5 333 36.0
BolC2t06077H Brassica oleracea HOM05D004499 ORTHO05D004928 1.8e-27 127.5 333 36.0
Sopen00g013370 Solanum pennellii HOM05D004499 ORTHO05D004928 1.8e-27 127.5 208 45.7
AT5G03110 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 4.0e-27 126.3 270 40.4
Migut.J00423 Erythranthe guttata HOM05D004499 ORTHO05D004928 6.9e-27 125.6 342 35.1
Psat6g070200 Pisum sativum HOM05D004499 ORTHO05D004928 6.9e-27 125.6 305 37.7
BcaB05g21851 Brassica carinata HOM05D004499 ORTHO05D004928 1.2e-26 124.8 342 36.5
AUR62042302 Chenopodium quinoa HOM05D004499 ORTHO05D004928 1.5e-26 124.4 305 37.0
BraA02t04744Z Brassica rapa HOM05D004499 ORTHO05D004928 2.6e-26 123.6 337 35.0
Carub.0006s0191 Capsella rubella HOM05D004499 ORTHO05D004928 2.6e-26 123.6 262 40.8
DCAR_009280 Daucus carota HOM05D004499 ORTHO05D004928 2.6e-26 123.6 306 37.6
ECA233G0353 Erigeron canadensis HOM05D004499 ORTHO05D004928 3.4e-26 123.2 296 35.8
COL.COLO4_27061 Corchorus olitorius HOM05D004499 ORTHO05D004928 4.5e-26 122.9 76 84.2
unitig_26.g9218 Utricularia gibba HOM05D004499 ORTHO05D004928 3.8e-25 119.8 315 34.3
Carub.0004s1899 Capsella rubella HOM05D004499 ORTHO05D004928 8.4e-25 118.6 333 33.3
ClCG04G008860 Citrullus lanatus HOM05D004499 ORTHO05D004928 9.3e-24 115.2 310 34.8
Lsat_1_v5_gn_1_54160 Lactuca sativa HOM05D004499 ORTHO05D004928 1.2e-23 114.8 300 35.7
MELO3C014257.2 Cucumis melo HOM05D004499 ORTHO05D004928 2.1e-23 114.0 322 34.2
Sed0011318 Sechium edule HOM05D004499 ORTHO05D004928 4.6e-23 112.8 203 40.9
Oeu038974.1 Olea europaea HOM05D004499 ORTHO05D004928 2.3e-22 110.5 394 33.0
Actinidia40043 Actinidia chinensis HOM05D004499 ORTHO05D004928 1.1e-21 108.2 317 31.9
SGA_v2.0_scaffold126G33909 Striga asiatica HOM05D004499 ORTHO05D004928 2.5e-21 107.1 305 35.4
HanXRQChr02g0051991 Helianthus annuus HOM05D004499 ORTHO05D004928 3.3e-21 106.7 134 50.0
CsaV3_6G039360 Cucumis sativus L. HOM05D004499 ORTHO05D004928 4.8e-20 102.8 228 37.3
Oeu059988.1 Olea europaea HOM05D004499 ORTHO05D004928 1.1e-19 101.7 427 30.2
Oeu060092.2 Olea europaea HOM05D000784 ORTHO05D004928 1.4e-19 101.3 311 31.2
Ah.15g092180 Amaranthus hybridus HOM05D004499 ORTHO05D004928 1.8e-19 100.9 182 41.8
MSTRG.10304 Avicennia marina HOM05D004499 ORTHO05D004928 1.2e-18 98.2 327 30.3
TPR.G36959 Trifolium pratense HOM05D004499 ORTHO05D004928 1.7e-17 94.4 236 36.0
Sc02g0001920 Simmondsia chinensis HOM05D004499 ORTHO05D004928 2.9e-17 93.6 294 29.6
AUR62040029 Chenopodium quinoa HOM05D004499 ORTHO05D004928 1.4e-16 91.3 291 34.0
Peaxi162Scf00005g04016 Petunia axillaris HOM05D004499 ORTHO05D004928 1.4e-16 91.3 71 67.6
RhsimUnG0115800 Rhododendron simsii HOM05D004499 ORTHO05D004928 1.4e-16 91.3 279 33.7
PSO063G6372 Papaver somniferum HOM05D004499 ORTHO05D004928 9.4e-16 88.6 313 32.3
SGA_v2.0_scaffold94G28675 Striga asiatica HOM05D004499 ORTHO05D004928 9.4e-16 88.6 220 36.8
PSO384G2831 Papaver somniferum HOM05D004499 ORTHO05D004928 2.1e-15 87.4 327 32.4
PSO339G1230 Papaver somniferum HOM05D004499 ORTHO05D004928 4.6e-15 86.3 332 31.6
PSO339G0805 Papaver somniferum HOM05D004499 ORTHO05D004928 1.8e-14 84.3 343 30.6
AUR62044753 Chenopodium quinoa HOM05D004499 ORTHO05D004928 2.3e-14 84.0 270 32.2
Nn4g25115 Nelumbo nucifera HOM05D004499 ORTHO05D004928 5.1e-14 82.8 139 39.6
HPP92_001043 Vanilla planifolia HOM05D004499 ORTHO05D004928 2.2e-12 77.4 218 33.0
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 1.2e-10 71.6 233 31.8
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 1.5e-10 71.2 136 39.7
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 5.0e-09 66.2 133 37.6
EL10Ac7g16510 Beta vulgaris HOM05D007360 ORTHO05D008235 6.5e-09 65.9 168 31.5
Actinidia14388 Actinidia chinensis HOM05D004499 ORTHO05D004928 1.1e-08 65.1 110 44.5
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 1.1e-08 65.1 95 46.3
Actinidia07500 Actinidia chinensis HOM05D004118 ORTHO05D004686 4.2e-08 63.2 275 29.8
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 7.2e-08 62.4 254 30.3
MBI05_g41566_MAGBIO Magnolia biondii HOM05D060308 ORTHO05D004928 7.2e-08 62.4 259 29.7
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 2.7e-07 60.5 340 26.8
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 2.7e-07 60.5 135 34.1
Zm00001eb265390 Zea mays HOM05D004499 ORTHO05D004928 2.7e-07 60.5 228 30.3
Gohir.A08G021600 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.0e-06 58.5 294 28.2
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 2.3e-06 57.4 90 41.1
HPP92_025086 Vanilla planifolia HOM05D004499 ORTHO05D004928 3.0e-06 57.0 246 29.7
Gorai.004G029800 Gossypium raimondii HOM05D004118 ORTHO05D004686 3.9e-06 56.6 294 25.9
Cpa.g.sc80.12 Carica papaya HOM05D004118 ORTHO05D004686 5.1e-06 56.2 90 40.0
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 6.7e-06 55.8 80 43.8
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 6.7e-06 55.8 131 40.5
Gohir.D08G032400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 8.8e-06 55.5 295 27.8


User provided reference genes

Program Settings