Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0089600 Salix brachista HOM05D004061 ORTHO05D004693 1.6e-157 559.3 272 100.0
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 2.5e-105 386.0 272 73.9
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 3.6e-80 302.4 263 59.7
Manes.08G000500 Manihot esculenta HOM05D004061 ORTHO05D004693 5.7e-78 295.0 253 58.5
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 5.5e-73 278.5 238 58.8
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 9.4e-73 277.7 269 55.0
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 2.1e-72 276.6 272 54.4
Lj3A975G70 Lonicera japonica HOM05D004061 ORTHO05D004693 1.0e-71 274.2 260 53.1
arahy.Tifrunner.gnm1.ann1.H9GTJP Arachis hypogaea HOM05D004061 ORTHO05D004693 1.4e-71 273.9 268 53.0
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 2.3e-71 273.1 255 55.3
QL07p045968 Quercus lobata HOM05D004061 ORTHO05D004693 2.3e-71 273.1 262 54.6
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 1.2e-70 270.8 267 51.7
Actinidia05286 Actinidia chinensis HOM05D004061 ORTHO05D004693 2.0e-70 270.0 252 53.2
Cfa017465 Carpinus fangiana HOM05D004061 ORTHO05D004693 7.5e-70 268.1 232 56.9
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 2.2e-69 266.5 256 54.7
arahy.Tifrunner.gnm1.ann1.Y28VT2 Arachis hypogaea HOM05D004061 ORTHO05D004693 2.8e-69 266.2 267 51.7
Medtr7g100150 Medicago truncatula HOM05D004061 ORTHO05D004693 2.8e-69 266.2 267 50.2
Ca_08806_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 3.7e-69 265.8 267 50.2
Lalb_Chr25g0289361 Lupinus albus HOM05D004061 ORTHO05D004693 8.3e-69 264.6 255 51.4
TAR633G1989 Trochodendron aralioides HOM05D004061 ORTHO05D004693 1.8e-68 263.5 260 52.7
Glyma.19G176300 Glycine max HOM05D004061 ORTHO05D004693 2.0e-67 260.0 260 50.0
Sed0004679 Sechium edule HOM05D004061 ORTHO05D004693 3.5e-67 259.2 262 51.9
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 4.5e-67 258.8 265 49.8
Duzib128G0701 Durio zibethinus HOM05D004061 ORTHO05D004693 7.7e-67 258.1 267 51.3
Glyma.13G134900 Glycine max HOM05D004061 ORTHO05D004693 1.3e-66 257.3 256 51.2
Lalb_Chr20g0113041 Lupinus albus HOM05D004061 ORTHO05D004693 2.3e-66 256.5 272 49.6
Migut.L01642 Erythranthe guttata HOM05D004061 ORTHO05D004693 2.9e-66 256.1 259 51.0
Thecc.05G049300 Theobroma cacao HOM05D004061 ORTHO05D004693 2.9e-66 256.1 267 51.7
ClCG04G008650 Citrullus lanatus HOM05D004061 ORTHO05D004693 3.8e-66 255.8 262 52.3
Psat0s1952g0040 Pisum sativum HOM05D004061 ORTHO05D004693 3.8e-66 255.8 267 48.7
Rhsim05G0184700 Rhododendron simsii HOM05D004061 ORTHO05D004693 1.9e-65 253.4 259 51.0
Nitab4.5_0000202g0310 Nicotiana tabacum HOM05D004061 ORTHO05D004693 7.3e-65 251.5 264 48.9
vmacro20095 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 7.3e-65 251.5 240 54.6
MSTRG.19117 Avicennia marina HOM05D004061 ORTHO05D004693 9.5e-65 251.1 264 50.0
Oeu035162.1 Olea europaea HOM05D004061 ORTHO05D004693 9.5e-65 251.1 254 51.2
Glyma.10G046900 Glycine max HOM05D004061 ORTHO05D004693 1.2e-64 250.8 267 49.4
arahy.Tifrunner.gnm1.ann1.9VFE0J Arachis hypogaea HOM05D004061 ORTHO05D004693 2.1e-64 250.0 252 50.0
GSVIVG01025578001 Vitis vinifera HOM05D004061 ORTHO05D004693 2.1e-64 250.0 254 52.0
Phvul.007G161100 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 2.8e-64 249.6 256 50.4
arahy.Tifrunner.gnm1.ann1.6R95LH Arachis hypogaea HOM05D004061 ORTHO05D004693 1.0e-63 247.7 252 49.2
ECA248G1662 Erigeron canadensis HOM05D004061 ORTHO05D004693 1.4e-63 247.3 250 51.6
MBI05_g22082_MAGBIO Magnolia biondii HOM05D004061 ORTHO05D004693 2.3e-63 246.5 255 51.4
Sc20g0004290 Simmondsia chinensis HOM05D004061 ORTHO05D004693 2.3e-63 246.5 258 50.4
Cc06_g03260 Coffea canephora HOM05D004061 ORTHO05D004693 5.2e-63 245.4 255 50.2
Nitab4.5_0000643g0160 Nicotiana tabacum HOM05D004061 ORTHO05D004693 5.2e-63 245.4 248 50.8
Nitab4.5_0006252g0020 Nicotiana tabacum HOM05D004061 ORTHO05D004693 6.8e-63 245.0 253 50.6
Glyma.03G175700 Glycine max HOM05D004061 ORTHO05D004693 1.2e-62 244.2 264 47.3
VMungo1383G1764 Vigna mungo HOM05D004061 ORTHO05D004693 1.2e-62 244.2 256 48.0
Duzib093G0371 Durio zibethinus HOM05D004061 ORTHO05D004693 1.5e-62 243.8 266 49.2
Peaxi162Scf00597g00310 Petunia axillaris HOM05D004061 ORTHO05D004693 2.6e-62 243.0 260 50.8
Lj5g0017469 Lotus japonicus HOM05D004061 ORTHO05D004693 5.7e-62 241.9 262 47.7
PSO699G0012 Papaver somniferum HOM05D004061 ORTHO05D004693 1.3e-61 240.7 256 47.7
Lsat_1_v5_gn_1_54740 Lactuca sativa HOM05D004061 ORTHO05D004693 2.9e-61 239.6 251 49.8
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 4.9e-61 238.8 251 49.0
HanXRQChr13g0392181 Helianthus annuus HOM05D004061 ORTHO05D004693 4.9e-61 238.8 253 50.6
Sed0004085 Sechium edule HOM05D004061 ORTHO05D004693 8.3e-61 238.0 262 48.9
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 3.2e-60 236.1 267 49.4
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 5.4e-60 235.3 267 47.6
Carub.0005s2006 Capsella rubella HOM05D004061 ORTHO05D004693 7.0e-60 235.0 255 48.2
Aa31LG10G9640 Aethionema arabicum HOM05D004061 ORTHO05D004693 1.2e-59 234.2 260 47.3
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 1.6e-59 233.8 255 47.8
Peaxi162Scf00604g00010 Petunia axillaris HOM05D004061 ORTHO05D004693 2.0e-59 233.4 248 47.6
AL5G34410 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 5.9e-59 231.9 255 47.1
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 5.9e-59 231.9 255 47.1
Cpa.g.sc114.23 Carica papaya HOM05D004061 ORTHO05D004693 5.9e-59 231.9 266 46.2
Sopen09g001820 Solanum pennellii HOM05D004061 ORTHO05D004693 5.9e-59 231.9 251 49.4
PSO384G5009 Papaver somniferum HOM05D004061 ORTHO05D004693 1.0e-58 231.1 252 48.4
CAN.G435.5 Capsicum annuum HOM05D004061 ORTHO05D004693 1.3e-58 230.7 240 50.4
Nn2g12823 Nelumbo nucifera HOM05D004061 ORTHO05D004693 1.3e-58 230.7 258 45.0
Solyc09g005960.4 Solanum lycopersicum HOM05D004061 ORTHO05D004693 1.3e-58 230.7 251 48.6
PGR004G1528 Punica granatum HOM05D004061 ORTHO05D004693 1.7e-58 230.3 264 49.2
TWI74G1169 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 2.3e-58 229.9 272 47.1
SHI12648 Sapria himalayana HOM05D004061 ORTHO05D004693 3.9e-58 229.2 239 49.8
TWI77G0888 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 3.9e-58 229.2 259 47.9
Prupe.6G245800 Prunus persica HOM05D004061 ORTHO05D004693 5.0e-58 228.8 268 48.5
Gohir.A01G218200 Gossypium hirsutum HOM05D004061 ORTHO05D004693 8.6e-58 228.0 252 48.0
MD04G1110000 Malus domestica HOM05D004061 ORTHO05D004693 8.6e-58 228.0 260 46.9
unitig_8.g4322 Utricularia gibba HOM05D004061 ORTHO05D004693 8.6e-58 228.0 238 47.5
Lj2C103T21 Lonicera japonica HOM05D004061 ORTHO05D004693 1.5e-57 227.3 237 48.9
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 1.5e-57 227.3 252 47.2
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 3.3e-57 226.1 255 47.1
Gorai.001G248900 Gossypium raimondii HOM05D004061 ORTHO05D004693 3.3e-57 226.1 266 45.5
Phvul.001G172800 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 3.3e-57 226.1 257 46.3
HanXRQChr11g0349611 Helianthus annuus HOM05D004061 ORTHO05D004693 4.3e-57 225.7 253 47.4
BraA07t29848Z Brassica rapa HOM05D004061 ORTHO05D004693 5.6e-57 225.3 255 47.5
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 5.6e-57 225.3 240 49.2
Sopen10g033930 Solanum pennellii HOM05D004061 ORTHO05D004693 9.5e-57 224.6 264 45.5
PGSC0003DMG400011053 Solanum tuberosum HOM05D004061 ORTHO05D004693 1.2e-56 224.2 264 45.1
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 1.6e-56 223.8 255 47.5
Gohir.D01G207100 Gossypium hirsutum HOM05D004061 ORTHO05D004693 1.6e-56 223.8 280 45.4
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 2.1e-56 223.4 259 47.5
Nn2g10562 Nelumbo nucifera HOM05D004061 ORTHO05D004693 2.1e-56 223.4 240 49.6
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 3.6e-56 222.6 255 47.1
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 3.6e-56 222.6 263 45.6
Aqoxy4G03101 Aquilegia oxysepala HOM05D004061 ORTHO05D004693 8.0e-56 221.5 261 46.0
Atru.chr8.2505 Acer truncatum HOM05D004061 ORTHO05D004693 1.8e-55 220.3 263 47.1
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 2.3e-55 219.9 255 47.1
Solyc10g084500.1 Solanum lycopersicum HOM05D004061 ORTHO05D004693 2.3e-55 219.9 264 43.9
ATR0594G174 Amborella trichopoda HOM05D004061 ORTHO05D004693 5.2e-55 218.8 259 44.8
Gorai.002G252200 Gossypium raimondii HOM05D004061 ORTHO05D004693 5.2e-55 218.8 280 44.6
MELO3C003083.2 Cucumis melo HOM05D004061 ORTHO05D004693 8.9e-55 218.0 258 46.5
CsaV3_4G024510 Cucumis sativus L. HOM05D004061 ORTHO05D004693 1.2e-54 217.6 262 46.2
Medtr1g067320 Medicago truncatula HOM05D004061 ORTHO05D004693 2.0e-54 216.9 254 42.9
Gohir.A13G095435 Gossypium hirsutum HOM05D004061 ORTHO05D004693 2.6e-54 216.5 266 45.1
FAN05G3362 Fragaria x ananassa HOM05D004061 ORTHO05D004693 3.4e-54 216.1 256 47.3
Gohir.D13G097300 Gossypium hirsutum HOM05D004061 ORTHO05D004693 3.4e-54 216.1 266 44.7
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 1.7e-53 213.8 257 45.5
CDE07G0262 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 2.2e-53 213.4 250 46.8
FvH4_6g14800 Fragaria vesca HOM05D004061 ORTHO05D004693 2.2e-53 213.4 256 46.5
FAN14G1560 Fragaria x ananassa HOM05D004061 ORTHO05D004693 2.2e-53 213.4 256 46.5
Hund12072 Selenicereus undatus HOM05D004061 ORTHO05D004693 2.2e-53 213.4 252 45.2
VMungo0720G0415 Vigna mungo HOM05D004061 ORTHO05D004693 3.7e-53 212.6 304 39.5
FAN02G3315 Fragaria x ananassa HOM05D004061 ORTHO05D004693 1.1e-52 211.1 256 46.9
RcHm_v2.0_Chr3g0468021 Rosa chinensis HOM05D004061 ORTHO05D004693 1.1e-52 211.1 267 44.6
Ca_11436_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 1.9e-52 210.3 261 43.3
HPP92_006587 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.9e-52 210.3 261 42.1
THA.LOC104806513 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 3.2e-52 209.5 250 44.0
Dinv35674 Davidia involucrata HOM05D004061 ORTHO05D004693 4.1e-52 209.1 222 50.5
SGA_v2.0_scaffold35G14186 Striga asiatica HOM05D004061 ORTHO05D004693 1.7e-50 203.8 236 43.6
Os03g0282800 Oryza sativa ssp. japonica HOM05D004061 ORTHO05D004693 8.6e-50 201.4 256 44.5
Dinv35675 Davidia involucrata HOM05D004061 ORTHO05D004693 1.1e-49 201.1 142 65.5
Psat6g069360 Pisum sativum HOM05D004061 ORTHO05D004693 5.6e-49 198.7 241 41.1
Aa31LG10G9670 Aethionema arabicum HOM05D004061 ORTHO05D004693 9.5e-49 198.0 232 45.3
SalBow4G2839 Salvia bowleyana HOM05D004061 ORTHO05D004693 9.5e-49 198.0 260 40.8
unitig_578.g16044 Utricularia gibba HOM05D004061 ORTHO05D004693 1.1e-47 194.5 238 45.0
C04p39050 Brassica napus HOM05D004061 ORTHO05D004693 3.7e-45 186.0 260 41.2
BolC4t25479H Brassica oleracea HOM05D004061 ORTHO05D004693 3.7e-45 186.0 260 40.8
Oeu049603.1 Olea europaea HOM05D004061 ORTHO05D004693 8.3e-45 184.9 139 59.7
BcaC02g09159 Brassica carinata HOM05D004061 ORTHO05D004693 2.4e-44 183.3 268 39.9
TPR.G7552 Trifolium pratense HOM05D004061 ORTHO05D004693 2.4e-44 183.3 239 39.3
HPP92_015408 Vanilla planifolia HOM05D004061 ORTHO05D004693 5.4e-44 182.2 255 40.4
Dinv37231 Davidia involucrata HOM05D004061 ORTHO05D004693 1.6e-43 180.6 183 52.5
Sp6g39850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 1.0e-42 177.9 257 38.9
Carub.0006s0148 Capsella rubella HOM05D004061 ORTHO05D004693 5.1e-42 175.6 253 37.5
PSO675G5312 Papaver somniferum HOM05D004061 ORTHO05D004693 1.1e-41 174.5 245 40.0
Pp3c2_4500 Physcomitrium patens HOM05D004061 ORTHO05D004693 1.9e-41 173.7 254 39.4
AT5G02720 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 2.1e-40 170.2 257 37.0
THA.LOC104816298 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 2.8e-40 169.9 258 39.9
A10p32990 Brassica napus HOM05D004061 ORTHO05D004693 4.7e-40 169.1 258 36.8
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 6.2e-40 168.7 233 42.5
Ah.08g212360 Amaranthus hybridus HOM05D004061 ORTHO05D004693 1.8e-39 167.2 242 40.9
BraA04t16312Z Brassica rapa HOM05D004061 ORTHO05D004693 5.2e-39 165.6 265 37.0
BolC9t60131H Brassica oleracea HOM05D004061 ORTHO05D004693 2.0e-38 163.7 249 37.8
BraA10t45336Z Brassica rapa HOM05D004061 ORTHO05D004693 2.0e-38 163.7 257 37.0
A04p06100 Brassica napus HOM05D004061 ORTHO05D004693 4.4e-38 162.5 265 36.6
BcaNung03280 Brassica carinata HOM05D004061 ORTHO05D004693 5.8e-38 162.2 249 37.3
AagrBONN_evm.TU.Sc2ySwM_117.2779 Anthoceros agrestis HOM05D004061 ORTHO05D004693 1.7e-37 160.6 253 33.6
Pp3c17_20730 Physcomitrium patens HOM05D004061 ORTHO05D004693 8.4e-37 158.3 258 37.2
Pp3c17_20731 Physcomitrium patens HOM05D004061 ORTHO05D004693 8.4e-37 158.3 258 37.2
Mapoly0179s0007 Marchantia polymorpha HOM05D004061 ORTHO05D004693 1.4e-36 157.5 250 36.0
HPP92_026988 Vanilla planifolia HOM05D004061 ORTHO05D004693 8.1e-32 141.7 231 35.9
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 1.1e-31 141.4 249 35.3
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 4.0e-31 139.4 184 40.8
ATR0594G139 Amborella trichopoda HOM05D004061 ORTHO05D004693 1.5e-30 137.5 189 42.3
COL.COLO4_10313 Corchorus olitorius HOM05D004061 ORTHO05D004693 2.0e-30 137.1 185 40.0
BcaB02g08525 Brassica carinata HOM05D004061 ORTHO05D004693 1.7e-29 134.0 206 40.3
CBR_g49836 Chara braunii HOM05D006172 ORTHO05D004693 2.8e-24 116.7 260 34.6
C09p73960 Brassica napus HOM05D004061 ORTHO05D004693 1.2e-22 111.3 246 30.1
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 3.4e-22 109.8 181 36.5
BcaC06g32007 Brassica carinata HOM05D004061 ORTHO05D004693 4.5e-22 109.4 247 30.8
ATR0594G136 Amborella trichopoda HOM05D004061 ORTHO05D004693 1.9e-20 104.0 174 36.8
AL6G11960 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 2.7e-19 100.1 185 33.5
BcaB02g07781 Brassica carinata HOM05D004061 ORTHO05D004693 1.3e-18 97.8 71 60.6
Thhalv10016063m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 1.8e-18 97.4 184 33.2
vmacro08682 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 1.9e-17 94.0 73 58.9
AUR62041005 Chenopodium quinoa HOM05D004061 ORTHO05D004693 1.5e-14 84.3 65 60.0
Zm00001eb397300 Zea mays HOM05D004061 ORTHO05D004693 2.0e-14 84.0 150 34.7
Zm00001eb012900 Zea mays HOM05D004061 ORTHO05D004693 2.6e-14 83.6 71 54.9
CARHR210670 Cardamine hirsuta HOM05D004061 ORTHO05D004693 6.4e-13 79.0 70 47.1
Zm00001eb131400 Zea mays HOM05D004061 ORTHO05D001113 4.2e-12 76.3 56 62.5
Zm00001eb346430 Zea mays HOM05D004061 ORTHO05D004693 2.7e-11 73.6 56 58.9
Zm00001eb341480 Zea mays HOM05D014943 ORTHO05D019389 5.1e-10 69.3 56 57.1
HPP92_026989 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.9e-09 67.4 78 44.9
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 4.0e-07 59.7 66 50.0
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 1.5e-06 57.8 68 48.5
AUR62028456 Chenopodium quinoa HOM05D004289 ORTHO05D005141 2.6e-06 57.0 66 47.0
Nitab4.5_0000016g0420 Nicotiana tabacum HOM05D004289 ORTHO05D005141 2.6e-06 57.0 79 43.0
Aa31LG1G5340 Aethionema arabicum HOM05D004289 ORTHO05D005141 3.4e-06 56.6 95 35.8
FAN13G3078 Fragaria x ananassa HOM05D004289 ORTHO05D005141 3.4e-06 56.6 77 46.8
QL09p003196 Quercus lobata HOM05D004289 ORTHO05D005141 4.5e-06 56.2 67 46.3
QL09p004791 Quercus lobata HOM05D004289 ORTHO05D005141 4.5e-06 56.2 67 46.3
PGSC0003DMG400025523 Solanum tuberosum HOM05D004289 ORTHO05D005141 5.8e-06 55.8 79 44.3
GSVIVG01025943001 Vitis vinifera HOM05D004289 ORTHO05D005141 5.8e-06 55.8 66 45.5
AUR62042238 Chenopodium quinoa HOM05D004289 ORTHO05D005141 7.6e-06 55.5 67 47.8


User provided reference genes

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