Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0077300 Salix brachista HOM05D003709 ORTHO05D004364 2.2e-90 335.5 158 100.0
Sabra16G0080200 Salix brachista HOM05D003709 ORTHO05D004364 3.5e-51 205.3 99 98.0
Sabra06G0074500 Salix brachista HOM05D003709 ORTHO05D004364 1.0e-50 203.8 99 97.0
Potri.016G074700 Populus trichocarpa HOM05D003709 ORTHO05D004364 1.1e-49 200.3 99 94.9
Glyma.19G196500 Glycine max HOM05D003709 ORTHO05D004364 5.0e-34 148.3 103 69.9
MD05G1051100 Malus domestica HOM05D003709 ORTHO05D004364 5.0e-34 148.3 99 66.7
Manes.08G029100 Manihot esculenta HOM05D003709 ORTHO05D004364 6.6e-34 147.9 101 68.3
RcHm_v2.0_Chr6g0269071 Rosa chinensis HOM05D003709 ORTHO05D004364 8.6e-34 147.5 100 69.0
Duzib093G0911 Durio zibethinus HOM05D003709 ORTHO05D004364 2.5e-33 146.0 100 68.0
Eucgr.A02626 Eucalyptus grandis HOM05D003709 ORTHO05D004364 4.3e-33 145.2 100 66.0
GSVIVG01033901001 Vitis vinifera HOM05D003709 ORTHO05D004364 4.3e-33 145.2 100 67.0
Ciclev10013818m.g Citrus clementina HOM05D003709 ORTHO05D004364 5.6e-33 144.8 102 67.6
Sc20g0006470 Simmondsia chinensis HOM05D003709 ORTHO05D004364 5.6e-33 144.8 102 65.7
COL.COLO4_29662 Corchorus olitorius HOM05D003709 ORTHO05D004364 7.3e-33 144.4 102 67.6
FAN27G1255 Fragaria x ananassa HOM05D003709 ORTHO05D004364 9.5e-33 144.1 103 68.0
Lalb_Chr20g0111541 Lupinus albus HOM05D003709 ORTHO05D004364 9.5e-33 144.1 102 66.7
FvH4_2g10910 Fragaria vesca HOM05D003709 ORTHO05D004364 1.2e-32 143.7 100 68.0
FAN20G0151 Fragaria x ananassa HOM05D003709 ORTHO05D004364 1.2e-32 143.7 100 68.0
Lalb_Chr25g0288201 Lupinus albus HOM05D003709 ORTHO05D004364 1.6e-32 143.3 99 63.6
Gohir.A09G141700 Gossypium hirsutum HOM05D003709 ORTHO05D004364 2.1e-32 142.9 100 65.0
Nn6g34801 Nelumbo nucifera HOM05D003709 ORTHO05D004364 2.1e-32 142.9 102 68.6
FAN15G3210 Fragaria x ananassa HOM05D003709 ORTHO05D004364 2.8e-32 142.5 100 67.0
Phvul.001G193000 Phaseolus vulgaris HOM05D003709 ORTHO05D004364 2.8e-32 142.5 99 65.7
QL07p038048 Quercus lobata HOM05D003709 ORTHO05D004364 2.8e-32 142.5 103 64.1
TWI77G0334 Tripterygium wilfordii HOM05D003709 ORTHO05D004364 4.7e-32 141.7 100 69.0
MD10G1058500 Malus domestica HOM05D003709 ORTHO05D004364 6.1e-32 141.4 99 66.7
Medtr7g105350 Medicago truncatula HOM05D003709 ORTHO05D004364 6.1e-32 141.4 102 65.7
Prupe.8G077900 Prunus persica HOM05D003709 ORTHO05D004364 6.1e-32 141.4 99 63.6
Ciclev10012932m.g Citrus clementina HOM05D003709 ORTHO05D004364 8.0e-32 141.0 102 66.7
PGR004G2656 Punica granatum HOM05D003709 ORTHO05D004364 8.0e-32 141.0 100 64.0
Cpa.g.c29173.2 Carica papaya HOM05D003709 ORTHO05D004364 1.0e-31 140.6 102 67.6
ClCG03G000710 Citrullus lanatus HOM05D003709 ORTHO05D004364 1.0e-31 140.6 99 64.6
FAN24G0281 Fragaria x ananassa HOM05D003709 ORTHO05D004364 1.0e-31 140.6 100 67.0
Gohir.D09G133000 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.0e-31 140.6 103 64.1
Gorai.006G152500 Gossypium raimondii HOM05D003709 ORTHO05D004364 1.0e-31 140.6 103 64.1
Gohir.D11G326500 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.4e-31 140.2 101 65.3
THA.LOC104803461 Tarenaya hassleriana HOM05D003709 ORTHO05D004364 1.4e-31 140.2 101 67.3
THA.LOC104826817 Tarenaya hassleriana HOM05D003709 ORTHO05D004364 1.4e-31 140.2 101 67.3
Dinv31727 Davidia involucrata HOM05D003709 ORTHO05D004364 1.8e-31 139.8 101 65.3
Thhalv10014881m.g Eutrema salsugineum HOM05D003709 ORTHO05D004364 1.8e-31 139.8 99 65.7
Psat3g030960 Pisum sativum HOM05D003709 ORTHO05D004364 1.8e-31 139.8 99 64.6
Rhsim03G0069600 Rhododendron simsii HOM05D003709 ORTHO05D004364 2.3e-31 139.4 106 58.5
EL10Ac7g16841 Beta vulgaris HOM05D003709 ORTHO05D004364 3.0e-31 139.0 99 62.6
EL10Ac7g16842 Beta vulgaris HOM05D003709 ORTHO05D004364 3.0e-31 139.0 99 62.6
CDE04G0652 Ceratophyllum demersum HOM05D003709 ORTHO05D004364 3.0e-31 139.0 100 61.0
Glyma.03G198800 Glycine max HOM05D003709 ORTHO05D004364 5.2e-31 138.3 103 65.0
Gorai.007G357100 Gossypium raimondii HOM05D003709 ORTHO05D004364 5.2e-31 138.3 100 65.0
SGA_v2.0_scaffold13G06687 Striga asiatica HOM05D003709 ORTHO05D004364 5.2e-31 138.3 100 62.0
VMungo1383G1751 Vigna mungo HOM05D003709 ORTHO05D004364 5.2e-31 138.3 99 65.7
Ca_09030_v3 Cicer arietinum L. HOM05D003709 ORTHO05D004364 6.8e-31 137.9 102 64.7
MELO3C009499.2 Cucumis melo HOM05D003709 ORTHO05D004364 6.8e-31 137.9 99 60.6
Cc06_g06250 Coffea canephora HOM05D003709 ORTHO05D004364 1.2e-30 137.1 103 63.1
Lj2g0024912 Lotus japonicus HOM05D003709 ORTHO05D004364 1.2e-30 137.1 102 62.7
Zm00001eb266720 Zea mays HOM05D003709 ORTHO05D004364 2.0e-30 136.3 109 61.5
MSTRG.5871 Avicennia marina HOM05D003709 ORTHO05D004364 2.6e-30 136.0 100 62.0
Thecc.05G096700 Theobroma cacao HOM05D003709 ORTHO05D004364 2.6e-30 136.0 100 64.0
Aqoxy4G02712 Aquilegia oxysepala HOM05D003709 ORTHO05D004364 4.4e-30 135.2 99 65.7
CANSAT64G1889 Cannabis sativa HOM05D003709 ORTHO05D004364 4.4e-30 135.2 100 64.0
Os05g0112750 Oryza sativa ssp. japonica HOM05D003709 ORTHO05D004364 5.7e-30 134.8 99 66.7
Sed0021250 Sechium edule HOM05D003709 ORTHO05D004364 5.7e-30 134.8 99 61.6
arahy.Tifrunner.gnm1.ann1.K65CIQ Arachis hypogaea HOM05D003709 ORTHO05D004364 7.5e-30 134.4 102 65.7
DCAR_020733 Daucus carota HOM05D003709 ORTHO05D004364 7.5e-30 134.4 103 61.2
Sp6g36640 Schrenkiella parvula HOM05D003709 ORTHO05D004364 7.5e-30 134.4 99 64.6
AL6G16240 Arabidopsis lyrata HOM05D003709 ORTHO05D004364 9.8e-30 134.0 99 63.6
BcaB01g05734 Brassica carinata HOM05D003709 ORTHO05D004364 9.8e-30 134.0 99 64.6
A03p02630 Brassica napus HOM05D003709 ORTHO05D004364 9.8e-30 134.0 99 64.6
BraA03t09624Z Brassica rapa HOM05D003709 ORTHO05D004364 9.8e-30 134.0 99 64.6
PSO357G0160 Papaver somniferum HOM05D003709 ORTHO05D004364 9.8e-30 134.0 100 61.0
Peaxi162Scf00096g00098 Petunia axillaris HOM05D003709 ORTHO05D004364 9.8e-30 134.0 100 64.0
PGSC0003DMG400028247 Solanum tuberosum HOM05D003709 ORTHO05D004364 9.8e-30 134.0 100 64.0
BcaC06g32330 Brassica carinata HOM05D003709 ORTHO05D004364 1.3e-29 133.7 99 63.6
BcaC06g32333 Brassica carinata HOM05D003709 ORTHO05D004364 1.3e-29 133.7 99 63.6
A10p30240 Brassica napus HOM05D003709 ORTHO05D004364 1.3e-29 133.7 99 63.6
C09p70650 Brassica napus HOM05D003709 ORTHO05D004364 1.3e-29 133.7 99 63.6
BolC9t59821H Brassica oleracea HOM05D003709 ORTHO05D004364 1.3e-29 133.7 99 63.6
BraA10t45062Z Brassica rapa HOM05D003709 ORTHO05D004364 1.3e-29 133.7 99 63.6
Lsat_1_v5_gn_9_14520 Lactuca sativa HOM05D003709 ORTHO05D004364 1.3e-29 133.7 101 62.4
CARHR206940 Cardamine hirsuta HOM05D003709 ORTHO05D004364 1.7e-29 133.3 99 63.6
CiPaw.10G014600 Carya illinoinensis HOM05D003709 ORTHO05D004364 1.7e-29 133.3 100 63.0
Gorai.002G197000 Gossypium raimondii HOM05D003709 ORTHO05D004364 1.7e-29 133.3 105 59.0
Hma1.2p1_1724F.1_g299425 Hydrangea macrophylla HOM05D003709 ORTHO05D004364 1.7e-29 133.3 103 64.1
Nitab4.5_0001801g0070 Nicotiana tabacum HOM05D003709 ORTHO05D004364 1.7e-29 133.3 100 63.0
Actinidia27230 Actinidia chinensis HOM05D003709 ORTHO05D004364 2.2e-29 132.9 104 59.6
arahy.Tifrunner.gnm1.ann1.VRIY4R Arachis hypogaea HOM05D003709 ORTHO05D004364 2.2e-29 132.9 102 64.7
BcaB01g05985 Brassica carinata HOM05D003709 ORTHO05D004364 2.2e-29 132.9 100 63.0
Carub.0006s0511 Capsella rubella HOM05D003709 ORTHO05D004364 2.2e-29 132.9 99 63.6
Sopen10g032700 Solanum pennellii HOM05D003709 ORTHO05D004364 2.2e-29 132.9 100 63.0
CSS0033506 Camellia sinensis var. sinensis HOM05D003709 ORTHO05D004364 2.9e-29 132.5 100 61.0
ECA247G0210 Erigeron canadensis HOM05D003709 ORTHO05D004364 2.9e-29 132.5 100 62.0
Gohir.1Z049623 Gossypium hirsutum HOM05D003709 ORTHO05D004364 2.9e-29 132.5 76 75.0
CSS0019397 Camellia sinensis var. sinensis HOM05D003709 ORTHO05D004364 3.7e-29 132.1 100 61.0
Oeu007203.1 Olea europaea HOM05D003709 ORTHO05D004364 3.7e-29 132.1 99 57.6
TPR.G23331 Trifolium pratense HOM05D003709 ORTHO05D004364 3.7e-29 132.1 100 62.0
vmacro07432 Vaccinium macrocarpon HOM05D003709 ORTHO05D004364 3.7e-29 132.1 100 59.0
Gohir.D04G000040 Gossypium hirsutum HOM05D003709 ORTHO05D004364 4.9e-29 131.7 86 67.4
Gorai.012G000500 Gossypium raimondii HOM05D003709 ORTHO05D004364 4.9e-29 131.7 86 67.4
MD07G1268900 Malus domestica HOM05D003709 ORTHO05D004364 4.9e-29 131.7 99 63.6
Solyc10g083220.3 Solanum lycopersicum HOM05D003709 ORTHO05D004364 4.9e-29 131.7 99 62.6
CSS0048031 Camellia sinensis var. sinensis HOM05D003709 ORTHO05D004364 6.4e-29 131.3 100 60.0
Gohir.1Z049729 Gossypium hirsutum HOM05D003709 ORTHO05D004364 6.4e-29 131.3 81 70.4
Actinidia12698 Actinidia chinensis HOM05D003709 ORTHO05D004364 8.3e-29 131.0 100 61.0
Actinidia18412 Actinidia chinensis HOM05D003709 ORTHO05D004364 8.3e-29 131.0 100 61.0
Actinidia28628 Actinidia chinensis HOM05D003709 ORTHO05D004364 8.3e-29 131.0 100 61.0
AT5G06240 Arabidopsis thaliana HOM05D003709 ORTHO05D004364 8.3e-29 131.0 99 62.6
CAN.G841.14 Capsicum annuum HOM05D003709 ORTHO05D004364 8.3e-29 131.0 100 61.0
Hma1.2p1_0245F.1_g101590 Hydrangea macrophylla HOM05D003709 ORTHO05D004364 8.3e-29 131.0 103 60.2
CsaV3_3G037560 Cucumis sativus L. HOM05D003709 ORTHO05D004364 1.4e-28 130.2 100 61.0
Lj1C125T5 Lonicera japonica HOM05D003709 ORTHO05D004364 1.4e-28 130.2 102 61.8
MBI17_g01496_MAGBIO Magnolia biondii HOM05D003709 ORTHO05D004364 1.4e-28 130.2 93 64.5
Actinidia05396 Actinidia chinensis HOM05D003709 ORTHO05D004364 1.8e-28 129.8 101 62.4
Haze_19671 Corylus avellana HOM05D003709 ORTHO05D004364 1.8e-28 129.8 104 59.6
HanXRQChr08g0228531 Helianthus annuus HOM05D003709 ORTHO05D004364 1.8e-28 129.8 100 63.0
Actinidia37294 Actinidia chinensis HOM05D003709 ORTHO05D004364 2.4e-28 129.4 104 57.7
HanXRQChr04g0114081 Helianthus annuus HOM05D003709 ORTHO05D004364 3.2e-28 129.0 100 61.0
Aa31sc52G10 Aethionema arabicum HOM05D003709 ORTHO05D004364 5.4e-28 128.3 99 60.6
HPP92_028584 Vanilla planifolia HOM05D003709 ORTHO05D004364 2.0e-27 126.3 100 59.0
PSO339G2742 Papaver somniferum HOM05D003709 ORTHO05D004364 2.7e-27 125.9 101 57.4
Atru.chr8.1435 Acer truncatum HOM05D003709 ORTHO05D004364 3.5e-27 125.6 99 61.6
ATR0315G087 Amborella trichopoda HOM05D003709 ORTHO05D004364 5.9e-27 124.8 104 59.6
Migut.J00663 Erythranthe guttata HOM05D003709 ORTHO05D004364 5.9e-27 124.8 101 57.4
MD13G1200900 Malus domestica HOM05D003709 ORTHO05D004364 7.8e-27 124.4 99 58.6
unitig_744.g24704 Utricularia gibba HOM05D003709 ORTHO05D004364 7.8e-27 124.4 108 56.5
Gohir.D04G000065 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.7e-26 123.2 91 62.6
Gorai.007G188700 Gossypium raimondii HOM05D003709 ORTHO05D004364 1.7e-26 123.2 86 65.1
Gohir.A12G001133 Gossypium hirsutum HOM05D003709 ORTHO05D004364 3.9e-26 122.1 81 65.4
Gohir.A04G147400 Gossypium hirsutum HOM05D003709 ORTHO05D004364 8.6e-26 120.9 89 60.7
Nitab4.5_0005187g0010 Nicotiana tabacum HOM05D003709 ORTHO05D004364 5.6e-25 118.2 99 58.6
ClCG10G018670 Citrullus lanatus HOM05D003709 ORTHO05D004364 1.2e-24 117.1 72 70.8
Gohir.A13G235900 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.6e-24 116.7 93 58.1
Ah.15g090600 Amaranthus hybridus HOM05D003709 ORTHO05D004364 1.4e-23 113.6 131 46.6
Gohir.D11G176500 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.1e-20 104.0 65 67.7
Gohir.D01G158750 Gossypium hirsutum HOM05D003709 ORTHO05D004364 2.7e-19 99.4 75 61.3
arahy.Tifrunner.gnm1.ann1.PZI97L Arachis hypogaea HOM05D003709 ORTHO05D004364 7.8e-19 97.8 101 53.5
SGA_v2.0_scaffold123G33400 Striga asiatica HOM05D003709 ORTHO05D004364 4.3e-17 92.0 68 57.4
Gohir.D02G000500 Gossypium hirsutum HOM05D003709 ORTHO05D004364 5.8e-14 81.6 86 51.2
Gohir.1Z049340 Gossypium hirsutum HOM05D003709 ORTHO05D004364 6.4e-13 78.2 48 68.8
Gohir.A12G074200 Gossypium hirsutum HOM05D003709 ORTHO05D004364 6.4e-13 78.2 73 52.1
Gohir.D03G178450 Gossypium hirsutum HOM05D003709 ORTHO05D004364 6.4e-13 78.2 48 68.8
AagrBONN_evm.TU.Sc2ySwM_228.2513 Anthoceros agrestis HOM05D003709 ORTHO05D004364 8.3e-13 77.8 108 38.9
Gorai.013G000400 Gossypium raimondii HOM05D003709 ORTHO05D004364 8.3e-13 77.8 48 66.7
Gohir.A05G416901 Gossypium hirsutum HOM05D001765 ORTHO05D003527 5.4e-12 75.1 104 40.4
Gohir.D13G000580 Gossypium hirsutum HOM05D003709 ORTHO05D004364 5.4e-12 75.1 48 64.6
Gohir.A05G416501 Gossypium hirsutum HOM05D001765 ORTHO05D003527 2.1e-11 73.2 104 39.4
Aa31LG11G7230 Aethionema arabicum HOM05D003709 ORTHO05D004364 1.3e-10 70.5 47 61.7
Gohir.D12G071401 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.7e-10 70.1 81 44.4
Gorai.008G079100 Gossypium raimondii HOM05D003709 ORTHO05D004364 1.7e-10 70.1 59 52.5
Gorai.004G000400 Gossypium raimondii HOM05D003709 ORTHO05D004364 3.9e-10 68.9 54 59.3
Gohir.A13G149700 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.1e-09 67.4 63 50.8
Pp3c3_9770 Physcomitrium patens HOM05D003709 ORTHO05D004364 1.1e-09 67.4 103 38.8
CBR_g45657 Chara braunii HOM05D003709 ORTHO05D004364 3.3e-09 65.9 105 39.0
AUR62028484 Chenopodium quinoa HOM05D003709 ORTHO05D138253 4.3e-09 65.5 58 53.4
AUR62028485 Chenopodium quinoa HOM05D003709 ORTHO05D004364 4.3e-09 65.5 58 53.4
AUR62028486 Chenopodium quinoa HOM05D003709 ORTHO05D004364 4.3e-09 65.5 58 53.4
Mapoly0009s0017 Marchantia polymorpha HOM05D003709 ORTHO05D004364 7.3e-09 64.7 60 51.7
AUR62006246 Chenopodium quinoa HOM05D003709 ORTHO05D004364 1.2e-08 63.9 53 56.6
Gohir.A01G177700 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.2e-08 63.9 56 55.4
Gohir.A10G101550 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.2e-08 63.9 56 55.4
Aa31LG11G7240 Aethionema arabicum HOM05D003709 ORTHO05D004364 1.6e-08 63.5 53 56.6
Haze_00443 Corylus avellana HOM05D000273 ORTHO05D000198 1.6e-08 63.5 61 47.5
Gohir.A01G000401 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.6e-08 63.5 44 56.8
Nn2g14234 Nelumbo nucifera HOM05D003709 ORTHO05D004364 1.6e-08 63.5 109 41.3
RcHm_v2.0_Chr2g0174001 Rosa chinensis HOM05D003709 ORTHO05D004364 1.6e-08 63.5 47 66.0
Haze_10129 Corylus avellana HOM05D003709 ORTHO05D004364 2.8e-08 62.8 58 51.7
Haze_19660 Corylus avellana HOM05D003709 ORTHO05D004364 2.8e-08 62.8 57 57.9
Dinv21156 Davidia involucrata HOM05D003709 ORTHO05D004364 3.6e-08 62.4 57 56.1
Gorai.N017600 Gossypium raimondii HOM05D003958 ORTHO05D004864 4.7e-08 62.0 43 62.8
Haze_09934 Corylus avellana HOM05D003709 ORTHO05D004364 1.1e-07 60.8 63 50.8
Hma1.2p1_2017F.1_g311180 Hydrangea macrophylla HOM05D003709 ORTHO05D004364 1.8e-07 60.1 66 51.5
Hund28303 Selenicereus undatus HOM05D003709 ORTHO05D004364 2.0e-06 56.6 32 71.9
TAR636G0224 Trochodendron aralioides HOM05D003709 ORTHO05D004364 2.0e-06 56.6 47 51.1
Hund28305 Selenicereus undatus HOM05D003709 ORTHO05D004364 4.4e-06 55.5 48 56.2


User provided reference genes

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