Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0076300 Salix brachista HOM05D003660 ORTHO05D003415 1.9e-60 235.7 125 100.0
Potri.006G206100 Populus trichocarpa HOM05D003660 ORTHO05D003415 2.0e-33 146.0 94 81.9
Sabra06G0159000 Salix brachista HOM05D003660 ORTHO05D003415 1.3e-32 143.3 116 70.7
Potri.016G073500 Populus trichocarpa HOM05D003660 ORTHO05D003415 7.8e-30 134.0 83 85.5
Manes.08G030600 Manihot esculenta HOM05D003660 ORTHO05D003415 4.0e-26 121.7 91 73.6
CiPaw.10G014700 Carya illinoinensis HOM05D003660 ORTHO05D003415 3.2e-23 112.1 93 67.7
CANSAT64G0684 Cannabis sativa HOM05D003660 ORTHO05D003415 9.2e-23 110.5 93 68.8
TAR623G0029 Trochodendron aralioides HOM05D003660 ORTHO05D003415 9.2e-23 110.5 93 65.6
Duzib093G1675 Durio zibethinus HOM05D003660 ORTHO05D003415 3.5e-22 108.6 94 63.8
Thecc.05G099700 Theobroma cacao HOM05D003660 ORTHO05D003415 1.0e-21 107.1 93 64.5
TAR633G2283 Trochodendron aralioides HOM05D003660 ORTHO05D003415 2.3e-21 105.9 93 62.4
TAR636G3190 Trochodendron aralioides HOM05D003660 ORTHO05D003415 8.6e-21 104.0 93 64.5
Gorai.006G151200 Gossypium raimondii HOM05D003660 ORTHO05D003415 1.1e-20 103.6 93 63.4
ClCG10G018570 Citrullus lanatus HOM05D003660 ORTHO05D003415 1.9e-20 102.8 93 61.3
Nn6g34777 Nelumbo nucifera HOM05D003660 ORTHO05D003415 2.5e-20 102.4 93 61.3
TWI77G0680 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 4.3e-20 101.7 102 58.8
FAN02G2975 Fragaria x ananassa HOM05D003660 ORTHO05D003415 7.3e-20 100.9 96 63.5
Gohir.A09G137200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 7.3e-20 100.9 93 62.4
CSS0013947 Camellia sinensis var. sinensis HOM05D003660 ORTHO05D003415 9.5e-20 100.5 93 64.5
FAN05G5646 Fragaria x ananassa HOM05D003660 ORTHO05D003415 9.5e-20 100.5 96 63.5
FAN05G5661 Fragaria x ananassa HOM05D003660 ORTHO05D003415 9.5e-20 100.5 96 63.5
PGR004G0692 Punica granatum HOM05D003660 ORTHO05D003415 9.5e-20 100.5 93 65.6
RcHm_v2.0_Chr3g0475141 Rosa chinensis HOM05D003660 ORTHO05D003415 9.5e-20 100.5 94 64.9
MD14G1033900 Malus domestica HOM05D003660 ORTHO05D003415 6.2e-19 97.8 93 64.5
Ca_01643_v3 Cicer arietinum L. HOM05D000010 ORTHO05D005236 1.4e-18 96.7 96 59.4
Gohir.A11G318200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.4e-18 96.7 93 59.1
Gohir.D11G337400 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.4e-18 96.7 93 59.1
Gorai.007G367400 Gossypium raimondii HOM05D003660 ORTHO05D003415 1.4e-18 96.7 93 59.1
PSO339G2942 Papaver somniferum HOM05D003660 ORTHO05D003415 1.8e-18 96.3 93 59.1
PSO801G0667 Papaver somniferum HOM05D003660 ORTHO05D003415 1.8e-18 96.3 93 59.1
Rhsim01G0202600 Rhododendron simsii HOM05D003660 ORTHO05D003415 2.3e-18 95.9 93 61.3
FAN14G4527 Fragaria x ananassa HOM05D003660 ORTHO05D003415 3.1e-18 95.5 96 60.4
Nitab4.5_0001135g0080 Nicotiana tabacum HOM05D003660 ORTHO05D003415 4.0e-18 95.1 95 62.1
Oeu035577.1 Olea europaea HOM05D003660 ORTHO05D003415 5.2e-18 94.7 93 58.1
Thecc.09G277300 Theobroma cacao HOM05D003660 ORTHO05D003415 5.2e-18 94.7 93 59.1
Actinidia35475 Actinidia chinensis HOM05D003660 ORTHO05D003415 6.8e-18 94.4 93 60.2
Peaxi162Scf00224g00520 Petunia axillaris HOM05D003660 ORTHO05D003415 8.9e-18 94.0 93 60.2
vmacro14331 Vaccinium macrocarpon HOM05D003660 ORTHO05D003415 8.9e-18 94.0 93 61.3
Manes.04G000300 Manihot esculenta HOM05D003660 ORTHO05D003415 1.2e-17 93.6 93 58.1
Prupe.7G099100 Prunus persica HOM05D003660 ORTHO05D003415 1.2e-17 93.6 93 62.4
Ciclev10029624m.g Citrus clementina HOM05D003660 ORTHO05D003415 3.4e-17 92.0 93 55.9
Medtr2g086880 Medicago truncatula HOM05D000010 ORTHO05D005236 3.4e-17 92.0 93 58.1
Sed0020241 Sechium edule HOM05D003660 ORTHO05D003415 3.4e-17 92.0 93 57.0
Aqoxy4G02700 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 4.4e-17 91.7 93 54.8
Eucgr.K02602 Eucalyptus grandis HOM05D003660 ORTHO05D003415 4.4e-17 91.7 93 59.1
VMungo1080G1056 Vigna mungo HOM05D003660 ORTHO05D003415 5.8e-17 91.3 93 57.0
Solyc11g068760.2 Solanum lycopersicum HOM05D003660 ORTHO05D003415 9.8e-17 90.5 93 58.1
Sopen11g027470 Solanum pennellii HOM05D003660 ORTHO05D003415 9.8e-17 90.5 93 58.1
MSTRG.12378 Avicennia marina HOM05D003660 ORTHO05D003415 1.3e-16 90.1 93 58.1
Glyma.13G314500 Glycine max HOM05D003660 ORTHO05D003415 1.3e-16 90.1 93 55.9
Phvul.005G121700 Phaseolus vulgaris HOM05D003660 ORTHO05D003415 1.3e-16 90.1 93 57.0
MD11G1171800 Malus domestica HOM05D003660 ORTHO05D003415 1.7e-16 89.7 93 53.8
Lj3g0024971 Lotus japonicus HOM05D003660 ORTHO05D003415 2.2e-16 89.4 93 57.0
MSTRG.17695 Avicennia marina HOM05D003660 ORTHO05D003415 2.9e-16 89.0 93 54.8
Cc01_g08660 Coffea canephora HOM05D003660 ORTHO05D003415 3.7e-16 88.6 85 58.8
Glyma.12G186952 Glycine max HOM05D003660 ORTHO05D003415 3.7e-16 88.6 93 55.9
HPP92_009784 Vanilla planifolia HOM05D003660 ORTHO05D003415 4.9e-16 88.2 93 57.0
Hund18786 Selenicereus undatus HOM05D003660 ORTHO05D003415 1.1e-15 87.0 93 55.9
arahy.Tifrunner.gnm1.ann1.PLL1TV Arachis hypogaea HOM05D003660 ORTHO05D003415 1.4e-15 86.7 100 54.0
Sc12g0004740 Simmondsia chinensis HOM05D003660 ORTHO05D003415 1.4e-15 86.7 93 55.9
Gorai.006G113800 Gossypium raimondii HOM05D003660 ORTHO05D003415 1.9e-15 86.3 112 50.0
MBI17_g39787_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 1.9e-15 86.3 93 55.9
Atru.chr3.3157 Acer truncatum HOM05D003660 ORTHO05D003415 2.4e-15 85.9 93 52.7
RcHm_v2.0_Chr5g0047201 Rosa chinensis HOM05D003660 ORTHO05D003415 2.4e-15 85.9 93 52.7
Gohir.A09G097300 Gossypium hirsutum HOM05D003660 ORTHO05D003415 3.2e-15 85.5 112 49.1
MBI01_g04518_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 3.2e-15 85.5 93 55.9
unitig_22.g6156 Utricularia gibba HOM05D003660 ORTHO05D003415 3.2e-15 85.5 93 55.9
Duzib170G1097 Durio zibethinus HOM05D000010 ORTHO05D005236 4.1e-15 85.1 93 54.8
MELO3C009511.2 Cucumis melo HOM05D003660 ORTHO05D003415 5.4e-15 84.7 93 53.8
Hund20939 Selenicereus undatus HOM05D003660 ORTHO05D003415 7.0e-15 84.3 93 52.7
MD12G1033100 Malus domestica HOM05D003660 ORTHO05D003415 9.2e-15 84.0 93 54.8
Hma1.2p1_1178F.1_g264370 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 1.2e-14 83.6 93 51.6
Hma1.2p1_2789F.1_g328565 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 1.2e-14 83.6 93 51.6
Lalb_Chr19g0136331 Lupinus albus HOM05D003660 ORTHO05D003415 1.2e-14 83.6 94 54.3
Migut.D02421 Erythranthe guttata HOM05D003660 ORTHO05D003415 1.6e-14 83.2 93 57.0
CiPaw.14G096800 Carya illinoinensis HOM05D003660 ORTHO05D003415 2.1e-14 82.8 93 51.6
MD03G1151200 Malus domestica HOM05D003660 ORTHO05D003415 2.1e-14 82.8 93 50.5
Gohir.D09G097100 Gossypium hirsutum HOM05D003660 ORTHO05D003415 2.7e-14 82.4 112 49.1
TPR.G4509 Trifolium pratense HOM05D003660 ORTHO05D003415 6.0e-14 81.3 66 66.7
arahy.Tifrunner.gnm1.ann1.W33SWH Arachis hypogaea HOM05D003660 ORTHO05D003415 7.8e-14 80.9 110 50.0
Migut.D02405 Erythranthe guttata HOM05D003660 ORTHO05D003415 7.8e-14 80.9 93 55.9
FvH4_3g25870 Fragaria vesca HOM05D003660 ORTHO05D003415 7.8e-14 80.9 93 51.6
FAN11G1383 Fragaria x ananassa HOM05D003660 ORTHO05D003415 7.8e-14 80.9 93 51.6
FAN21G0895 Fragaria x ananassa HOM05D003660 ORTHO05D003415 7.8e-14 80.9 93 51.6
FAN25G0104 Fragaria x ananassa HOM05D003660 ORTHO05D003415 7.8e-14 80.9 93 51.6
CANSAT54G1844 Cannabis sativa HOM05D003660 ORTHO05D003415 1.0e-13 80.5 91 56.0
MELO3C014510.2 Cucumis melo HOM05D000010 ORTHO05D005236 1.7e-13 79.7 93 57.0
CsaV3_3G037680 Cucumis sativus L. HOM05D003660 ORTHO05D003415 2.3e-13 79.3 93 50.5
Lalb_Chr14g0376021 Lupinus albus HOM05D003660 ORTHO05D003415 2.3e-13 79.3 94 53.2
ClCG02G022340 Citrullus lanatus HOM05D003660 ORTHO05D003415 3.0e-13 79.0 93 57.0
CsaV3_6G038470 Cucumis sativus L. HOM05D003660 ORTHO05D003415 3.0e-13 79.0 93 55.9
Rhsim03G0067700 Rhododendron simsii HOM05D003660 ORTHO05D003415 8.6e-13 77.4 102 50.0
ECA248G2122 Erigeron canadensis HOM05D003660 ORTHO05D003415 1.1e-12 77.0 92 52.2
Gorai.009G083400 Gossypium raimondii HOM05D003660 ORTHO05D003415 1.1e-12 77.0 93 53.8
HanXRQChr02g0053831 Helianthus annuus HOM05D003660 ORTHO05D003415 1.1e-12 77.0 88 52.3
Os02g0536100 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 1.1e-12 77.0 94 48.9
SalBow3G1900 Salvia bowleyana HOM05D003660 ORTHO05D003415 1.1e-12 77.0 93 53.8
Dinv22800 Davidia involucrata HOM05D003660 ORTHO05D003415 1.9e-12 76.3 81 60.5
Gohir.A05G078900 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.9e-12 76.3 93 53.8
Eucgr.J00533 Eucalyptus grandis HOM05D003660 ORTHO05D003415 3.3e-12 75.5 93 54.8
Lsat_1_v5_gn_1_57561 Lactuca sativa HOM05D003660 ORTHO05D003415 3.3e-12 75.5 91 50.5
COL.COLO4_04567 Corchorus olitorius HOM05D003660 ORTHO05D003415 5.6e-12 74.7 94 51.1
Aqoxy2G01022 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 7.3e-12 74.3 93 50.5
Aa31LG1G13260 Aethionema arabicum HOM05D003660 ORTHO05D003415 9.5e-12 73.9 97 50.5
HanXRQChr01g0024911 Helianthus annuus HOM05D003660 ORTHO05D003415 9.5e-12 73.9 91 50.5
Actinidia06171 Actinidia chinensis HOM05D003660 ORTHO05D003415 1.6e-11 73.2 80 56.2
Potri.004G200200 Populus trichocarpa HOM05D003660 ORTHO05D003415 2.1e-11 72.8 93 50.5
Sp6g36600 Schrenkiella parvula HOM05D008756 ORTHO05D003415 2.1e-11 72.8 89 52.8
AL6G33280 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 2.8e-11 72.4 97 50.5
BNapus_Darmor_BZH_scaffold_38p00770 Brassica napus HOM05D003660 ORTHO05D003415 2.8e-11 72.4 97 49.5
Carub.0006s2002 Capsella rubella HOM05D003660 ORTHO05D003415 6.2e-11 71.2 97 50.5
Prupe.6G138900 Prunus persica HOM05D003660 ORTHO05D003415 6.2e-11 71.2 73 57.5
Zm00001eb242920 Zea mays HOM05D003660 ORTHO05D003415 6.2e-11 71.2 93 43.0
Carub.0005s1000 Capsella rubella HOM05D003660 ORTHO05D003415 1.1e-10 70.5 92 50.0
Zm00001eb304510 Zea mays HOM05D003660 ORTHO05D003415 1.4e-10 70.1 92 47.8
AT5G22280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 1.8e-10 69.7 97 49.5
TWI74G0792 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 1.8e-10 69.7 79 51.9
Sabra04G0135300 Salix brachista HOM05D003660 ORTHO05D003415 3.1e-10 68.9 109 45.0
CARHR104590 Cardamine hirsuta HOM05D003660 ORTHO05D003415 6.8e-10 67.8 92 47.8
Sp6g22960 Schrenkiella parvula HOM05D003660 ORTHO05D003415 6.8e-10 67.8 83 54.2
BcaC03g13871 Brassica carinata HOM05D003660 ORTHO05D003415 8.9e-10 67.4 94 46.8
C02p10760 Brassica napus HOM05D003660 ORTHO05D003415 8.9e-10 67.4 94 46.8
BolC2t07146H Brassica oleracea HOM05D003660 ORTHO05D003415 8.9e-10 67.4 94 46.8
SGA_v2.0_scaffold295G47504 Striga asiatica HOM05D003660 ORTHO05D003415 8.9e-10 67.4 92 42.4
THA.LOC104799557 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 1.2e-09 67.0 94 44.7
BcaC06g32337 Brassica carinata HOM05D008756 ORTHO05D003415 1.5e-09 66.6 90 48.9
BolC9t59818H Brassica oleracea HOM05D008756 ORTHO05D003415 1.5e-09 66.6 90 48.9
BcaB01g04718 Brassica carinata HOM05D003660 ORTHO05D003415 2.0e-09 66.2 95 48.4
BcaB05g22739 Brassica carinata HOM05D003660 ORTHO05D003415 2.0e-09 66.2 97 48.5
AL5G22410 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 3.4e-09 65.5 92 48.9
CDE04G3260 Ceratophyllum demersum HOM05D003660 ORTHO05D003415 4.4e-09 65.1 83 50.6
Thhalv10010953m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 4.4e-09 65.1 96 47.9
AT3G44280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 5.8e-09 64.7 92 47.8
BcaC01g06594 Brassica carinata HOM05D003660 ORTHO05D003415 5.8e-09 64.7 95 48.4
C03p12270 Brassica napus HOM05D003660 ORTHO05D003415 5.8e-09 64.7 95 48.4
THA.LOC104810930 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 5.8e-09 64.7 94 45.7
A06p22070 Brassica napus HOM05D003660 ORTHO05D003415 7.5e-09 64.3 92 46.7
CARHR206980 Cardamine hirsuta HOM05D008756 ORTHO05D003415 7.5e-09 64.3 89 49.4
SGA_v2.0_scaffold7G03991 Striga asiatica HOM05D003660 ORTHO05D003415 7.5e-09 64.3 73 54.8
Aa31LG4G13780 Aethionema arabicum HOM05D003660 ORTHO05D003415 9.9e-09 63.9 94 50.0
BcaC06g32356 Brassica carinata HOM05D008756 ORTHO05D003415 9.9e-09 63.9 90 47.8
Thhalv10015076m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 1.3e-08 63.5 94 44.7
BcaB08g36812 Brassica carinata HOM05D003660 ORTHO05D003415 1.7e-08 63.2 97 48.5
ATR0772G050 Amborella trichopoda HOM05D003660 ORTHO05D003415 2.2e-08 62.8 59 62.7
A03p10660 Brassica napus HOM05D003660 ORTHO05D003415 2.2e-08 62.8 95 47.4
BraA03t10378Z Brassica rapa HOM05D003660 ORTHO05D003415 2.2e-08 62.8 95 47.4
Psat7g186360 Pisum sativum HOM05D003660 ORTHO05D003415 3.7e-08 62.0 67 58.2
Lj3g0015124 Lotus japonicus HOM05D003660 ORTHO05D003415 6.4e-08 61.2 87 44.8
Os07g0250300 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 6.4e-08 61.2 93 43.0
vmacro07457 Vaccinium macrocarpon HOM05D003660 ORTHO05D003415 8.3e-08 60.8 55 60.0
Aa31sc52G60 Aethionema arabicum HOM05D008756 ORTHO05D003415 1.1e-07 60.5 88 46.6
Haze_23336 Corylus avellana HOM05D003660 ORTHO05D003415 1.1e-07 60.5 62 51.6
Sabra04G0135400 Salix brachista HOM05D003660 ORTHO05D003415 1.9e-07 59.7 57 56.1
Zm00001eb211110 Zea mays HOM05D003660 ORTHO05D003415 1.9e-07 59.7 93 45.2
Sp5g16990 Schrenkiella parvula HOM05D003660 ORTHO05D003415 2.4e-07 59.3 95 45.3
Gohir.D05G081800 Gossypium hirsutum HOM05D003660 ORTHO05D003415 3.2e-07 58.9 93 46.2
SEGI_04697 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 3.2e-07 58.9 67 53.7
BolC9t59816H Brassica oleracea HOM05D008756 ORTHO05D003415 4.1e-07 58.5 109 43.1
DCAR_020727 Daucus carota HOM05D003660 ORTHO05D003415 4.1e-07 58.5 119 37.0
Migut.N02469 Erythranthe guttata HOM05D003660 ORTHO05D003415 4.1e-07 58.5 92 39.1
BolC9t59806H Brassica oleracea HOM05D008756 ORTHO05D003415 7.1e-07 57.8 90 47.8
C03p69380 Brassica napus HOM05D003660 ORTHO05D003415 9.2e-07 57.4 73 53.4
BraA06t25297Z Brassica rapa HOM05D003660 ORTHO05D003415 9.2e-07 57.4 75 53.3
Cpa.g.sc195.36 Carica papaya HOM05D003660 ORTHO05D003415 9.2e-07 57.4 67 53.7
ECA233G4994 Erigeron canadensis HOM05D003660 ORTHO05D003415 9.2e-07 57.4 70 54.3
Os03g0836500 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 1.2e-06 57.0 93 44.1
BolC9t59813H Brassica oleracea HOM05D008756 ORTHO05D003415 1.6e-06 56.6 109 42.2
THA.LOC104826814 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 1.6e-06 56.6 93 44.1
SEGI_28618 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 2.1e-06 56.2 93 40.9
Cc00_g18350 Coffea canephora HOM05D003660 ORTHO05D003415 2.7e-06 55.8 59 52.5
Carub.0333s0001 Capsella rubella HOM05D003660 ORTHO05D003415 4.6e-06 55.1 61 59.0
Carub.0006s0515 Capsella rubella HOM05D008756 ORTHO05D003415 6.0e-06 54.7 86 47.7
PGR119G0448 Punica granatum HOM05D003660 ORTHO05D003415 6.0e-06 54.7 94 40.4
AL6G16290 Arabidopsis lyrata HOM05D008756 ORTHO05D003415 7.8e-06 54.3 86 46.5


User provided reference genes

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