Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0070800 Salix brachista HOM05D005892 ORTHO05D007364 1.4e-276 955.7 480 100.0
Potri.016G070700 Populus trichocarpa HOM05D005892 ORTHO05D007364 2.3e-215 752.3 487 82.5
Sabra16G0073000 Salix brachista HOM05D005892 ORTHO05D007364 9.4e-201 703.7 481 80.2
Manes.08G033200 Manihot esculenta HOM05D005892 ORTHO05D007364 2.7e-179 632.5 468 70.7
Cfa020027 Carpinus fangiana HOM05D005892 ORTHO05D007364 8.0e-168 594.3 448 68.8
Atru.chr8.1369 Acer truncatum HOM05D005892 ORTHO05D007364 2.1e-160 569.7 454 65.0
Ciclev10011749m.g Citrus clementina HOM05D005892 ORTHO05D007364 1.4e-159 567.0 457 63.9
CiPaw.10G017200 Carya illinoinensis HOM05D005892 ORTHO05D007364 4.0e-159 565.5 468 63.2
RcHm_v2.0_Chr3g0475881 Rosa chinensis HOM05D005892 ORTHO05D007364 7.6e-158 561.2 449 65.3
FAN14G3222 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.2e-157 559.7 449 65.5
COL.COLO4_29579 Corchorus olitorius HOM05D005892 ORTHO05D007364 4.9e-157 558.5 448 65.2
Duzib093G2092 Durio zibethinus HOM05D005892 ORTHO05D007364 6.4e-157 558.1 448 65.6
FAN05G3301 Fragaria x ananassa HOM05D005892 ORTHO05D007364 7.1e-156 554.7 449 64.8
Gorai.002G235400 Gossypium raimondii HOM05D005892 ORTHO05D007364 7.1e-156 554.7 445 64.0
Thecc.05G104100 Theobroma cacao HOM05D005892 ORTHO05D007364 7.1e-156 554.7 446 63.9
Cpa.g.sc35.59 Carica papaya HOM05D005892 ORTHO05D007364 1.6e-155 553.5 478 63.4
Gohir.A01G201600 Gossypium hirsutum HOM05D005892 ORTHO05D007364 2.1e-155 553.1 448 63.4
Gohir.D01G191500 Gossypium hirsutum HOM05D005892 ORTHO05D007364 6.0e-155 551.6 445 63.6
CSS0032108 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 1.3e-154 550.4 465 61.5
Prupe.7G094800 Prunus persica HOM05D005892 ORTHO05D007364 1.7e-154 550.1 473 62.6
GSVIVG01029940001 Vitis vinifera HOM05D005892 ORTHO05D007364 2.3e-154 549.7 468 61.3
PGR142G3547 Punica granatum HOM05D005892 ORTHO05D007364 5.6e-153 545.0 470 61.1
Lj3A860G48 Lonicera japonica HOM05D005892 ORTHO05D007364 1.5e-150 537.0 471 61.4
TAR633G2239 Trochodendron aralioides HOM05D005892 ORTHO05D007364 9.9e-150 534.3 472 59.5
QL07p036776 Quercus lobata HOM05D005892 ORTHO05D007364 2.9e-149 532.7 504 57.5
MD14G1038600 Malus domestica HOM05D005892 ORTHO05D007364 2.4e-148 529.6 465 61.7
Hma1.2p1_1525F.1_g288970 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 2.3e-146 523.1 427 64.9
Haze_20187 Corylus avellana HOM05D005892 ORTHO05D007364 1.4e-143 513.8 471 61.6
THA.LOC104816617 Tarenaya hassleriana HOM05D005892 ORTHO05D007364 1.3e-141 507.3 463 59.2
Eucgr.K02619 Eucalyptus grandis HOM05D005892 ORTHO05D007364 1.1e-140 504.2 453 59.4
Cc11_g05910 Coffea canephora HOM05D005892 ORTHO05D007364 7.1e-140 501.5 475 57.9
FvH4_6g20290 Fragaria vesca HOM05D005892 ORTHO05D007364 6.0e-139 498.4 389 67.1
Nitab4.5_0007165g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 3.3e-137 492.7 469 57.1
DCAR_026818 Daucus carota HOM05D005892 ORTHO05D007364 4.3e-137 492.3 458 56.6
Glyma.19G026300 Glycine max HOM05D005892 ORTHO05D007364 4.3e-137 492.3 448 57.6
Glyma.03G201900 Glycine max HOM05D005892 ORTHO05D007364 5.6e-137 491.9 450 57.6
ClCG10G018360 Citrullus lanatus HOM05D005892 ORTHO05D007364 1.6e-136 490.3 473 56.2
Medtr7g106200 Medicago truncatula HOM05D005892 ORTHO05D007364 1.8e-135 486.9 470 56.2
Nitab4.5_0005476g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 3.1e-135 486.1 472 56.6
Peaxi162Scf01139g00002 Petunia axillaris HOM05D005892 ORTHO05D007364 4.0e-135 485.7 472 55.9
Rhsim09G0086500 Rhododendron simsii HOM05D005892 ORTHO05D007364 6.9e-135 485.0 466 56.4
Ca_25808_v3 Cicer arietinum L. HOM05D005892 ORTHO05D007364 9.0e-135 484.6 472 54.7
Lalb_Chr20g0111381 Lupinus albus HOM05D005892 ORTHO05D007364 2.6e-134 483.0 477 54.3
Phvul.001G195400 Phaseolus vulgaris HOM05D005892 ORTHO05D007364 2.6e-134 483.0 454 56.6
PGSC0003DMG400006864 Solanum tuberosum HOM05D005892 ORTHO05D007364 2.2e-133 479.9 453 57.2
ECA234G1824 Erigeron canadensis HOM05D005892 ORTHO05D007364 3.2e-132 476.1 446 57.0
Lj1g0008745 Lotus japonicus HOM05D005892 ORTHO05D007364 5.4e-132 475.3 477 55.3
Sed0021278 Sechium edule HOM05D005892 ORTHO05D007364 1.6e-131 473.8 475 54.3
PSO339G5192 Papaver somniferum HOM05D005892 ORTHO05D007364 2.1e-131 473.4 477 55.8
CARHR083520 Cardamine hirsuta HOM05D005892 ORTHO05D007364 1.0e-130 471.1 471 56.5
HanXRQChr16g0527301 Helianthus annuus HOM05D005892 ORTHO05D007364 2.3e-130 469.9 458 57.6
MSTRG.13644 Avicennia marina HOM05D005892 ORTHO05D007364 5.1e-130 468.8 465 55.9
PSO384G1009 Papaver somniferum HOM05D005892 ORTHO05D007364 5.1e-130 468.8 477 55.3
Migut.E00525 Erythranthe guttata HOM05D005892 ORTHO05D007364 6.7e-130 468.4 450 57.6
Actinidia12433 Actinidia chinensis HOM05D005892 ORTHO05D007364 2.5e-129 466.5 413 60.3
arahy.Tifrunner.gnm1.ann1.EHSJ8W Arachis hypogaea HOM05D005892 ORTHO05D007364 4.3e-129 465.7 449 55.2
BraA05t22764Z Brassica rapa HOM05D005892 ORTHO05D007364 9.6e-129 464.5 465 55.9
AL3G20290 Arabidopsis lyrata HOM05D005892 ORTHO05D007364 1.3e-128 464.2 438 57.5
FAN09G4751 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.3e-128 464.2 375 65.3
Solyc01g087230.3 Solanum lycopersicum HOM05D005892 ORTHO05D007364 1.3e-128 464.2 457 55.6
Sopen01g034280 Solanum pennellii HOM05D005892 ORTHO05D007364 1.3e-128 464.2 457 55.6
A05p39800 Brassica napus HOM05D005892 ORTHO05D007364 1.1e-127 461.1 465 55.7
Lsat_1_v5_gn_4_22820 Lactuca sativa HOM05D005892 ORTHO05D007364 3.1e-127 459.5 479 54.1
BolC5t34536H Brassica oleracea HOM05D005892 ORTHO05D007364 1.5e-126 457.2 465 55.1
C05p58840 Brassica napus HOM05D005892 ORTHO05D007364 2.0e-126 456.8 465 55.1
Sp3g07480 Schrenkiella parvula HOM05D005892 ORTHO05D007364 2.6e-126 456.4 468 54.9
Thhalv10020833m.g Eutrema salsugineum HOM05D005892 ORTHO05D007364 3.8e-125 452.6 472 54.0
SalBow2G2452 Salvia bowleyana HOM05D005892 ORTHO05D007364 3.8e-125 452.6 474 55.1
FAN05G1366 Fragaria x ananassa HOM05D005892 ORTHO05D007364 5.5e-124 448.7 383 64.0
EL10Ac9g21147 Beta vulgaris HOM05D005892 ORTHO05D007364 7.1e-124 448.4 442 54.1
Psat3g029200 Pisum sativum HOM05D005892 ORTHO05D007364 2.7e-123 446.4 451 52.1
Nn2g14624 Nelumbo nucifera HOM05D005892 ORTHO05D007364 6.0e-123 445.3 415 59.3
Carub.0003s0830 Capsella rubella HOM05D005892 ORTHO05D007364 3.0e-122 443.0 422 57.3
CDE02G2672 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 3.0e-122 443.0 449 53.0
AUR62036522 Chenopodium quinoa HOM05D005892 ORTHO05D007364 3.0e-122 443.0 459 52.5
Hma1.2p1_1525F.1_g288980 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 3.0e-122 443.0 379 60.9
BcaC01g06891 Brassica carinata HOM05D005892 ORTHO05D007364 3.9e-122 442.6 473 53.1
C03p43860 Brassica napus HOM05D005892 ORTHO05D007364 3.9e-122 442.6 473 53.1
BolC3t16654H Brassica oleracea HOM05D005892 ORTHO05D007364 1.5e-121 440.7 473 52.9
BraA03t12793Z Brassica rapa HOM05D005892 ORTHO05D007364 5.7e-121 438.7 436 55.5
AUR62042262 Chenopodium quinoa HOM05D005892 ORTHO05D007364 7.4e-121 438.3 434 53.7
FAN05G3684 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.0e-117 427.9 282 76.6
Aqoxy1G00010 Aquilegia oxysepala HOM05D005892 ORTHO05D007364 1.3e-117 427.6 490 49.4
CsaV3_3G037930 Cucumis sativus L. HOM05D005892 ORTHO05D007364 1.3e-117 427.6 411 56.7
CAN.G219.4 Capsicum annuum HOM05D005892 ORTHO05D007364 2.2e-117 426.8 407 56.5
AT3G09180 Arabidopsis thaliana HOM05D005892 ORTHO05D007364 6.5e-117 425.2 412 57.8
Ah.10g030320 Amaranthus hybridus HOM05D005892 ORTHO05D007364 9.3e-116 421.4 477 50.5
A03p36220 Brassica napus HOM05D005892 ORTHO05D007364 1.2e-115 421.0 438 54.1
MBI19_g09306_MAGBIO Magnolia biondii HOM05D005892 ORTHO05D007364 2.5e-113 413.3 478 50.2
SGA_v2.0_scaffold65G22109 Striga asiatica HOM05D005892 ORTHO05D007364 2.5e-113 413.3 468 51.7
FAN05G0385 Fragaria x ananassa HOM05D005892 ORTHO05D007364 7.4e-113 411.8 282 74.8
MELO3C009537.2 Cucumis melo HOM05D005892 ORTHO05D007364 5.3e-111 405.6 462 51.3
Zm00001eb156320 Zea mays HOM05D005892 ORTHO05D007364 1.2e-110 404.4 470 50.4
Os01g0263500 Oryza sativa ssp. japonica HOM05D005892 ORTHO05D007364 5.9e-110 402.1 450 52.2
VMungo1383G1945 Vigna mungo HOM05D005892 ORTHO05D007364 1.7e-109 400.6 393 55.2
Aa31LG3G1670 Aethionema arabicum HOM05D005892 ORTHO05D007364 1.4e-108 397.5 397 56.4
HPP92_001371 Vanilla planifolia HOM05D005892 ORTHO05D007364 1.2e-107 394.4 480 46.7
TAR633G0738 Trochodendron aralioides HOM05D005892 ORTHO05D007364 1.8e-106 390.6 308 65.9
HPP92_001347 Vanilla planifolia HOM05D005892 ORTHO05D007364 5.7e-105 385.6 448 48.2
CDE04G0639 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 6.3e-104 382.1 448 49.1
Hund10710 Selenicereus undatus HOM05D005892 ORTHO05D007364 1.3e-101 374.4 369 56.1
ATR0068G118 Amborella trichopoda HOM05D005892 ORTHO05D007364 1.9e-100 370.5 494 47.8
HPP92_001441 Vanilla planifolia HOM05D005892 ORTHO05D007364 7.2e-100 368.6 462 45.7
Sc07g0007600 Simmondsia chinensis HOM05D005892 ORTHO05D007364 6.1e-99 365.5 302 64.2
arahy.Tifrunner.gnm1.ann1.PAXQ04 Arachis hypogaea HOM05D005892 ORTHO05D007364 5.1e-98 362.5 350 56.0
TPR.G14083 Trifolium pratense HOM05D005892 ORTHO05D007364 1.6e-94 350.9 386 50.8
FAN02G1987 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.5e-92 344.4 391 51.2
unitig_52.g17290 Utricularia gibba HOM05D005892 ORTHO05D007364 1.0e-90 338.2 370 53.8
Zm00001eb348930 Zea mays HOM05D005892 ORTHO05D007364 8.5e-85 318.5 379 48.5
BcaB04g18552 Brassica carinata HOM05D005892 ORTHO05D007364 2.2e-72 277.3 228 65.4
RcHm_v2.0_Chr1g0331121 Rosa chinensis HOM05D005892 ORTHO05D007364 1.9e-68 264.2 263 54.8
Mapoly0090s0009 Marchantia polymorpha HOM05D005892 ORTHO05D007364 4.4e-57 226.5 472 35.0
RcHm_v2.0_Chr1g0331111 Rosa chinensis HOM05D005892 ORTHO05D007364 2.4e-55 220.7 128 84.4
Nn2g14691 Nelumbo nucifera HOM05D005892 ORTHO05D007364 6.6e-53 212.6 150 78.7
Pp3c15_4850 Physcomitrium patens HOM05D005892 ORTHO05D007364 2.5e-52 210.7 497 33.6
Atru.chr9.699 Acer truncatum HOM05D005892 ORTHO05D007364 3.7e-48 196.8 124 77.4
Peaxi162Scf00684g00585 Petunia axillaris HOM05D005892 ORTHO05D007364 2.3e-45 187.6 375 34.9
AagrBONN_evm.TU.Sc2ySwM_228.2745 Anthoceros agrestis HOM05D005892 ORTHO05D007364 9.2e-39 165.6 489 29.0
BcaC05g29638 Brassica carinata HOM05D005892 ORTHO05D007364 5.1e-29 133.3 108 66.7
Atru.chr9.700 Acer truncatum HOM05D005892 ORTHO05D007364 6.6e-29 132.9 133 56.4
Hma1.2p1_1525F.1_g288960 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 6.4e-24 116.3 91 71.4
Aa31sc80G50 Aethionema arabicum HOM05D005892 ORTHO05D007364 3.2e-23 114.0 92 64.1
CSS0000115 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 4.6e-22 110.2 95 63.2
TPR.G35563 Trifolium pratense HOM05D005892 ORTHO05D007364 4.3e-20 103.6 105 50.5
SEGI_21584 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 3.1e-18 97.4 113 39.8
HPP92_019993 Vanilla planifolia HOM05D002096 ORTHO05D002203 5.8e-17 93.2 203 33.5
SEGI_07863 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 4.5e-09 67.0 92 44.6


User provided reference genes

Program Settings