Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0062800 Salix brachista HOM05D007056 ORTHO05D008278 1.2e-149 533.1 261 100.0
Potri.016G060000 Populus trichocarpa HOM05D007056 ORTHO05D008278 2.1e-138 495.7 261 94.3
CiPaw.09G028900 Carya illinoinensis HOM05D007056 ORTHO05D008278 9.6e-107 390.6 261 73.6
Lalb_Chr18g0048001 Lupinus albus HOM05D007056 ORTHO05D008278 1.3e-106 390.2 261 73.6
Nn2g15729 Nelumbo nucifera HOM05D007056 ORTHO05D008278 2.1e-106 389.4 265 74.3
Prupe.7G080200 Prunus persica HOM05D007056 ORTHO05D008278 6.9e-105 384.4 271 72.0
PGR142G3072 Punica granatum HOM05D007056 ORTHO05D008278 1.2e-104 383.6 263 71.9
Ciclev10012466m.g Citrus clementina HOM05D007056 ORTHO05D008278 2.0e-104 382.9 268 73.1
Cfa020149 Carpinus fangiana HOM05D007056 ORTHO05D008278 2.6e-104 382.5 264 73.1
Actinidia38590 Actinidia chinensis HOM05D007056 ORTHO05D008278 3.4e-104 382.1 268 72.4
Dinv16370 Davidia involucrata HOM05D007056 ORTHO05D008278 3.4e-104 382.1 261 72.8
QL07p024320 Quercus lobata HOM05D007056 ORTHO05D008278 3.4e-104 382.1 260 70.8
QL07p024358 Quercus lobata HOM05D007056 ORTHO05D008278 3.4e-104 382.1 260 70.8
Ca_08534_v3 Cicer arietinum L. HOM05D007056 ORTHO05D008278 1.7e-103 379.8 258 73.6
CSS0008084 Camellia sinensis var. sinensis HOM05D007056 ORTHO05D008278 3.8e-103 378.6 260 71.5
MD14G1054600 Malus domestica HOM05D007056 ORTHO05D008278 3.8e-103 378.6 276 69.6
Cpa.g.sc85.61 Carica papaya HOM05D007056 ORTHO05D008278 6.4e-103 377.9 262 72.5
Thecc.05G174400 Theobroma cacao HOM05D007056 ORTHO05D008278 1.1e-102 377.1 271 72.0
FAN09G4108 Fragaria x ananassa HOM05D007056 ORTHO05D008278 4.2e-102 375.2 263 72.6
RcHm_v2.0_Chr3g0479281 Rosa chinensis HOM05D007056 ORTHO05D008278 4.2e-102 375.2 262 71.8
Gorai.012G099400 Gossypium raimondii HOM05D007056 ORTHO05D008278 5.5e-102 374.8 262 71.4
arahy.Tifrunner.gnm1.ann1.DK1M71 Arachis hypogaea HOM05D007056 ORTHO05D008278 7.1e-102 374.4 262 71.4
Gohir.D04G089300 Gossypium hirsutum HOM05D007056 ORTHO05D008278 1.2e-101 373.6 262 71.4
Duzib093G0790 Durio zibethinus HOM05D007056 ORTHO05D008278 1.6e-101 373.2 275 70.2
Glyma.19G149400 Glycine max HOM05D007056 ORTHO05D008278 1.6e-101 373.2 259 71.4
TAR369G0080 Trochodendron aralioides HOM05D007056 ORTHO05D008278 2.1e-101 372.9 267 70.4
CANSAT64G0992 Cannabis sativa HOM05D007056 ORTHO05D008278 4.6e-101 371.7 264 71.2
CsaV3_3G038650 Cucumis sativus L. HOM05D007056 ORTHO05D008278 6.0e-101 371.3 263 68.8
VMungo1383G1827 Vigna mungo HOM05D007056 ORTHO05D008278 6.0e-101 371.3 259 71.8
Lj2A365G87 Lonicera japonica HOM05D007056 ORTHO05D008278 3.9e-100 368.6 201 85.1
arahy.Tifrunner.gnm1.ann1.LTU6F0 Arachis hypogaea HOM05D007056 ORTHO05D008278 5.1e-100 368.2 259 71.0
TWI77G0776 Tripterygium wilfordii HOM05D007056 ORTHO05D008278 5.1e-100 368.2 260 72.3
Medtr7g093540 Medicago truncatula HOM05D007056 ORTHO05D008278 8.7e-100 367.5 261 70.5
Lj1g0028043 Lotus japonicus HOM05D007056 ORTHO05D008278 1.1e-99 367.1 260 70.0
FAN14G2508 Fragaria x ananassa HOM05D007056 ORTHO05D008278 1.5e-99 366.7 263 71.1
Aqoxy2G00097 Aquilegia oxysepala HOM05D007056 ORTHO05D008278 1.9e-99 366.3 259 69.9
Atru.chr8.1149 Acer truncatum HOM05D007056 ORTHO05D008278 1.3e-98 363.6 259 69.1
Eucgr.K01848 Eucalyptus grandis HOM05D007056 ORTHO05D008278 2.1e-98 362.8 217 79.3
SGA_v2.0_scaffold69G23055 Striga asiatica HOM05D007056 ORTHO05D008278 2.1e-98 362.8 237 74.7
Os02g0774500 Oryza sativa ssp. japonica HOM05D007056 ORTHO05D008278 3.7e-98 362.1 206 81.1
AT3G12040 Arabidopsis thaliana HOM05D007056 ORTHO05D008278 8.1e-98 360.9 246 71.5
Zm00001eb256530 Zea mays HOM05D007056 ORTHO05D008278 1.1e-97 360.5 194 84.5
Phvul.001G143900 Phaseolus vulgaris HOM05D007056 ORTHO05D008278 1.4e-97 360.1 258 69.8
Cc06_g15700 Coffea canephora HOM05D007056 ORTHO05D008278 1.8e-97 359.8 260 68.8
MBI19_g17420_MAGBIO Magnolia biondii HOM05D007056 ORTHO05D008278 1.8e-97 359.8 265 69.4
EL10Ac3g06891 Beta vulgaris HOM05D007056 ORTHO05D008278 3.1e-97 359.0 265 67.2
AL3G23650 Arabidopsis lyrata HOM05D007056 ORTHO05D008278 4.0e-97 358.6 248 71.0
Carub.0003s1138 Capsella rubella HOM05D007056 ORTHO05D008278 4.0e-97 358.6 249 71.1
CARHR086600 Cardamine hirsuta HOM05D007056 ORTHO05D008278 2.6e-96 355.9 246 70.7
AUR62011999 Chenopodium quinoa HOM05D007056 ORTHO05D008278 5.8e-96 354.8 256 67.2
A05p37300 Brassica napus HOM05D007056 ORTHO05D008278 7.6e-96 354.4 234 72.2
COL.COLO4_05956 Corchorus olitorius HOM05D007056 ORTHO05D008278 1.3e-95 353.6 282 65.2
Ah.04g152820 Amaranthus hybridus HOM05D007056 ORTHO05D008278 1.7e-95 353.2 262 66.8
HanXRQChr01g0010031 Helianthus annuus HOM05D007056 ORTHO05D008278 1.7e-95 353.2 261 67.4
Sp3g10270 Schrenkiella parvula HOM05D007056 ORTHO05D008278 1.7e-95 353.2 256 68.4
ATR0598G297 Amborella trichopoda HOM05D007056 ORTHO05D008278 4.9e-95 351.7 196 82.7
BraA05t22526Z Brassica rapa HOM05D007056 ORTHO05D008278 4.9e-95 351.7 266 66.2
BcaB06g25552 Brassica carinata HOM05D007056 ORTHO05D008278 1.4e-94 350.1 261 67.4
CAN.G128.50 Capsicum annuum HOM05D007056 ORTHO05D008278 1.9e-94 349.7 226 75.7
PGSC0003DMG400023706 Solanum tuberosum HOM05D007056 ORTHO05D008278 3.2e-94 349.0 258 68.6
THA.LOC104809936 Tarenaya hassleriana HOM05D007056 ORTHO05D008278 5.5e-94 348.2 229 70.3
GSVIVG01033475001 Vitis vinifera HOM05D007056 ORTHO05D008278 7.1e-94 347.8 278 65.5
BcaC05g29295 Brassica carinata HOM05D007056 ORTHO05D008278 9.3e-94 347.4 234 70.5
HPP92_004381 Vanilla planifolia HOM05D007056 ORTHO05D008278 9.3e-94 347.4 258 68.2
Solyc10g080560.2 Solanum lycopersicum HOM05D007056 ORTHO05D008278 1.6e-93 346.7 264 67.4
Sopen10g031100 Solanum pennellii HOM05D007056 ORTHO05D008278 2.7e-93 345.9 258 68.2
Nitab4.5_0001079g0030 Nicotiana tabacum HOM05D007056 ORTHO05D008278 6.0e-93 344.7 195 82.1
AUR62015338 Chenopodium quinoa HOM05D007056 ORTHO05D008278 7.9e-93 344.4 263 66.2
Thhalv10021378m.g Eutrema salsugineum HOM05D007056 ORTHO05D008278 1.0e-92 344.0 245 69.4
C05p55770 Brassica napus HOM05D007056 ORTHO05D008278 2.3e-92 342.8 235 70.2
BolC5t34244H Brassica oleracea HOM05D007056 ORTHO05D008278 2.3e-92 342.8 235 70.2
Rhsim04G0094900 Rhododendron simsii HOM05D007056 ORTHO05D008278 8.7e-92 340.9 272 64.7
Lsat_1_v5_gn_5_165300 Lactuca sativa HOM05D007056 ORTHO05D008278 1.9e-91 339.7 269 65.1
TPR.G35780 Trifolium pratense HOM05D007056 ORTHO05D008278 1.6e-90 336.7 255 67.5
DCAR_019779 Daucus carota HOM05D007056 ORTHO05D008278 4.8e-90 335.1 241 68.9
unitig_27.g25110 Utricularia gibba HOM05D007056 ORTHO05D008278 1.4e-89 333.6 251 65.3
Aa31sc80G100 Aethionema arabicum HOM05D007056 ORTHO05D008278 5.3e-89 331.6 225 70.7
CDE06G2434 Ceratophyllum demersum HOM05D007056 ORTHO05D008278 6.9e-89 331.3 255 63.5
Peaxi162Scf00249g01221 Petunia axillaris HOM05D007056 ORTHO05D008278 7.6e-88 327.8 269 63.2
SEGI_25756 Sequoiadendron giganteum HOM05D007056 ORTHO05D008278 8.4e-87 324.3 194 77.3
AagrBONN_evm.TU.Sc2ySwM_344.2853 Anthoceros agrestis HOM05D007056 ORTHO05D008278 6.1e-85 318.2 194 73.7
Hund24814 Selenicereus undatus HOM05D007056 ORTHO05D008278 1.8e-84 316.6 269 63.6
PSO541G5037 Papaver somniferum HOM05D007056 ORTHO05D008278 1.3e-82 310.5 269 61.3
PSO675G9168 Papaver somniferum HOM05D007056 ORTHO05D008278 2.2e-82 309.7 269 59.5
SMO146G0068 Selaginella moellendorffii HOM05D007056 ORTHO05D008278 2.2e-82 309.7 193 74.1
Mapoly0003s0280 Marchantia polymorpha HOM05D007056 ORTHO05D008278 1.4e-81 307.0 240 62.5
Aqoxy3G01855 Aquilegia oxysepala HOM05D007056 ORTHO05D008278 1.2e-80 303.9 268 59.0
Psat3g067120 Pisum sativum HOM05D007056 ORTHO05D008278 7.7e-80 301.2 167 81.4
ECA248G2501 Erigeron canadensis HOM05D007056 ORTHO05D008278 3.6e-77 292.4 209 68.4
Pp3c1_41490 Physcomitrium patens HOM05D007056 ORTHO05D008278 2.3e-76 289.7 267 55.8
vmacro22110 Vaccinium macrocarpon HOM05D007056 ORTHO05D008278 3.0e-76 289.3 346 48.8
BcaB06g25551 Brassica carinata HOM05D007056 ORTHO05D008278 5.1e-76 288.5 165 78.8
CBR_g48019 Chara braunii HOM05D000019 ORTHO05D000002 2.0e-75 286.6 186 69.9
Oeu024494.3 Olea europaea HOM05D007056 ORTHO05D008278 4.8e-74 282.0 295 54.6
FvH4_6g21980 Fragaria vesca HOM05D007056 ORTHO05D008278 2.4e-73 279.6 211 69.2
ECA248G2516 Erigeron canadensis HOM05D007056 ORTHO05D008278 1.3e-71 273.9 164 76.2
Sed0027134 Sechium edule HOM05D007056 ORTHO05D008278 3.6e-69 265.8 217 63.6
Gohir.A04G057300 Gossypium hirsutum HOM05D007056 ORTHO05D008278 7.2e-62 241.5 189 66.7
Psat3g067080 Pisum sativum HOM05D007056 ORTHO05D008278 1.7e-58 230.3 194 63.4
Psat3g067040 Pisum sativum HOM05D007056 ORTHO05D008278 3.7e-58 229.2 254 53.5
Manes.08G042900 Manihot esculenta HOM05D007056 ORTHO05D008278 1.2e-56 224.2 181 67.4
Migut.J01851 Erythranthe guttata HOM05D007056 ORTHO05D008278 1.7e-55 220.3 122 82.8
ClCG10G017660 Citrullus lanatus HOM05D007056 ORTHO05D008278 1.2e-53 214.2 214 54.7
MELO3C009610.2 Cucumis melo HOM05D007056 ORTHO05D008278 6.1e-53 211.8 264 48.9
Haze_20013 Corylus avellana HOM05D007056 ORTHO05D008278 6.3e-50 201.8 485 34.0
ECA248G3402 Erigeron canadensis HOM05D000009 ORTHO05D000008 8.3e-50 201.4 121 76.0
FAN02G0430 Fragaria x ananassa HOM05D007056 ORTHO05D008278 1.1e-49 201.1 167 66.5
Sc13g0002370 Simmondsia chinensis HOM05D007056 ORTHO05D008278 8.8e-44 181.4 110 76.4
Nitab4.5_0001440g0050 Nicotiana tabacum HOM05D007056 ORTHO05D008278 9.5e-38 161.4 94 77.7
PRCOL_00003183 Prasinoderma coloniale HOM05D007056 ORTHO05D008278 2.3e-36 156.8 215 44.7
Hma1.2p1_0645F.1_g194860 Hydrangea macrophylla HOM05D007056 ORTHO05D008278 5.4e-33 145.6 73 89.0
ECA233G2032 Erigeron canadensis HOM05D007056 ORTHO05D008278 3.6e-29 132.9 81 71.6
SHI31778 Sapria himalayana HOM05D007056 ORTHO05D008278 3.6e-29 132.9 76 76.3
vmacro22990 Vaccinium macrocarpon HOM05D007056 ORTHO05D008278 1.4e-17 94.4 96 53.1
SHI31775 Sapria himalayana HOM05D000002 ORTHO05D000001 4.4e-11 72.8 67 61.2


User provided reference genes

Program Settings