Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0049800 Salix brachista HOM05D004472 ORTHO05D007169 3.0e-262 907.9 443 100.0
Potri.016G045800 Populus trichocarpa HOM05D004472 ORTHO05D007169 5.9e-250 867.1 441 96.1
Potri.006G192400 Populus trichocarpa HOM05D004472 ORTHO05D007169 1.4e-235 819.3 441 89.8
Sabra06G0147500 Salix brachista HOM05D004472 ORTHO05D007169 5.6e-232 807.4 442 88.5
Manes.08G044600 Manihot esculenta HOM05D004472 ORTHO05D007169 1.6e-223 779.2 443 85.1
Prupe.7G076900 Prunus persica HOM05D004472 ORTHO05D007169 1.3e-217 759.6 443 82.2
TWI77G0336 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 1.3e-217 759.6 440 81.4
GSVIVG01033498001 Vitis vinifera HOM05D004472 ORTHO05D007169 1.9e-216 755.7 440 81.8
QL07p023729 Quercus lobata HOM05D004472 ORTHO05D007169 2.4e-214 748.8 442 80.5
Gohir.A04G055778 Gossypium hirsutum HOM05D004472 ORTHO05D007169 6.9e-214 747.3 440 82.3
MD12G1057200 Malus domestica HOM05D004472 ORTHO05D007169 6.9e-214 747.3 443 81.0
Hma1.2p1_0386F.1_g141865 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 2.6e-213 745.3 443 81.3
MD14G1057800 Malus domestica HOM05D004472 ORTHO05D007169 7.6e-213 743.8 439 81.1
Cpa.g.sc85.67 Carica papaya HOM05D004472 ORTHO05D007169 9.9e-213 743.4 439 80.9
TWI74G0546 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 1.3e-212 743.0 443 79.9
TAR623G1736 Trochodendron aralioides HOM05D004472 ORTHO05D007169 1.3e-212 743.0 443 81.0
Actinidia22035 Actinidia chinensis HOM05D004472 ORTHO05D007169 3.8e-212 741.5 443 81.0
CSS0032720 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 2.4e-211 738.8 440 80.7
CiPaw.10G026500 Carya illinoinensis HOM05D004472 ORTHO05D007169 2.4e-211 738.8 442 79.6
CsaV3_3G038830 Cucumis sativus L. HOM05D004472 ORTHO05D007169 9.3e-211 736.9 438 78.1
Gorai.012G101400 Gossypium raimondii HOM05D004472 ORTHO05D007169 1.6e-210 736.1 440 80.9
Eucgr.K01838 Eucalyptus grandis HOM05D004472 ORTHO05D007169 3.5e-210 734.9 438 82.4
Atru.chr8.1111 Acer truncatum HOM05D004472 ORTHO05D007169 7.8e-210 733.8 438 80.6
COL.COLO4_33983 Corchorus olitorius HOM05D004472 ORTHO05D007169 1.3e-209 733.0 438 80.8
Dinv24072 Davidia involucrata HOM05D004472 ORTHO05D007169 1.7e-209 732.6 440 81.1
Gohir.D04G090500 Gossypium hirsutum HOM05D004472 ORTHO05D007169 1.7e-209 732.6 440 80.7
CSS0031939 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 3.3e-208 728.4 440 79.8
THA.LOC104824475 Tarenaya hassleriana HOM05D004472 ORTHO05D007169 3.6e-207 724.9 437 79.9
Ca_08520_v3 Cicer arietinum L. HOM05D004472 ORTHO05D007169 4.0e-206 721.5 430 78.6
arahy.Tifrunner.gnm1.ann1.VM941Y Arachis hypogaea HOM05D004472 ORTHO05D007169 1.2e-205 719.9 441 77.6
CANSAT64G0932 Cannabis sativa HOM05D004472 ORTHO05D007169 3.4e-205 718.4 440 79.8
SGA_v2.0_scaffold69G23061 Striga asiatica HOM05D004472 ORTHO05D007169 5.8e-205 717.6 439 77.4
Sc25g0005090 Simmondsia chinensis HOM05D004472 ORTHO05D007169 7.6e-205 717.2 458 75.5
arahy.Tifrunner.gnm1.ann1.W50LA9 Arachis hypogaea HOM05D004472 ORTHO05D007169 1.3e-204 716.5 441 77.1
Thhalv10016664m.g Eutrema salsugineum HOM05D004472 ORTHO05D007169 4.9e-204 714.5 441 76.9
MSTRG.6484 Avicennia marina HOM05D004472 ORTHO05D007169 6.4e-204 714.1 441 78.0
Glyma.03G144600 Glycine max HOM05D004472 ORTHO05D007169 1.1e-203 713.4 432 78.2
Glyma.19G147500 Glycine max HOM05D004472 ORTHO05D007169 3.2e-203 711.8 432 77.5
Lj1g0006426 Lotus japonicus HOM05D004472 ORTHO05D007169 5.4e-203 711.1 434 78.1
RcHm_v2.0_Chr3g0479691 Rosa chinensis HOM05D004472 ORTHO05D007169 7.1e-203 710.7 437 77.8
Nn3g18269 Nelumbo nucifera HOM05D004472 ORTHO05D007169 2.7e-202 708.8 436 78.9
TPR.G18209 Trifolium pratense HOM05D004472 ORTHO05D007169 3.5e-202 708.4 430 77.9
AT2G42120 Arabidopsis thaliana HOM05D004472 ORTHO05D007169 6.0e-202 707.6 438 76.5
EL10Ac3g06916 Beta vulgaris HOM05D004472 ORTHO05D007169 1.3e-201 706.4 438 75.8
Aa31LG1G24100 Aethionema arabicum HOM05D004472 ORTHO05D007169 1.8e-201 706.1 446 75.6
Lalb_Chr15g0079011 Lupinus albus HOM05D004472 ORTHO05D007169 3.9e-201 704.9 440 75.5
Sopen03g016030 Solanum pennellii HOM05D004472 ORTHO05D007169 3.9e-201 704.9 444 76.8
Sed0018995 Sechium edule HOM05D004472 ORTHO05D007169 6.7e-201 704.1 438 74.4
Aqoxy1G00476 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 2.5e-200 702.2 436 75.9
Migut.J01839 Erythranthe guttata HOM05D004472 ORTHO05D007169 3.3e-200 701.8 441 75.7
CAN.G273.20 Capsicum annuum HOM05D004472 ORTHO05D007169 9.6e-200 700.3 444 75.2
Medtr7g093210 Medicago truncatula HOM05D004472 ORTHO05D007169 9.6e-200 700.3 426 77.9
ECA248G2191 Erigeron canadensis HOM05D004472 ORTHO05D007169 1.3e-199 699.9 441 76.0
BcaB06g29226 Brassica carinata HOM05D004472 ORTHO05D007169 2.1e-199 699.1 437 76.4
AL4G40490 Arabidopsis lyrata HOM05D004472 ORTHO05D007169 2.8e-199 698.7 439 75.6
A04p32010 Brassica napus HOM05D004472 ORTHO05D007169 6.2e-199 697.6 440 75.9
FvH4_6g22330 Fragaria vesca HOM05D004472 ORTHO05D007169 8.1e-199 697.2 441 75.5
HanXRQChr13g0390871 Helianthus annuus HOM05D004472 ORTHO05D007169 8.1e-199 697.2 443 75.8
Sp4g24330 Schrenkiella parvula HOM05D004472 ORTHO05D007169 8.1e-199 697.2 441 75.3
PGR142G1378 Punica granatum HOM05D004472 ORTHO05D007169 1.8e-198 696.0 443 75.4
Rhsim03G0006000 Rhododendron simsii HOM05D004472 ORTHO05D007169 3.1e-198 695.3 423 79.7
BraA04t18658Z Brassica rapa HOM05D004472 ORTHO05D007169 2.6e-197 692.2 437 75.7
BcaC02g07263 Brassica carinata HOM05D004472 ORTHO05D007169 2.2e-196 689.1 438 75.6
Hund19203 Selenicereus undatus HOM05D004472 ORTHO05D007169 2.9e-196 688.7 427 76.3
Thecc.05G171300 Theobroma cacao HOM05D004472 ORTHO05D007169 2.9e-196 688.7 396 82.3
FAN14G1969 Fragaria x ananassa HOM05D004472 ORTHO05D007169 8.4e-196 687.2 451 73.8
C04p69510 Brassica napus HOM05D004472 ORTHO05D007169 2.5e-195 685.6 437 75.1
Carub.0004s2446 Capsella rubella HOM05D004472 ORTHO05D007169 2.5e-195 685.6 437 75.5
Phvul.001G143200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 3.2e-195 685.3 432 75.7
BolC4t28450H Brassica oleracea HOM05D004472 ORTHO05D007169 6.0e-194 681.0 438 74.9
PSO339G4742 Papaver somniferum HOM05D004472 ORTHO05D007169 7.9e-194 680.6 438 74.9
Psat3g068520 Pisum sativum HOM05D004472 ORTHO05D007169 3.9e-193 678.3 417 76.3
FAN05G5703 Fragaria x ananassa HOM05D004472 ORTHO05D007169 6.7e-193 677.6 441 74.8
Solyc03g063340.3 Solanum lycopersicum HOM05D004472 ORTHO05D007169 1.5e-192 676.4 425 76.7
PSO384G4825 Papaver somniferum HOM05D004472 ORTHO05D007169 8.2e-191 670.6 438 74.0
Nitab4.5_0001137g0080 Nicotiana tabacum HOM05D004472 ORTHO05D007169 2.4e-190 669.1 442 73.3
Lj2C366G13 Lonicera japonica HOM05D004472 ORTHO05D007169 4.0e-190 668.3 421 76.2
DCAR_017009 Daucus carota HOM05D004472 ORTHO05D007169 6.9e-190 667.5 423 74.7
Phvul.001G142200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 3.4e-189 665.2 432 73.6
Oeu007762.1 Olea europaea HOM05D004472 ORTHO05D007169 5.8e-189 664.5 429 75.1
FAN02G0232 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.0e-188 663.7 467 70.4
VMungo1383G3660 Vigna mungo HOM05D004472 ORTHO05D007169 4.2e-187 658.3 414 75.6
CSS0048424 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 2.1e-186 656.0 454 72.2
FAN09G4048 Fragaria x ananassa HOM05D004472 ORTHO05D007169 3.5e-186 655.2 451 71.6
Lsat_1_v5_gn_5_163440 Lactuca sativa HOM05D004472 ORTHO05D007169 1.0e-185 653.7 426 73.7
Os03g0128500 Oryza sativa ssp. japonica HOM05D004472 ORTHO05D007169 3.3e-184 648.7 433 70.9
Nitab4.5_0007619g0020 Nicotiana tabacum HOM05D004472 ORTHO05D007169 1.4e-182 643.3 424 73.6
Zm00001eb002170 Zea mays HOM05D004472 ORTHO05D007169 4.1e-182 641.7 432 70.4
Ah.13g075820 Amaranthus hybridus HOM05D004472 ORTHO05D007169 1.1e-179 633.6 408 75.2
Haze_19988 Corylus avellana HOM05D004472 ORTHO05D007169 1.9e-179 632.9 499 64.7
vmacro07908 Vaccinium macrocarpon HOM05D004472 ORTHO05D007169 6.7e-177 624.4 473 67.2
ClCG10G017520 Citrullus lanatus HOM05D004472 ORTHO05D007169 6.3e-175 617.8 447 67.6
SEGI_25790 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 1.4e-169 600.1 441 64.6
HPP92_018591 Vanilla planifolia HOM05D004472 ORTHO05D007169 1.5e-168 596.7 434 64.5
Sed0005670 Sechium edule HOM05D004472 ORTHO05D007169 1.8e-166 589.7 364 77.7
MELO3C030998.2 Cucumis melo HOM05D004472 ORTHO05D007169 2.4e-166 589.3 538 57.4
Haze_19990 Corylus avellana HOM05D004472 ORTHO05D007169 2.0e-165 586.3 472 63.3
CDE04G2547 Ceratophyllum demersum HOM05D004472 ORTHO05D007169 1.9e-163 579.7 393 71.0
PGSC0003DMG400014974 Solanum tuberosum HOM05D004472 ORTHO05D007169 1.4e-161 573.5 356 78.4
HPP92_006516 Vanilla planifolia HOM05D004472 ORTHO05D007169 2.3e-161 572.8 479 58.9
Duzib128G1617 Durio zibethinus HOM05D004472 ORTHO05D007169 7.4e-160 567.8 440 65.9
SalBow6G5437 Salvia bowleyana HOM05D004472 ORTHO05D007169 1.7e-159 566.6 421 67.0
ATR0807G137 Amborella trichopoda HOM05D004472 ORTHO05D007169 3.1e-158 562.4 375 70.4
AUR62015368 Chenopodium quinoa HOM05D004472 ORTHO05D007169 2.0e-152 543.1 438 62.8
SMO111G0006 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 4.2e-147 525.4 435 57.5
Mapoly0039s0092 Marchantia polymorpha HOM05D004472 ORTHO05D007169 4.7e-146 521.9 438 58.0
Aqoxy2G02978 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 8.0e-146 521.2 464 58.6
Pp3c3_28090 Physcomitrium patens HOM05D004472 ORTHO05D007169 2.3e-145 519.6 440 56.4
AUR62012036 Chenopodium quinoa HOM05D004472 ORTHO05D007169 9.8e-144 514.2 421 62.0
AagrBONN_evm.TU.Sc2ySwM_362.678 Anthoceros agrestis HOM05D004472 ORTHO05D007169 2.3e-140 503.1 462 54.1
SMO339G0063 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 9.8e-136 487.6 431 54.3
CBR_g38861 Chara braunii HOM05D004472 ORTHO05D000002 8.0e-130 468.0 435 53.3
CBR_g63079 Chara braunii HOM05D004472 ORTHO05D007169 1.1e-123 447.6 410 54.1
CARHR137180 Cardamine hirsuta HOM05D004472 ORTHO05D007169 5.8e-120 435.3 270 75.9
MBI06_g29494_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 7.8e-109 398.3 246 74.4
Ciclev10012551m.g Citrus clementina HOM05D004472 ORTHO05D007169 1.0e-108 397.9 244 80.3
SHI42174 Sapria himalayana HOM05D004472 ORTHO05D007169 4.8e-98 362.5 287 64.5
Ciclev10012767m.g Citrus clementina HOM05D004472 ORTHO05D007169 7.6e-96 355.1 196 83.2
Hma1.2p1_0386F.1_g141870 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 1.6e-93 347.4 196 82.1
MCO03G010 Micromonas commoda HOM05D004472 ORTHO05D007169 6.0e-93 345.5 452 42.0
PRCOL_00001477 Prasinoderma coloniale HOM05D004472 ORTHO05D007169 6.6e-92 342.0 385 42.3
Cre08.g374050 Chlamydomonas reinhardtii HOM05D004472 ORTHO05D007169 5.6e-91 339.0 504 38.1
Peaxi162Scf00258g00730 Petunia axillaris HOM05D004472 ORTHO05D007169 4.0e-89 332.8 243 70.8
MBI06_g29491_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 2.4e-65 253.8 157 77.7
SHI33668 Sapria himalayana HOM05D004472 ORTHO05D007169 1.7e-63 247.7 194 66.0
SEGI_31079 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 3.0e-52 210.3 201 52.2
BcaNung04407 Brassica carinata HOM05D004472 ORTHO05D007169 4.1e-49 199.9 247 46.6
Lsat_1_v5_gn_5_163500 Lactuca sativa HOM05D004472 ORTHO05D007169 9.1e-49 198.7 184 56.5
Haze_26548 Corylus avellana HOM05D005705 ORTHO05D007152 1.2e-48 198.4 419 32.0
BcaNung06765 Brassica carinata HOM05D004472 ORTHO05D027254 9.1e-41 172.2 141 60.3
Peaxi162Scf00258g00729 Petunia axillaris HOM05D004472 ORTHO05D007169 7.7e-40 169.1 95 76.8
BcaC04g21709 Brassica carinata HOM05D004472 ORTHO05D013781 4.2e-38 163.3 152 52.6
BcaC03g16493 Brassica carinata HOM05D004472 ORTHO05D013781 5.5e-38 162.9 185 48.1
A02p27200 Brassica napus HOM05D004472 ORTHO05D013781 5.5e-38 162.9 113 62.8
SEGI_39608 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 3.0e-36 157.1 132 57.6
BcaB02g11100 Brassica carinata HOM05D004472 ORTHO05D027254 1.2e-32 145.2 145 53.8
A09p46770 Brassica napus HOM05D004472 ORTHO05D013781 1.0e-28 132.1 86 64.0
BolC9t55720H Brassica oleracea HOM05D004472 ORTHO05D013781 1.8e-28 131.3 96 60.4
BcaC01g04270 Brassica carinata HOM05D004472 ORTHO05D013781 3.4e-27 127.1 125 52.0
BcaC02g12460 Brassica carinata HOM05D004472 ORTHO05D013781 4.1e-25 120.2 106 57.5
BcaC05g24672 Brassica carinata HOM05D004472 ORTHO05D027254 1.2e-21 108.6 132 49.2
SEGI_06501 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 2.1e-21 107.8 113 47.8
BcaNung00145 Brassica carinata HOM05D004472 ORTHO05D013781 1.2e-19 102.1 121 43.8
CARHR228030 Cardamine hirsuta HOM05D004472 ORTHO05D039758 1.1e-17 95.5 67 73.1
BcaB02g11125 Brassica carinata HOM05D004472 ORTHO05D039758 1.3e-15 88.6 65 70.8
C03p43020 Brassica napus HOM05D004472 ORTHO05D013781 9.5e-14 82.4 66 56.1
CARHR228020 Cardamine hirsuta HOM05D004472 ORTHO05D007169 8.0e-13 79.3 64 62.5
SMO364G0765 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 6.8e-12 76.3 43 81.4
BolC3t16570H Brassica oleracea HOM05D004472 ORTHO05D013781 7.0e-09 66.2 55 60.0
BraA07t27940Z Brassica rapa HOM05D004472 ORTHO05D013781 7.0e-09 66.2 55 60.0
BraA06t25637Z Brassica rapa HOM05D004472 ORTHO05D013781 1.6e-08 65.1 53 60.4
BcaB06g25539 Brassica carinata HOM05D004472 ORTHO05D094557 2.0e-08 64.7 82 42.7
BraA08t32859Z Brassica rapa HOM05D004472 ORTHO05D027254 3.0e-07 60.8 51 58.8


User provided reference genes

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