Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0047800 Salix brachista HOM05D003740 ORTHO05D004611 2.2e-225 785.4 433 100.0
Potri.006G045700 Populus trichocarpa HOM05D003740 ORTHO05D004611 5.0e-217 757.7 433 91.7
Potri.016G042100 Populus trichocarpa HOM05D003740 ORTHO05D004611 2.9e-209 731.9 427 95.8
Manes.08G053600 Manihot esculenta HOM05D003740 ORTHO05D004611 4.2e-192 674.9 392 84.7
Ciclev10005020m.g Citrus clementina HOM05D003740 ORTHO05D004611 3.7e-188 661.8 392 82.7
TWI53G1619 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 7.7e-186 654.1 392 81.9
TWI77G0796 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 1.7e-185 652.9 390 82.3
MELO3C014202.2 Cucumis melo HOM05D003740 ORTHO05D004611 5.0e-185 651.4 392 81.4
CsaV3_4G027630 Cucumis sativus L. HOM05D003740 ORTHO05D004611 5.0e-185 651.4 392 81.4
TWI74G0940 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 1.1e-184 650.2 392 81.1
ClCG04G004010 Citrullus lanatus HOM05D003740 ORTHO05D004611 4.2e-184 648.3 392 80.9
Medtr3g045150 Medicago truncatula HOM05D003740 ORTHO05D004611 7.2e-184 647.5 392 81.1
Thecc.05G145300 Theobroma cacao HOM05D003740 ORTHO05D004611 9.4e-184 647.1 392 81.9
Sed0013360 Sechium edule HOM05D003740 ORTHO05D004611 1.2e-183 646.7 392 81.1
Sed0006234 Sechium edule HOM05D003740 ORTHO05D004611 2.1e-183 646.0 392 80.4
GSVIVG01033552001 Vitis vinifera HOM05D003740 ORTHO05D004611 3.6e-183 645.2 389 82.0
Atru.chr6.1381 Acer truncatum HOM05D003740 ORTHO05D004611 4.7e-183 644.8 392 81.1
Gohir.A09G119800 Gossypium hirsutum HOM05D003740 ORTHO05D004611 8.0e-183 644.0 392 81.4
Gohir.D09G116000 Gossypium hirsutum HOM05D003740 ORTHO05D004611 1.0e-182 643.7 392 81.4
Medtr0012s0090 Medicago truncatula HOM05D003740 ORTHO05D004611 1.0e-182 643.7 392 80.6
Prupe.7G050100 Prunus persica HOM05D003740 ORTHO05D004611 5.2e-182 641.3 392 80.1
Eucgr.A02296 Eucalyptus grandis HOM05D003740 ORTHO05D004611 1.2e-181 640.2 392 80.4
QL07p005086 Quercus lobata HOM05D003740 ORTHO05D004611 1.2e-181 640.2 391 81.1
Gorai.006G134300 Gossypium raimondii HOM05D003740 ORTHO05D004611 3.4e-181 638.6 389 81.5
TPR.G19664 Trifolium pratense HOM05D003740 ORTHO05D004611 7.5e-181 637.5 392 80.1
MD12G1086200 Malus domestica HOM05D003740 ORTHO05D004611 9.8e-181 637.1 392 80.1
Glyma.02G190700 Glycine max HOM05D003740 ORTHO05D004611 1.3e-180 636.7 392 79.6
VMungo0720G0943 Vigna mungo HOM05D003740 ORTHO05D004611 1.3e-180 636.7 392 79.6
Ca_25790_v3 Cicer arietinum L. HOM05D003740 ORTHO05D004611 1.7e-180 636.3 392 78.8
Lalb_Chr21g0316601 Lupinus albus HOM05D003740 ORTHO05D004611 1.7e-180 636.3 392 79.3
PGR004G2716 Punica granatum HOM05D003740 ORTHO05D004611 1.7e-180 636.3 386 80.6
Dinv05312 Davidia involucrata HOM05D003740 ORTHO05D004611 3.7e-180 635.2 392 80.9
Lj5g0015883 Lotus japonicus HOM05D003740 ORTHO05D004611 1.1e-179 633.6 392 79.1
Rhsim03G0031000 Rhododendron simsii HOM05D003740 ORTHO05D004611 1.1e-179 633.6 392 80.1
Dinv34246 Davidia involucrata HOM05D003740 ORTHO05D004611 1.8e-179 632.9 392 80.1
Actinidia39193 Actinidia chinensis HOM05D003740 ORTHO05D004611 2.4e-179 632.5 392 79.8
MD14G1080600 Malus domestica HOM05D003740 ORTHO05D004611 2.4e-179 632.5 393 79.6
Glyma.10G105900 Glycine max HOM05D003740 ORTHO05D004611 3.1e-179 632.1 389 79.2
Prupe.1G032300 Prunus persica HOM05D003740 ORTHO05D004611 3.1e-179 632.1 392 79.3
arahy.Tifrunner.gnm1.ann1.0DR8LC Arachis hypogaea HOM05D003740 ORTHO05D004611 5.4e-179 631.3 392 79.1
Psat6g118200 Pisum sativum HOM05D003740 ORTHO05D004611 1.2e-178 630.2 392 79.1
CSS0019779 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 2.7e-178 629.0 392 79.1
Cfa016754 Carpinus fangiana HOM05D003740 ORTHO05D004611 2.7e-178 629.0 394 79.2
Haze_19750 Corylus avellana HOM05D003740 ORTHO05D004611 3.5e-178 628.6 394 79.2
arahy.Tifrunner.gnm1.ann1.G7Z7YE Arachis hypogaea HOM05D003740 ORTHO05D004611 7.7e-178 627.5 393 78.9
RcHm_v2.0_Chr3g0484361 Rosa chinensis HOM05D003740 ORTHO05D004611 7.7e-178 627.5 392 78.8
Peaxi162Scf00130g01015 Petunia axillaris HOM05D003740 ORTHO05D004611 1.3e-177 626.7 392 78.3
Sopen04g008590 Solanum pennellii HOM05D003740 ORTHO05D004611 2.3e-177 625.9 392 78.8
Lalb_Chr02g0156411 Lupinus albus HOM05D003740 ORTHO05D004611 2.9e-177 625.5 392 78.1
Phvul.007G249500 Phaseolus vulgaris HOM05D003740 ORTHO05D004611 2.9e-177 625.5 392 78.6
MSTRG.26143 Avicennia marina HOM05D003740 ORTHO05D004611 7.2e-176 620.9 390 79.2
FAN09G1292 Fragaria x ananassa HOM05D003740 ORTHO05D004611 7.2e-176 620.9 392 78.3
FAN05G1357 Fragaria x ananassa HOM05D003740 ORTHO05D004611 9.5e-176 620.5 392 78.3
FvH4_6g24760 Fragaria vesca HOM05D003740 ORTHO05D004611 1.2e-175 620.2 392 78.3
MSTRG.10801 Avicennia marina HOM05D003740 ORTHO05D004611 1.6e-175 619.8 392 78.1
Nn6g34910 Nelumbo nucifera HOM05D003740 ORTHO05D004611 2.8e-175 619.0 392 77.8
THA.LOC104816968 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 8.0e-175 617.5 392 76.5
Actinidia38142 Actinidia chinensis HOM05D003740 ORTHO05D004611 1.0e-174 617.1 390 79.2
CiPaw.09G042200 Carya illinoinensis HOM05D003740 ORTHO05D004611 1.4e-174 616.7 394 78.7
AT2G41490 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 2.0e-173 612.8 389 76.9
Sp4g23760 Schrenkiella parvula HOM05D003740 ORTHO05D004611 2.0e-173 612.8 392 76.5
THA.LOC104803288 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 2.0e-173 612.8 392 76.8
Nn7g37216 Nelumbo nucifera HOM05D003740 ORTHO05D004611 2.6e-173 612.5 392 77.3
AL4G39580 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 5.7e-173 611.3 389 76.9
CARHR136610 Cardamine hirsuta HOM05D003740 ORTHO05D004611 9.8e-173 610.5 389 76.9
A05p02310 Brassica napus HOM05D003740 ORTHO05D004611 1.3e-172 610.1 389 77.4
BraA05t19226Z Brassica rapa HOM05D003740 ORTHO05D004611 1.7e-172 609.8 389 77.4
FAN02G1973 Fragaria x ananassa HOM05D003740 ORTHO05D004611 1.7e-172 609.8 409 75.1
Atru.chr1.1193 Acer truncatum HOM05D003740 ORTHO05D004611 2.2e-172 609.4 374 81.3
Migut.K00119 Erythranthe guttata HOM05D003740 ORTHO05D004611 3.7e-172 608.6 392 76.3
BolC4t21915H Brassica oleracea HOM05D003740 ORTHO05D004611 6.3e-172 607.8 389 77.1
RcHm_v2.0_Chr3g0484511 Rosa chinensis HOM05D003740 ORTHO05D004611 1.1e-171 607.1 392 77.3
AL5G38710 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 1.4e-171 606.7 392 76.0
HanXRQChr10g0277771 Helianthus annuus HOM05D003740 ORTHO05D004611 1.8e-171 606.3 389 76.6
BolC8t50867H Brassica oleracea HOM05D003740 ORTHO05D004611 2.4e-171 605.9 392 76.3
AT3G57220 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 3.1e-171 605.5 392 75.8
Thhalv10016688m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 3.1e-171 605.5 391 76.0
Carub.0004s2379 Capsella rubella HOM05D003740 ORTHO05D004611 4.1e-171 605.1 389 75.6
C04p02750 Brassica napus HOM05D003740 ORTHO05D004611 5.4e-171 604.7 389 76.9
C08p32520 Brassica napus HOM05D003740 ORTHO05D004611 7.0e-171 604.4 392 76.0
Duzib128G1723 Durio zibethinus HOM05D003740 ORTHO05D004611 7.0e-171 604.4 372 80.1
BcaC02g09904 Brassica carinata HOM05D003740 ORTHO05D004611 9.2e-171 604.0 392 75.5
A09p50150 Brassica napus HOM05D003740 ORTHO05D004611 9.2e-171 604.0 392 75.8
C04p35340 Brassica napus HOM05D003740 ORTHO05D004611 9.2e-171 604.0 392 75.5
BolC4t25088H Brassica oleracea HOM05D003740 ORTHO05D004611 9.2e-171 604.0 392 75.5
BraA09t40467Z Brassica rapa HOM05D003740 ORTHO05D004611 9.2e-171 604.0 392 75.8
Migut.J01706 Erythranthe guttata HOM05D003740 ORTHO05D004611 9.2e-171 604.0 392 77.3
PSO339G5696 Papaver somniferum HOM05D003740 ORTHO05D004611 9.2e-171 604.0 381 78.2
PSO384G1999 Papaver somniferum HOM05D003740 ORTHO05D004611 9.2e-171 604.0 381 78.2
Carub.0005s2403 Capsella rubella HOM05D003740 ORTHO05D004611 1.2e-170 603.6 392 76.3
Thhalv10007732m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 1.6e-170 603.2 392 76.0
BcaNung06793 Brassica carinata HOM05D003740 ORTHO05D004611 2.7e-170 602.4 389 76.9
Solyc04g016520.3 Solanum lycopersicum HOM05D003740 ORTHO05D004611 2.7e-170 602.4 392 77.0
Thhalv10005999m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 7.8e-170 600.9 392 75.8
Ah.13g076780 Amaranthus hybridus HOM05D003740 ORTHO05D004611 1.0e-169 600.5 381 79.0
EL10Ac3g07158 Beta vulgaris HOM05D003740 ORTHO05D004611 1.3e-169 600.1 390 77.7
BcaB02g08329 Brassica carinata HOM05D003740 ORTHO05D004611 2.9e-169 599.0 392 75.0
BraA04t16052Z Brassica rapa HOM05D003740 ORTHO05D004611 2.9e-169 599.0 392 75.3
PGSC0003DMG400012722 Solanum tuberosum HOM05D003740 ORTHO05D004611 5.0e-169 598.2 392 77.0
unitig_748.g7227 Utricularia gibba HOM05D003740 ORTHO05D004611 1.1e-168 597.0 392 76.0
Aa31LG1G23510 Aethionema arabicum HOM05D003740 ORTHO05D004611 1.9e-168 596.3 389 75.3
Oeu006922.2 Olea europaea HOM05D003740 ORTHO05D004611 3.3e-168 595.5 393 76.1
SGA_v2.0_scaffold105G30359 Striga asiatica HOM05D003740 ORTHO05D004611 2.8e-167 592.4 372 78.8
FAN14G5242 Fragaria x ananassa HOM05D003740 ORTHO05D004611 3.6e-167 592.0 374 78.3
Rhsim04G0107900 Rhododendron simsii HOM05D003740 ORTHO05D004611 4.7e-167 591.7 367 80.1
Cc06_g18360 Coffea canephora HOM05D003740 ORTHO05D004611 3.1e-166 589.0 392 75.0
TAR636G0750 Trochodendron aralioides HOM05D003740 ORTHO05D004611 1.2e-165 587.0 374 78.9
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 2.0e-165 586.3 377 75.6
CANSAT80G1617 Cannabis sativa HOM05D003740 ORTHO05D004611 4.4e-165 585.1 389 73.3
CSS0009879 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 5.8e-165 584.7 393 75.6
Sc13g0001500 Simmondsia chinensis HOM05D003740 ORTHO05D004611 5.8e-165 584.7 363 79.1
DCAR_020539 Daucus carota HOM05D003740 ORTHO05D004611 9.8e-165 583.9 371 77.6
Lj1A1122T44 Lonicera japonica HOM05D003740 ORTHO05D004611 2.7e-162 575.9 389 74.6
MBI13_g04792_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 2.7e-162 575.9 369 77.0
Lsat_1_v5_gn_6_15201 Lactuca sativa HOM05D003740 ORTHO05D004611 4.6e-162 575.1 372 76.3
Aa31LG10G12120 Aethionema arabicum HOM05D003740 ORTHO05D004611 1.0e-161 573.9 440 67.3
AUR62026121 Chenopodium quinoa HOM05D003740 ORTHO05D004611 1.0e-161 573.9 381 75.9
Aqoxy2G02041 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 1.7e-161 573.2 392 72.7
Duzib106G0923 Durio zibethinus HOM05D003740 ORTHO05D004611 2.3e-161 572.8 392 73.5
AUR62024529 Chenopodium quinoa HOM05D003740 ORTHO05D004611 3.0e-161 572.4 382 74.9
CANSAT80G1359 Cannabis sativa HOM05D003740 ORTHO05D004611 6.6e-161 571.2 367 75.5
CAN.G1237.3 Capsicum annuum HOM05D003740 ORTHO05D004611 1.2e-159 567.0 335 82.7
CDE08G1337 Ceratophyllum demersum HOM05D003740 ORTHO05D004611 1.6e-159 566.6 354 78.2
TPR.G2316 Trifolium pratense HOM05D003740 ORTHO05D004611 3.6e-159 565.5 392 71.9
A04p03820 Brassica napus HOM05D003740 ORTHO05D004611 2.0e-157 559.7 392 71.7
COL.COLO4_21300 Corchorus olitorius HOM05D003740 ORTHO05D004611 5.8e-157 558.1 379 75.2
SEGI_04340 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 5.8e-157 558.1 392 69.9
Lj2A390G27 Lonicera japonica HOM05D003740 ORTHO05D004611 1.9e-155 553.1 374 74.9
SalBow1G2954 Salvia bowleyana HOM05D003740 ORTHO05D004611 1.6e-154 550.1 422 68.7
Nitab4.5_0000826g0260 Nicotiana tabacum HOM05D003740 ORTHO05D004611 3.3e-152 542.3 402 70.1
Zm00001eb110840 Zea mays HOM05D003740 ORTHO05D004611 1.1e-150 537.3 389 67.6
Zm00001eb329870 Zea mays HOM05D003740 ORTHO05D004611 1.2e-149 533.9 375 69.9
Os07g0661100 Oryza sativa ssp. japonica HOM05D003740 ORTHO05D004611 6.4e-148 528.1 373 68.4
BcaC07g40064 Brassica carinata HOM05D003740 ORTHO05D004611 3.5e-146 522.3 322 78.9
Hund19125 Selenicereus undatus HOM05D003740 ORTHO05D004611 1.9e-144 516.5 400 68.8
DCAR_016970 Daucus carota HOM05D003740 ORTHO05D004611 1.8e-142 510.0 378 69.8
TAR633G2274 Trochodendron aralioides HOM05D003740 ORTHO05D004611 2.4e-142 509.6 320 79.1
SMO364G0515 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 1.9e-139 500.0 374 65.5
Pp3c2_18380 Physcomitrium patens HOM05D003740 ORTHO05D004611 7.8e-138 494.6 388 64.9
SHI12878 Sapria himalayana HOM05D003740 ORTHO05D004611 2.3e-137 493.0 372 67.2
ATR0782G053 Amborella trichopoda HOM05D003740 ORTHO05D004611 6.6e-137 491.5 319 75.9
Medtr8g446850 Medicago truncatula HOM05D003740 ORTHO05D004611 1.3e-135 487.3 333 73.3
Mapoly0120s0027 Marchantia polymorpha HOM05D003740 ORTHO05D004611 3.1e-134 482.6 399 60.4
RcHm_v2.0_Chr3g0484421 Rosa chinensis HOM05D003740 ORTHO05D004611 8.4e-132 474.6 416 62.7
CARHR167400 Cardamine hirsuta HOM05D003740 ORTHO05D004611 1.5e-128 463.8 297 77.1
TPR.G11551 Trifolium pratense HOM05D003740 ORTHO05D004611 1.8e-126 456.8 395 63.0
AagrBONN_evm.TU.Sc2ySwM_344.2027 Anthoceros agrestis HOM05D003740 ORTHO05D004611 3.1e-126 456.1 406 58.1
AUR62004393 Chenopodium quinoa HOM05D003740 ORTHO05D004611 9.6e-120 434.5 372 62.1
vmacro09044 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 1.6e-114 417.2 241 85.1
AUR62022599 Chenopodium quinoa HOM05D003740 ORTHO05D004611 7.4e-112 408.3 335 63.0
SMO112G0012 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 4.2e-107 392.5 271 70.8
Sp5g05360 Schrenkiella parvula HOM05D003740 ORTHO05D004611 9.0e-102 374.8 231 78.8
Cre16.g663100 Chlamydomonas reinhardtii HOM05D003740 ORTHO05D004611 6.7e-97 358.6 383 50.7
CiPaw.10G036600 Carya illinoinensis HOM05D003740 ORTHO05D004611 4.8e-95 352.4 211 82.9
AagrBONN_evm.TU.Sc2ySwM_368.1663 Anthoceros agrestis HOM05D003740 ORTHO05D004611 7.9e-90 335.1 410 45.9
PRCOL_00006546 Prasinoderma coloniale HOM05D003740 ORTHO05D004611 2.6e-88 330.1 391 48.3
CBR_g48687 Chara braunii HOM05D003740 ORTHO05D004611 8.0e-82 308.5 273 57.1
SEGI_25729 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 3.3e-80 303.1 196 74.0
SGA_v2.0_scaffold69G23130 Striga asiatica HOM05D003740 ORTHO05D004611 5.5e-75 285.8 318 53.5
Cpa.g.sc120.7 Carica papaya HOM05D003740 ORTHO05D004611 4.1e-70 269.6 151 85.4
Haze_26500 Corylus avellana HOM05D003740 ORTHO05D004611 2.2e-63 247.3 405 39.3
MCO05G206 Micromonas commoda HOM05D003740 ORTHO05D004611 9.1e-62 241.9 302 45.4
Aqoxy6G01654 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 5.9e-61 239.2 222 57.2
HPP92_001282 Vanilla planifolia HOM05D003740 ORTHO05D004611 1.1e-54 218.4 214 54.7
Cfa024885 Carpinus fangiana HOM05D003740 ORTHO05D004611 6.6e-52 209.1 304 40.8
Actinidia17677 Actinidia chinensis HOM05D003740 ORTHO05D004611 3.1e-49 200.3 391 37.9
Psat6g050760 Pisum sativum HOM05D003740 ORTHO05D018044 5.4e-46 189.5 118 74.6
AagrBONN_evm.TU.Sc2ySwM_117.4057 Anthoceros agrestis HOM05D003740 ORTHO05D004611 1.2e-45 188.3 183 55.7
Cpa.g.c37387 Carica papaya HOM05D003740 ORTHO05D004611 5.2e-33 146.4 98 72.4
TPR.G13517 Trifolium pratense HOM05D003740 ORTHO05D027079 1.5e-27 128.3 88 72.7
vmacro09045 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 9.6e-27 125.6 75 80.0
MBI05_g15360_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 1.4e-25 121.7 69 84.1
SMO112G0048 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 7.8e-21 105.9 75 66.7
BNapus_Darmor_BZH_scaffold_38p00040 Brassica napus HOM05D003740 ORTHO05D027079 6.2e-18 96.3 85 60.0
BcaC09g48688 Brassica carinata HOM05D003740 ORTHO05D027079 1.8e-17 94.7 107 49.5
Psat6g009800 Pisum sativum HOM05D003740 ORTHO05D004611 1.7e-15 88.2 61 63.9
Nitab4.5_0001618g0330 Nicotiana tabacum HOM05D003740 ORTHO05D004611 3.8e-15 87.0 54 74.1
BcaC02g11255 Brassica carinata HOM05D003740 ORTHO05D015230 5.4e-14 83.2 74 58.1
Pp3c1_19750 Physcomitrium patens HOM05D003740 ORTHO05D004611 3.5e-13 80.5 123 41.5
TPR.G40499 Trifolium pratense HOM05D003740 ORTHO05D004611 1.3e-12 78.6 60 63.3
TPR.G2297 Trifolium pratense HOM05D003740 ORTHO05D411092 3.3e-11 73.9 140 37.9
A03p42520 Brassica napus HOM05D024621 ORTHO05D015230 8.4e-07 59.3 40 72.5
Ah.04g151350 Amaranthus hybridus HOM05D002173 ORTHO05D002189 3.2e-06 57.4 36 69.4
BcaNung06569 Brassica carinata HOM05D003740 ORTHO05D027079 9.3e-06 55.8 48 60.4


User provided reference genes

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