Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0038800 Salix brachista HOM05D002974 ORTHO05D002992 3.1e-113 411.8 198 100.0
Potri.016G036600 Populus trichocarpa HOM05D002974 ORTHO05D002992 7.6e-72 274.2 158 86.7
Potri.006G038900 Populus trichocarpa HOM05D002974 ORTHO05D002992 2.4e-49 199.5 149 69.1
Sabra06G0026200 Salix brachista HOM05D002974 ORTHO05D002992 6.3e-34 148.3 118 69.5
CiPaw.10G040200 Carya illinoinensis HOM05D002974 ORTHO05D002992 2.6e-27 126.3 136 55.1
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 4.4e-27 125.6 133 54.1
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 2.7e-24 116.3 138 47.8
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 1.0e-23 114.4 121 53.7
Manes.09G004900 Manihot esculenta HOM05D002974 ORTHO05D002992 1.0e-23 114.4 138 49.3
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 2.2e-23 113.2 138 50.7
QL07p010402 Quercus lobata HOM05D002974 ORTHO05D002992 3.8e-23 112.5 150 46.0
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 5.0e-23 112.1 132 50.8
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 3.2e-22 109.4 141 46.1
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 8.0e-21 104.8 128 49.2
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 1.0e-20 104.4 141 48.2
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 3.0e-20 102.8 129 48.8
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 4.0e-20 102.4 131 48.1
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.3e-18 97.4 140 47.1
Dinv06180 Davidia involucrata HOM05D002974 ORTHO05D002992 3.7e-18 95.9 109 46.8
Eucgr.A02242 Eucalyptus grandis HOM05D002974 ORTHO05D002992 4.8e-18 95.5 144 43.1
Lalb_Chr24g0400351 Lupinus albus HOM05D002974 ORTHO05D002992 1.1e-17 94.4 156 40.4
Phvul.001G123400 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 1.4e-17 94.0 145 42.1
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 1.8e-17 93.6 125 45.6
Oeu059346.1 Olea europaea HOM05D002974 ORTHO05D002992 1.8e-17 93.6 138 42.8
PGR031G3974 Punica granatum HOM05D002974 ORTHO05D002992 1.8e-17 93.6 167 41.3
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 3.1e-17 92.8 139 43.2
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 3.1e-17 92.8 136 42.6
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 3.1e-17 92.8 150 40.7
VMungo1383G0235 Vigna mungo HOM05D002974 ORTHO05D002992 5.4e-17 92.0 139 42.4
Gohir.A11G307100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 7.0e-17 91.7 138 44.9
CSS0032574 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 2.0e-16 90.1 134 42.5
COL.COLO4_04711 Corchorus olitorius HOM05D002974 ORTHO05D002992 2.0e-16 90.1 121 47.1
TAR633G1036 Trochodendron aralioides HOM05D002974 ORTHO05D002992 4.5e-16 89.0 134 44.0
Lalb_Chr22g0357431 Lupinus albus HOM05D002974 ORTHO05D002992 5.9e-16 88.6 159 40.3
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 1.7e-15 87.0 143 42.0
CSS0001226 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 2.2e-15 86.7 135 41.5
TPR.G8953 Trifolium pratense HOM05D002974 ORTHO05D002992 2.9e-15 86.3 134 41.0
Glyma.19G130400 Glycine max HOM05D002974 ORTHO05D002992 8.5e-15 84.7 151 37.1
Medtr7g089860 Medicago truncatula HOM05D002974 ORTHO05D002992 1.1e-14 84.3 166 37.3
CsaV3_4G029660 Cucumis sativus L. HOM05D002974 ORTHO05D002992 1.5e-14 84.0 152 41.4
Gorai.007G352700 Gossypium raimondii HOM05D002974 ORTHO05D002992 2.5e-14 83.2 138 42.8
SHI49841 Sapria himalayana HOM05D048774 ORTHO05D002992 5.5e-14 82.0 128 43.0
SHI50452 Sapria himalayana HOM05D048774 ORTHO05D002992 5.5e-14 82.0 128 43.0
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 7.2e-14 81.6 138 36.2
Lj1g0016303 Lotus japonicus HOM05D002974 ORTHO05D002992 9.4e-14 81.3 158 35.4
Sed0014788 Sechium edule HOM05D002974 ORTHO05D002992 2.7e-13 79.7 144 37.5
Nitab4.5_0004588g0030 Nicotiana tabacum HOM05D015198 ORTHO05D002992 6.1e-13 78.6 151 35.8
MSTRG.26159 Avicennia marina HOM05D002974 ORTHO05D002992 1.8e-12 77.0 129 41.9
Oeu029509.1 Olea europaea HOM05D002974 ORTHO05D002992 1.8e-12 77.0 139 40.3
TWI53G1119 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 2.3e-12 76.6 141 41.1
Gohir.D11G322600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 3.0e-12 76.3 138 40.6
Dinv32015 Davidia involucrata HOM05D002974 ORTHO05D002992 6.8e-12 75.1 137 35.8
Psat3g078800 Pisum sativum HOM05D002974 ORTHO05D002992 6.8e-12 75.1 144 39.6
ClCG10G016220 Citrullus lanatus HOM05D002974 ORTHO05D002992 8.8e-12 74.7 117 40.2
Nitab4.5_0000812g0090 Nicotiana tabacum HOM05D015198 ORTHO05D002992 8.8e-12 74.7 128 35.9
MD14G1088500 Malus domestica HOM05D002974 ORTHO05D002992 1.2e-11 74.3 154 33.1
Lalb_Chr06g0173671 Lupinus albus HOM05D002974 ORTHO05D002992 2.6e-11 73.2 88 50.0
MELO3C019076.2 Cucumis melo HOM05D002974 ORTHO05D002992 3.4e-11 72.8 127 40.9
Cpa.g.sc5.168 Carica papaya HOM05D002974 ORTHO05D002992 5.7e-11 72.0 163 35.6
Peaxi162Scf00003g00491 Petunia axillaris HOM05D015198 ORTHO05D002992 2.2e-10 70.1 54 66.7
Duzib106G1811 Durio zibethinus HOM05D002974 ORTHO05D002992 4.9e-10 68.9 131 40.5
Rhsim04G0111200 Rhododendron simsii HOM05D002974 ORTHO05D002992 4.9e-10 68.9 109 39.4
Rhsim04G0112500 Rhododendron simsii HOM05D002974 ORTHO05D002992 4.9e-10 68.9 109 39.4
THA.LOC104824399 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 6.3e-10 68.6 137 36.5
Ciclev10002803m.g Citrus clementina HOM05D002974 ORTHO05D002992 8.3e-10 68.2 131 35.9
Gohir.D04G016200 Gossypium hirsutum HOM05D002974 ORTHO05D002992 8.3e-10 68.2 117 41.0
PGSC0003DMG400008372 Solanum tuberosum HOM05D015198 ORTHO05D002992 8.3e-10 68.2 145 36.6
Manes.04G157400 Manihot esculenta HOM05D002974 ORTHO05D002992 1.1e-09 67.8 137 35.0
Sed0012008 Sechium edule HOM05D002974 ORTHO05D002992 1.4e-09 67.4 118 36.4
ClCG04G004500 Citrullus lanatus HOM05D002974 ORTHO05D002992 1.8e-09 67.0 56 62.5
Lsat_1_v5_gn_5_156980 Lactuca sativa HOM05D002974 ORTHO05D002992 1.8e-09 67.0 131 37.4
MSTRG.10792 Avicennia marina HOM05D002974 ORTHO05D002992 2.4e-09 66.6 128 39.8
MELO3C009755.2 Cucumis melo HOM05D002974 ORTHO05D002992 2.4e-09 66.6 120 39.2
Solyc10g078440.2 Solanum lycopersicum HOM05D015198 ORTHO05D002992 3.1e-09 66.2 144 34.7
arahy.Tifrunner.gnm1.ann1.C03B5F Arachis hypogaea HOM05D002974 ORTHO05D002992 4.1e-09 65.9 152 32.2
RcHm_v2.0_Chr2g0125651 Rosa chinensis HOM05D002974 ORTHO05D002992 4.1e-09 65.9 75 50.7
CARHR166850 Cardamine hirsuta HOM05D002974 ORTHO05D002992 5.4e-09 65.5 135 37.0
Oeu053079.1 Olea europaea HOM05D002974 ORTHO05D002992 5.4e-09 65.5 135 35.6
Oeu064130.1 Olea europaea HOM05D002974 ORTHO05D002992 5.4e-09 65.5 145 34.5
MSTRG.28034 Avicennia marina HOM05D002974 ORTHO05D002992 1.2e-08 64.3 130 32.3
DCAR_013643 Daucus carota HOM05D002974 ORTHO05D002992 1.2e-08 64.3 146 34.2
COL.COLO4_20695 Corchorus olitorius HOM05D003550 ORTHO05D004336 1.6e-08 63.9 101 42.6
Os05g0390800 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 1.6e-08 63.9 96 46.9
Zm00001eb005210 Zea mays HOM05D002974 ORTHO05D002992 2.0e-08 63.5 138 37.0
Dinv44699 Davidia involucrata HOM05D002974 ORTHO05D002992 2.7e-08 63.2 144 34.0
Migut.N01854 Erythranthe guttata HOM05D002974 ORTHO05D002992 2.7e-08 63.2 122 32.0
SGA_v2.0_scaffold105G30292 Striga asiatica HOM05D002974 ORTHO05D002992 2.7e-08 63.2 127 37.8
Atru.chr12.1277 Acer truncatum HOM05D002974 ORTHO05D002992 3.5e-08 62.8 127 36.2
MELO3C012484.2 Cucumis melo HOM05D002974 ORTHO05D002992 3.5e-08 62.8 132 31.1
ATR1096G079 Amborella trichopoda HOM05D002974 ORTHO05D002992 4.5e-08 62.4 54 61.1
Ca_08391_v3 Cicer arietinum L. HOM05D002974 ORTHO05D002992 4.5e-08 62.4 110 38.2
Gorai.012G018900 Gossypium raimondii HOM05D002974 ORTHO05D002992 4.5e-08 62.4 117 39.3
Sed0004403 Sechium edule HOM05D002974 ORTHO05D002992 4.5e-08 62.4 74 48.6
Duzib114G0524 Durio zibethinus HOM05D002974 ORTHO05D002992 5.9e-08 62.0 134 37.3
PSO384G2085 Papaver somniferum HOM05D002974 ORTHO05D002992 5.9e-08 62.0 144 33.3
SGA_v2.0_scaffold105G30310 Striga asiatica HOM05D002974 ORTHO05D002992 5.9e-08 62.0 127 37.0
Thecc.10G149600 Theobroma cacao HOM05D002974 ORTHO05D002992 5.9e-08 62.0 121 39.7
Zm00001eb369260 Zea mays HOM05D002974 ORTHO05D002992 5.9e-08 62.0 69 52.2
AL5G38080 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 1.0e-07 61.2 131 35.1
PSO339G5722 Papaver somniferum HOM05D002974 ORTHO05D002992 1.0e-07 61.2 148 33.8
Potri.001G029700 Populus trichocarpa HOM05D002974 ORTHO05D002992 1.0e-07 61.2 123 35.8
Aa31LG10G11550 Aethionema arabicum HOM05D002974 ORTHO05D002992 1.3e-07 60.8 130 36.2
SalBow6G6653 Salvia bowleyana HOM05D002974 ORTHO05D002992 1.3e-07 60.8 70 47.1
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 1.3e-07 60.8 114 38.6
Manes.11G007000 Manihot esculenta HOM05D002974 ORTHO05D002992 1.7e-07 60.5 137 32.8
Medtr3g013980 Medicago truncatula HOM05D002974 ORTHO05D002992 1.7e-07 60.5 57 57.9
QL04p017813 Quercus lobata HOM05D002974 ORTHO05D002992 1.7e-07 60.5 63 50.8
QL04p018674 Quercus lobata HOM05D002974 ORTHO05D002992 1.7e-07 60.5 63 50.8
THA.LOC104816020 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 1.7e-07 60.5 123 38.2
TWI15G0153 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 2.3e-07 60.1 129 36.4
Carub.0005s2345 Capsella rubella HOM05D002974 ORTHO05D002992 3.8e-07 59.3 128 32.8
CAN.G134.10 Capsicum annuum HOM05D002974 ORTHO05D002992 3.8e-07 59.3 124 33.9
Os01g0808900 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 3.8e-07 59.3 41 73.2
TPR.G31150 Trifolium pratense HOM05D002974 ORTHO05D002992 3.8e-07 59.3 57 52.6
BcaC07g40124 Brassica carinata HOM05D002974 ORTHO05D002992 5.0e-07 58.9 145 31.0
FAN05G2143 Fragaria x ananassa HOM05D002974 ORTHO05D002992 5.0e-07 58.9 108 38.9
SGA_v2.0_scaffold69G23150 Striga asiatica HOM05D002974 ORTHO05D002992 5.0e-07 58.9 128 39.1
Ca_12961_v3 Cicer arietinum L. HOM05D002974 ORTHO05D002992 6.6e-07 58.5 97 40.2
Oeu006786.1 Olea europaea HOM05D002974 ORTHO05D002992 6.6e-07 58.5 134 35.8
THA.LOC104820144 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 6.6e-07 58.5 44 65.9
FvH4_6g25410 Fragaria vesca HOM05D002974 ORTHO05D002992 8.6e-07 58.2 36 77.8
Psat4g145360 Pisum sativum HOM05D002974 ORTHO05D002992 8.6e-07 58.2 56 53.6
Nitab4.5_0003481g0110 Nicotiana tabacum HOM05D002974 ORTHO05D002992 1.1e-06 57.8 68 48.5
Rhsim07G0068200 Rhododendron simsii HOM05D002974 ORTHO05D002992 1.1e-06 57.8 70 45.7
Potri.003G194700 Populus trichocarpa HOM05D002974 ORTHO05D002992 1.5e-06 57.4 140 30.7
CiPaw.13G015100 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.9e-06 57.0 48 58.3
Nitab4.5_0005808g0010 Nicotiana tabacum HOM05D002974 ORTHO05D002992 1.9e-06 57.0 48 60.4
Potri.013G043800 Populus trichocarpa HOM05D011447 ORTHO05D010069 1.9e-06 57.0 55 54.5
Potri.016G093900 Populus trichocarpa HOM05D011447 ORTHO05D010069 1.9e-06 57.0 55 54.5
CsaV3_5G036860 Cucumis sativus L. HOM05D002974 ORTHO05D002992 2.5e-06 56.6 80 41.2
Dinv05728 Davidia involucrata HOM05D009218 ORTHO05D010069 2.5e-06 56.6 88 38.6
Lalb_Chr19g0133001 Lupinus albus HOM05D002974 ORTHO05D002992 2.5e-06 56.6 50 56.0
Sabra13G0040600 Salix brachista HOM05D011447 ORTHO05D010069 2.5e-06 56.6 55 52.7
THA.LOC109116532 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 2.5e-06 56.6 44 63.6
VMungo1080G0254 Vigna mungo HOM05D002974 ORTHO05D002992 2.5e-06 56.6 52 57.7
CiPaw.14G008700 Carya illinoinensis HOM05D002974 ORTHO05D002992 3.3e-06 56.2 108 40.7
Dinv12041 Davidia involucrata HOM05D002974 ORTHO05D002992 3.3e-06 56.2 85 45.9
ECA234G2872 Erigeron canadensis HOM05D002974 ORTHO05D002992 3.3e-06 56.2 117 34.2
FAN02G0528 Fragaria x ananassa HOM05D002974 ORTHO05D002992 3.3e-06 56.2 36 75.0
Glyma.13G193800 Glycine max HOM05D002974 ORTHO05D002992 3.3e-06 56.2 62 48.4
Lj3g0008937 Lotus japonicus HOM05D002974 ORTHO05D002992 3.3e-06 56.2 41 68.3
Psat5g220360 Pisum sativum HOM05D002974 ORTHO05D002992 3.3e-06 56.2 42 66.7
Sabra03G0145400 Salix brachista HOM05D002974 ORTHO05D002992 3.3e-06 56.2 125 36.0
TPR.G22516 Trifolium pratense HOM05D002974 ORTHO05D002992 3.3e-06 56.2 44 61.4
unitig_26.g9507 Utricularia gibba HOM05D002974 ORTHO05D002992 4.3e-06 55.8 126 31.7
Gohir.A05G399600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 5.6e-06 55.5 114 38.6
FAN09G2803 Fragaria x ananassa HOM05D002974 ORTHO05D002992 7.3e-06 55.1 36 75.0
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 7.3e-06 55.1 54 51.9
Medtr8g040080 Medicago truncatula HOM05D002974 ORTHO05D002992 7.3e-06 55.1 58 51.7
Prupe.2G041200 Prunus persica HOM05D002974 ORTHO05D002992 7.3e-06 55.1 118 37.3
SalBow1G0087 Salvia bowleyana HOM05D064831 ORTHO05D002992 7.3e-06 55.1 87 42.5
Sopen01g040240 Solanum pennellii HOM05D002974 ORTHO05D002992 7.3e-06 55.1 121 35.5
Cfa010941 Carpinus fangiana HOM05D002974 ORTHO05D002992 9.5e-06 54.7 35 77.1
AUR62032633 Chenopodium quinoa HOM05D012416 ORTHO05D002992 9.5e-06 54.7 138 30.4
Migut.K00136 Erythranthe guttata HOM05D002974 ORTHO05D002992 9.5e-06 54.7 46 58.7
Eucgr.G03218 Eucalyptus grandis HOM05D002974 ORTHO05D002992 9.5e-06 54.7 144 32.6
Thhalv10006291m.g Eutrema salsugineum HOM05D002974 ORTHO05D002992 9.5e-06 54.7 121 33.9
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 9.5e-06 54.7 117 33.3
Gohir.A10G187100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 9.5e-06 54.7 78 44.9
PGR031G0048 Punica granatum HOM05D002974 ORTHO05D002992 9.5e-06 54.7 72 43.1


User provided reference genes

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