Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0031900 Salix brachista HOM05D005060 ORTHO05D005975 8.6e-83 310.5 177 100.0
Sabra16G0032200 Salix brachista HOM05D005060 ORTHO05D005975 8.6e-59 230.7 177 79.7
Potri.016G027600 Populus trichocarpa HOM05D005060 ORTHO05D005975 4.7e-57 224.9 177 75.1
Atru.chr1.1520 Acer truncatum HOM05D005060 ORTHO05D005975 1.1e-26 124.0 120 67.5
Haze_20306 Corylus avellana HOM05D005060 ORTHO05D005975 4.8e-25 118.6 191 49.7
MD07G1060800 Malus domestica HOM05D005060 ORTHO05D005975 3.1e-24 115.9 125 61.6
MD02G1260500 Malus domestica HOM05D005060 ORTHO05D005975 3.4e-23 112.5 125 64.8
Ciclev10013047m.g Citrus clementina HOM05D005060 ORTHO05D005975 4.5e-23 112.1 175 52.0
Cfa019938 Carpinus fangiana HOM05D005060 ORTHO05D005975 1.0e-22 110.9 117 62.4
Prupe.2G065900 Prunus persica HOM05D005060 ORTHO05D005975 1.7e-22 110.2 120 63.3
ClCG04G005980 Citrullus lanatus HOM05D005060 ORTHO05D005975 6.5e-22 108.2 179 46.9
RcHm_v2.0_Chr1g0331611 Rosa chinensis HOM05D005060 ORTHO05D005975 6.5e-22 108.2 120 62.5
Glyma.19G124900 Glycine max HOM05D005060 ORTHO05D005975 4.2e-21 105.5 144 58.3
MELO3C019148.2 Cucumis melo HOM05D005060 ORTHO05D005975 5.5e-21 105.1 120 53.3
CsaV3_4G029150 Cucumis sativus L. HOM05D005060 ORTHO05D005975 1.2e-20 104.0 120 52.5
TWI53G1989 Tripterygium wilfordii HOM05D005060 ORTHO05D005975 1.6e-20 103.6 119 55.5
Sed0011991 Sechium edule HOM05D005060 ORTHO05D005975 6.0e-20 101.7 104 60.6
VMungo1383G0657 Vigna mungo HOM05D005060 ORTHO05D005975 6.0e-20 101.7 104 65.4
FAN03G0591 Fragaria x ananassa HOM05D005060 ORTHO05D005975 5.1e-19 98.6 118 59.3
FAN01G1650 Fragaria x ananassa HOM05D005060 ORTHO05D005975 1.5e-18 97.1 106 64.2
Phvul.001G116500 Phaseolus vulgaris HOM05D005060 ORTHO05D005975 2.5e-18 96.3 110 62.7
Lj1C23T21 Lonicera japonica HOM05D005060 ORTHO05D005975 7.4e-18 94.7 120 48.3
Lalb_Chr22g0358011 Lupinus albus HOM05D005060 ORTHO05D005975 7.4e-18 94.7 128 50.0
Lj1g0025022 Lotus japonicus HOM05D005060 ORTHO05D005975 2.8e-17 92.8 94 59.6
Eucgr.A02181 Eucalyptus grandis HOM05D005060 ORTHO05D005975 4.8e-17 92.0 120 55.8
FAN10G4368 Fragaria x ananassa HOM05D002241 ORTHO05D002458 1.8e-16 90.1 106 63.2
Cpa.g.sc33.199 Carica papaya HOM05D005060 ORTHO05D005975 4.1e-16 89.0 176 43.8
FAN06G1820 Fragaria x ananassa HOM05D002241 ORTHO05D002458 4.1e-16 89.0 145 49.7
PGR042G1122 Punica granatum HOM05D005060 ORTHO05D005975 4.1e-16 89.0 86 68.6
FvH4_7g05170 Fragaria vesca HOM05D005060 ORTHO05D005975 9.0e-16 87.8 106 59.4
FAN06G0894 Fragaria x ananassa HOM05D005060 ORTHO05D005975 9.0e-16 87.8 106 59.4
Lalb_Chr14g0365381 Lupinus albus HOM05D005060 ORTHO05D005975 9.0e-16 87.8 184 43.5
Rhsim04G0118500 Rhododendron simsii HOM05D005060 ORTHO05D005975 9.0e-16 87.8 152 40.8
Nn7g37114 Nelumbo nucifera HOM05D005060 ORTHO05D005975 1.2e-15 87.4 177 48.0
TWI74G0004 Tripterygium wilfordii HOM05D005060 ORTHO05D005975 1.2e-15 87.4 177 42.9
Nitab4.5_0003286g0020 Nicotiana tabacum HOM05D005060 ORTHO05D005975 1.5e-15 87.0 155 41.9
Lsat_1_v5_gn_8_109400 Lactuca sativa HOM05D005060 ORTHO05D005975 2.0e-15 86.7 89 52.8
SGA_v2.0_scaffold66G22311 Striga asiatica HOM05D005060 ORTHO05D005975 2.0e-15 86.7 109 54.1
MBI19_g25016_MAGBIO Magnolia biondii HOM05D005060 ORTHO05D005975 2.6e-15 86.3 120 55.0
TAR369G0553 Trochodendron aralioides HOM05D005060 ORTHO05D005975 2.6e-15 86.3 119 52.1
Lalb_Chr24g0400621 Lupinus albus HOM05D005060 ORTHO05D005975 3.4e-15 85.9 185 40.5
Ca_08351_v3 Cicer arietinum L. HOM05D005060 ORTHO05D005975 4.5e-15 85.5 110 47.3
Gohir.D01G177000 Gossypium hirsutum HOM05D005060 ORTHO05D005975 1.7e-14 83.6 178 45.5
Gorai.002G226200 Gossypium raimondii HOM05D005060 ORTHO05D005975 1.7e-14 83.6 178 45.5
TPR.G27972 Trifolium pratense HOM05D005060 ORTHO05D005975 5.0e-14 82.0 102 55.9
Psat0s2745g0280 Pisum sativum HOM05D005060 ORTHO05D005975 1.4e-13 80.5 138 41.3
GSVIVG01025849001 Vitis vinifera HOM05D005060 ORTHO05D005975 1.4e-13 80.5 119 52.9
Glyma.03G120300 Glycine max HOM05D005060 ORTHO05D005975 3.2e-13 79.3 148 46.6
Gohir.A13G001200 Gossypium hirsutum HOM05D005060 ORTHO05D005975 3.2e-13 79.3 85 55.3
arahy.Tifrunner.gnm1.ann1.3R5KQS Arachis hypogaea HOM05D005060 ORTHO05D005975 5.5e-13 78.6 62 79.0
A09p49780 Brassica napus HOM05D005060 ORTHO05D005975 5.5e-13 78.6 96 61.5
BraA09t40431Z Brassica rapa HOM05D005060 ORTHO05D005975 5.5e-13 78.6 96 61.5
Potri.006G029500 Populus trichocarpa HOM05D005060 ORTHO05D005975 5.5e-13 78.6 108 46.3
ECA236G1981 Erigeron canadensis HOM05D005060 ORTHO05D005975 7.2e-13 78.2 118 46.6
PSO339G2385 Papaver somniferum HOM05D005060 ORTHO05D005975 7.2e-13 78.2 142 41.5
BcaC02g09878 Brassica carinata HOM05D005060 ORTHO05D005975 9.3e-13 77.8 180 42.8
C04p35630 Brassica napus HOM05D005060 ORTHO05D005975 9.3e-13 77.8 180 42.8
BolC4t25241H Brassica oleracea HOM05D005060 ORTHO05D005975 9.3e-13 77.8 180 42.8
CANSAT78G0005 Cannabis sativa HOM05D005060 ORTHO05D005975 9.3e-13 77.8 161 49.1
CiPaw.10G123900 Carya illinoinensis HOM05D005060 ORTHO05D005975 9.3e-13 77.8 93 64.5
Gohir.A01G192800 Gossypium hirsutum HOM05D005060 ORTHO05D005975 9.3e-13 77.8 88 64.8
arahy.Tifrunner.gnm1.ann1.U3TF2Z Arachis hypogaea HOM05D005060 ORTHO05D005975 1.2e-12 77.4 62 72.6
BcaC07g40003 Brassica carinata HOM05D005060 ORTHO05D005975 1.2e-12 77.4 96 60.4
C08p32160 Brassica napus HOM05D005060 ORTHO05D005975 1.2e-12 77.4 96 60.4
BolC8t50834H Brassica oleracea HOM05D005060 ORTHO05D005975 1.2e-12 77.4 96 60.4
AT3G56910 Arabidopsis thaliana HOM05D005060 ORTHO05D005975 2.7e-12 76.3 180 43.9
BraA07t29972Z Brassica rapa HOM05D000531 ORTHO05D001630 2.7e-12 76.3 178 42.1
Duzib093G0151 Durio zibethinus HOM05D005060 ORTHO05D005975 2.7e-12 76.3 178 43.3
Manes.08G066600 Manihot esculenta HOM05D005060 ORTHO05D005975 2.7e-12 76.3 152 38.2
PSO384G0259 Papaver somniferum HOM05D005060 ORTHO05D005975 3.5e-12 75.9 151 39.1
Sp5g05680 Schrenkiella parvula HOM05D005060 ORTHO05D005975 3.5e-12 75.9 180 45.0
unitig_21.g20673 Utricularia gibba HOM05D005060 ORTHO05D005975 6.1e-12 75.1 90 55.6
Thecc.05G132800 Theobroma cacao HOM05D005060 ORTHO05D005975 7.9e-12 74.7 179 43.6
CAN.G128.101 Capsicum annuum HOM05D005060 ORTHO05D005975 1.0e-11 74.3 109 42.2
A07p23120 Brassica napus HOM05D005060 ORTHO05D005975 1.8e-11 73.6 89 62.9
vmacro08973 Vaccinium macrocarpon HOM05D005060 ORTHO05D005975 1.8e-11 73.6 177 35.6
Solyc10g081100.3 Solanum lycopersicum HOM05D005060 ORTHO05D005975 2.3e-11 73.2 177 36.7
BcaC08g44810 Brassica carinata HOM05D005060 ORTHO05D005975 3.0e-11 72.8 91 52.7
Manes.13G072000 Manihot esculenta HOM05D005060 ORTHO05D005975 3.0e-11 72.8 152 42.1
Nitab4.5_0000062g0300 Nicotiana tabacum HOM05D005060 ORTHO05D005975 3.0e-11 72.8 118 44.1
Psat3g082360 Pisum sativum HOM05D005060 ORTHO05D005975 3.0e-11 72.8 105 56.2
Medtr7g088520 Medicago truncatula HOM05D005060 ORTHO05D005975 5.1e-11 72.0 123 40.7
Sopen10g031600 Solanum pennellii HOM05D005060 ORTHO05D005975 6.7e-11 71.6 177 36.7
ATR0787G086 Amborella trichopoda HOM05D005060 ORTHO05D005975 1.5e-10 70.5 156 44.2
CARHR167060 Cardamine hirsuta HOM05D005060 ORTHO05D005975 1.5e-10 70.5 94 57.4
Sc13g0000780 Simmondsia chinensis HOM05D005060 ORTHO05D005975 1.5e-10 70.5 120 47.5
Aqoxy1G00045 Aquilegia oxysepala HOM05D005060 ORTHO05D005975 1.9e-10 70.1 119 51.3
A04p03610 Brassica napus HOM05D005060 ORTHO05D005975 1.9e-10 70.1 95 60.0
PGSC0003DMG400028107 Solanum tuberosum HOM05D005060 ORTHO05D005975 2.5e-10 69.7 180 37.2
DCAR_009091 Daucus carota HOM05D005060 ORTHO05D005975 3.3e-10 69.3 118 48.3
Sabra16G0031500 Salix brachista HOM05D002460 ORTHO05D016446 3.3e-10 69.3 74 54.1
MSTRG.6293 Avicennia marina HOM05D005060 ORTHO05D005975 7.4e-10 68.2 119 47.1
Carub.0005s2365 Capsella rubella HOM05D005060 ORTHO05D005975 7.4e-10 68.2 181 43.1
AL5G38310 Arabidopsis lyrata HOM05D005060 ORTHO05D005975 9.7e-10 67.8 180 41.7
SGA_v2.0_scaffold69G23194 Striga asiatica HOM05D005060 ORTHO05D005975 1.3e-09 67.4 103 52.4
Haze_20302 Corylus avellana HOM05D005060 ORTHO05D005975 8.2e-09 64.7 120 37.5
Migut.J01559 Erythranthe guttata HOM05D005060 ORTHO05D005975 1.8e-08 63.5 179 37.4
BcaB02g08343 Brassica carinata HOM05D005060 ORTHO05D005975 2.4e-08 63.2 87 57.5
HanXRQChr05g0130501 Helianthus annuus HOM05D005060 ORTHO05D005975 2.4e-08 63.2 108 41.7
VMungo0331G0467 Vigna mungo HOM05D005060 ORTHO05D005975 4.1e-08 62.4 165 41.2
Oeu023007.1 Olea europaea HOM05D005060 ORTHO05D005975 5.3e-08 62.0 91 51.6
Os01g0278900 Oryza sativa ssp. japonica HOM05D005060 ORTHO05D005975 6.9e-08 61.6 158 32.9
Peaxi162Scf00153g01321 Petunia axillaris HOM05D005060 ORTHO05D005975 1.5e-07 60.5 109 45.9
Cpa.g.sc33.198 Carica papaya HOM05D005060 ORTHO05D005975 2.0e-07 60.1 145 44.8
Hma1.2p1_0031F.1_g018400 Hydrangea macrophylla HOM05D005060 ORTHO05D005975 2.0e-07 60.1 87 56.3
Hma1.2p1_2089F.1_g313840 Hydrangea macrophylla HOM05D005060 ORTHO05D005975 2.0e-07 60.1 87 56.3
Duzib128G1851 Durio zibethinus HOM05D005060 ORTHO05D005975 2.6e-07 59.7 91 53.8
QL07p014517 Quercus lobata HOM05D005060 ORTHO05D005975 2.6e-07 59.7 121 36.4
Potri.006G028500 Populus trichocarpa HOM05D005060 ORTHO05D005975 3.4e-07 59.3 108 39.8
Ah.04g150220 Amaranthus hybridus HOM05D005060 ORTHO05D005975 4.5e-07 58.9 96 46.9
Sabra06G0020700 Salix brachista HOM05D005060 ORTHO05D005975 4.5e-07 58.9 188 36.7
Hund24512 Selenicereus undatus HOM05D005060 ORTHO05D005975 4.5e-07 58.9 118 44.9
CSS0016899 Camellia sinensis var. sinensis HOM05D005060 ORTHO05D005975 7.7e-07 58.2 99 46.5
SGA_v2.0_scaffold104G30067 Striga asiatica HOM05D005060 ORTHO05D005975 1.7e-06 57.0 74 44.6
Ah.13g077380 Amaranthus hybridus HOM05D005060 ORTHO05D005975 8.5e-06 54.7 102 47.1
CAN.G959.26 Capsicum annuum HOM05D005060 ORTHO05D005975 8.5e-06 54.7 145 37.2


User provided reference genes

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