Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0009300 Salix brachista HOM05D005880 ORTHO05D007114 7.4e-116 420.6 223 100.0
Sabra16G0009100 Salix brachista HOM05D005880 ORTHO05D007114 1.2e-65 253.8 145 97.2
Potri.016G004300 Populus trichocarpa HOM05D005880 ORTHO05D007114 1.2e-57 227.3 145 87.6
Potri.006G003600 Populus trichocarpa HOM05D005880 ORTHO05D007114 1.2e-52 210.7 145 80.7
COL.COLO4_17867 Corchorus olitorius HOM05D005880 ORTHO05D007114 2.7e-49 199.5 145 74.5
arahy.Tifrunner.gnm1.ann1.G2QNI1 Arachis hypogaea HOM05D005880 ORTHO05D007114 3.5e-49 199.1 145 75.2
Duzib052G0157 Durio zibethinus HOM05D005880 ORTHO05D007114 1.3e-48 197.2 145 74.5
Manes.10G129200 Manihot esculenta HOM05D005880 ORTHO05D007114 1.3e-48 197.2 145 74.5
Haze_01670 Corylus avellana HOM05D005880 ORTHO05D007114 1.7e-48 196.8 145 72.4
Manes.07G015600 Manihot esculenta HOM05D005880 ORTHO05D007114 1.7e-48 196.8 145 73.8
Duzib132G0062 Durio zibethinus HOM05D005880 ORTHO05D007114 3.0e-48 196.1 145 73.1
Gohir.A01G000600 Gossypium hirsutum HOM05D005880 ORTHO05D007114 3.0e-48 196.1 145 73.8
Gohir.D01G000400 Gossypium hirsutum HOM05D005880 ORTHO05D007114 3.0e-48 196.1 145 73.8
Gorai.002G001000 Gossypium raimondii HOM05D005880 ORTHO05D007114 3.0e-48 196.1 145 73.8
Thecc.02G038300 Theobroma cacao HOM05D005880 ORTHO05D007114 3.0e-48 196.1 145 73.8
QL11p018494 Quercus lobata HOM05D005880 ORTHO05D007114 6.6e-48 194.9 145 72.4
Glyma.15G046700 Glycine max HOM05D005880 ORTHO05D007114 8.6e-48 194.5 145 73.1
Lj6g0008702 Lotus japonicus HOM05D005880 ORTHO05D007114 2.5e-47 193.0 145 71.0
CiPaw.06G147400 Carya illinoinensis HOM05D005880 ORTHO05D007114 3.3e-47 192.6 147 70.7
VMungo0540G2478 Vigna mungo HOM05D005880 ORTHO05D007114 9.5e-47 191.0 145 71.0
Cpa.g.sc113.61 Carica papaya HOM05D005880 ORTHO05D007114 6.2e-46 188.3 145 69.7
Phvul.006G214500 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 1.4e-45 187.2 145 69.7
CiPaw.05G044300 Carya illinoinensis HOM05D005880 ORTHO05D007114 1.8e-45 186.8 145 69.7
Medtr2g007190 Medicago truncatula HOM05D005880 ORTHO05D007114 1.8e-45 186.8 145 71.0
RcHm_v2.0_Chr7g0222451 Rosa chinensis HOM05D005880 ORTHO05D007114 2.3e-45 186.4 145 69.0
FAN18G2654 Fragaria x ananassa HOM05D005880 ORTHO05D007114 4.0e-45 185.7 172 61.6
MD15G1423100 Malus domestica HOM05D005880 ORTHO05D007114 4.0e-45 185.7 145 67.6
FvH4_5g29530 Fragaria vesca HOM05D005880 ORTHO05D007114 8.9e-45 184.5 145 69.0
GSVIVG01022927001 Vitis vinifera HOM05D005880 ORTHO05D007114 2.0e-44 183.3 145 67.6
FAN08G1303 Fragaria x ananassa HOM05D005880 ORTHO05D007114 7.6e-44 181.4 143 68.5
CsaV3_3G018850 Cucumis sativus L. HOM05D005880 ORTHO05D007114 9.9e-44 181.0 145 66.2
MD08G1229100 Malus domestica HOM05D005880 ORTHO05D007114 9.9e-44 181.0 145 66.2
FAN04G0122 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.7e-43 180.3 143 67.8
Prupe.1G568400 Prunus persica HOM05D005880 ORTHO05D007114 2.2e-43 179.9 143 68.5
ClCG05G009710 Citrullus lanatus HOM05D005880 ORTHO05D007114 2.9e-43 179.5 145 66.9
Cc02_g22480 Coffea canephora HOM05D005880 ORTHO05D007114 7.1e-42 174.9 142 68.3
Atru.chr6.645 Acer truncatum HOM05D005880 ORTHO05D007114 9.2e-42 174.5 145 64.1
Dinv24281 Davidia involucrata HOM05D005880 ORTHO05D007114 7.8e-41 171.4 141 67.4
Sed0000042 Sechium edule HOM05D005880 ORTHO05D007114 5.1e-40 168.7 145 62.8
Aqoxy6G00184 Aquilegia oxysepala HOM05D005880 ORTHO05D007114 6.6e-40 168.3 143 65.0
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 8.6e-40 167.9 143 66.4
Nn5g28217 Nelumbo nucifera HOM05D005880 ORTHO05D007114 1.1e-39 167.5 140 64.3
TAR628G0071 Trochodendron aralioides HOM05D005880 ORTHO05D007114 1.1e-39 167.5 140 65.0
CANSAT54G2878 Cannabis sativa HOM05D005880 ORTHO05D007114 1.5e-39 167.2 145 63.4
TAR376G0254 Trochodendron aralioides HOM05D005880 ORTHO05D007114 1.5e-39 167.2 140 65.7
Ciclev10002788m.g Citrus clementina HOM05D005880 ORTHO05D007114 5.6e-39 165.2 142 64.8
TWI59G1122 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 7.3e-39 164.9 145 64.1
Rhsim11G0129500 Rhododendron simsii HOM05D005880 ORTHO05D007114 2.1e-38 163.3 147 61.9
Ah.04g161590 Amaranthus hybridus HOM05D005880 ORTHO05D007114 4.7e-38 162.2 145 63.4
Hma1.2p1_0217F.1_g092030 Hydrangea macrophylla HOM05D005880 ORTHO05D007114 4.0e-37 159.1 147 63.9
Lsat_1_v5_gn_5_109301 Lactuca sativa HOM05D005880 ORTHO05D007114 1.2e-36 157.5 143 62.9
PGR042G3410 Punica granatum HOM05D005880 ORTHO05D007114 1.2e-36 157.5 145 62.1
arahy.Tifrunner.gnm1.ann1.MS6DZN Arachis hypogaea HOM05D005880 ORTHO05D007114 5.8e-36 155.2 121 70.2
PGSC0003DMG400023792 Solanum tuberosum HOM05D005880 ORTHO05D007114 5.8e-36 155.2 148 62.8
arahy.Tifrunner.gnm1.ann1.JTZ9FV Arachis hypogaea HOM05D005880 ORTHO05D007114 7.6e-36 154.8 130 67.7
Sopen01g046630 Solanum pennellii HOM05D005880 ORTHO05D007114 7.6e-36 154.8 148 62.2
Nitab4.5_0010062g0030 Nicotiana tabacum HOM05D005880 ORTHO05D007114 9.9e-36 154.5 142 62.7
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 1.3e-35 154.1 117 72.6
arahy.Tifrunner.gnm1.ann1.IQ7NU0 Arachis hypogaea HOM05D005880 ORTHO05D007114 2.2e-35 153.3 116 73.3
arahy.Tifrunner.gnm1.ann1.REH2VN Arachis hypogaea HOM05D005880 ORTHO05D007114 2.2e-35 153.3 116 73.3
Nn1g08723 Nelumbo nucifera HOM05D005880 ORTHO05D007114 2.2e-35 153.3 138 60.9
CAN.G1577.17 Capsicum annuum HOM05D005880 ORTHO05D007114 3.8e-35 152.5 157 57.3
ECA234G2605 Erigeron canadensis HOM05D005880 ORTHO05D007114 4.9e-35 152.1 147 60.5
Eucgr.G00579 Eucalyptus grandis HOM05D005880 ORTHO05D007114 4.9e-35 152.1 145 57.2
Solyc01g104190.2 Solanum lycopersicum HOM05D005880 ORTHO05D007114 6.4e-35 151.8 148 61.5
TWI23G0568 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 6.4e-35 151.8 145 63.4
arahy.Tifrunner.gnm1.ann1.BDEX7B Arachis hypogaea HOM05D005880 ORTHO05D007114 1.1e-34 151.0 114 73.7
arahy.Tifrunner.gnm1.ann1.90JL3B Arachis hypogaea HOM05D005880 ORTHO05D007114 7.1e-34 148.3 114 72.8
Psat1g224760 Pisum sativum HOM05D005880 ORTHO05D007114 1.2e-33 147.5 119 69.7
Oeu045943.1 Olea europaea HOM05D005880 ORTHO05D007114 2.1e-33 146.7 132 63.6
CiPaw.04G102300 Carya illinoinensis HOM05D005880 ORTHO05D007114 4.6e-33 145.6 114 69.3
MBI06_g20717_MAGBIO Magnolia biondii HOM05D005880 ORTHO05D007114 1.0e-32 144.4 141 54.6
Nitab4.5_0002245g0020 Nicotiana tabacum HOM05D005880 ORTHO05D007114 1.0e-32 144.4 142 60.6
EL10Ac4g10345 Beta vulgaris HOM05D005880 ORTHO05D007114 1.3e-32 144.1 145 59.3
TPR.G23065 Trifolium pratense HOM05D005880 ORTHO05D007114 1.7e-32 143.7 145 57.9
Gohir.D02G233200 Gossypium hirsutum HOM05D005880 ORTHO05D007114 3.0e-32 142.9 146 56.8
Gorai.005G261100 Gossypium raimondii HOM05D005880 ORTHO05D007114 3.0e-32 142.9 146 56.8
Gohir.A03G211800 Gossypium hirsutum HOM05D005880 ORTHO05D007114 5.1e-32 142.1 146 56.2
SGA_v2.0_scaffold1G00307 Striga asiatica HOM05D002729 ORTHO05D003163 5.1e-32 142.1 141 56.0
AL2G15640 Arabidopsis lyrata HOM05D005880 ORTHO05D007114 6.6e-32 141.7 145 53.8
Migut.B00838 Erythranthe guttata HOM05D005880 ORTHO05D007114 3.3e-31 139.4 147 55.1
Gohir.A08G134100 Gossypium hirsutum HOM05D005880 ORTHO05D007114 4.3e-31 139.0 144 56.9
CSS0048748 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 7.3e-31 138.3 138 58.7
Lalb_Chr15g0090661 Lupinus albus HOM05D005880 ORTHO05D007114 7.3e-31 138.3 115 66.1
Aa31LG2G9680 Aethionema arabicum HOM05D005880 ORTHO05D007114 9.6e-31 137.9 145 52.4
FAN13G3279 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.3e-30 137.5 118 63.6
AUR62000032 Chenopodium quinoa HOM05D005880 ORTHO05D007114 2.1e-30 136.7 145 56.6
Peaxi162Scf00011g00326 Petunia axillaris HOM05D005880 ORTHO05D007114 2.8e-30 136.3 152 55.3
THA.LOC104819299 Tarenaya hassleriana HOM05D005880 ORTHO05D007114 4.8e-30 135.6 145 50.3
CSS0009830 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 6.2e-30 135.2 141 57.4
CSS0021530 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 5.3e-29 132.1 141 56.0
BcaB07g31236 Brassica carinata HOM05D005880 ORTHO05D007114 6.9e-29 131.7 145 51.0
CANSAT35G1534 Cannabis sativa HOM05D005880 ORTHO05D007114 6.9e-29 131.7 112 63.4
BcaC04g22278 Brassica carinata HOM05D005880 ORTHO05D007114 1.2e-28 131.0 145 50.3
C09p21370 Brassica napus HOM05D005880 ORTHO05D007114 1.2e-28 131.0 145 50.3
BolC9t55037H Brassica oleracea HOM05D005880 ORTHO05D007114 1.2e-28 131.0 145 50.3
Sed0012668 Sechium edule HOM05D005880 ORTHO05D007114 1.2e-28 131.0 146 55.5
CARHR051910 Cardamine hirsuta HOM05D005880 ORTHO05D007114 1.5e-28 130.6 145 51.7
Sp2g03790 Schrenkiella parvula HOM05D005880 ORTHO05D007114 1.5e-28 130.6 145 51.0
Thhalv10023746m.g Eutrema salsugineum HOM05D005880 ORTHO05D007114 2.0e-28 130.2 145 50.3
Carub.0002s0442 Capsella rubella HOM05D005880 ORTHO05D007114 2.6e-28 129.8 145 51.0
AT1G60870 Arabidopsis thaliana HOM05D005880 ORTHO05D007114 3.4e-28 129.4 145 49.7
A09p17170 Brassica napus HOM05D005880 ORTHO05D007114 4.5e-28 129.0 145 49.7
BraA09t37350Z Brassica rapa HOM05D005880 ORTHO05D007114 4.5e-28 129.0 145 49.7
PSO528G0075 Papaver somniferum HOM05D005880 ORTHO05D007114 9.9e-28 127.9 142 53.5
Sc16g0012020 Simmondsia chinensis HOM05D005880 ORTHO05D007114 9.9e-28 127.9 145 51.7
CANSAT21G1779 Cannabis sativa HOM05D005880 ORTHO05D007114 2.2e-27 126.7 111 62.2
Ah.06g193070 Amaranthus hybridus HOM05D005880 ORTHO05D007114 9.3e-26 121.3 125 56.8
Actinidia26146 Actinidia chinensis HOM05D005880 ORTHO05D007114 2.7e-25 119.8 119 57.1
Phvul.002G250100 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 6.0e-25 118.6 134 54.5
DCAR_029253 Daucus carota HOM05D005880 ORTHO05D007114 1.0e-24 117.9 143 47.6
HanXRQChr10g0290391 Helianthus annuus HOM05D005880 ORTHO05D007114 3.9e-24 115.9 142 49.3
HanXRQChr10g0301391 Helianthus annuus HOM05D005880 ORTHO05D007114 3.9e-24 115.9 142 49.3
CSS0016002 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 5.1e-24 115.5 141 51.8
CDE08G1156 Ceratophyllum demersum HOM05D005880 ORTHO05D007114 9.0e-21 104.8 147 42.9
VMungo0251G0848 Vigna mungo HOM05D005880 ORTHO05D007114 2.0e-20 103.6 134 47.8
Gohir.A02G126300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 4.2e-18 95.9 79 63.3
AUR62019202 Chenopodium quinoa HOM05D005880 ORTHO05D007114 1.2e-17 94.4 116 51.7
MELO3C019478.2 Cucumis melo HOM05D005880 ORTHO05D007114 2.3e-16 90.1 72 65.3
arahy.Tifrunner.gnm1.ann1.3M3641 Arachis hypogaea HOM05D005880 ORTHO05D007114 3.3e-15 86.3 103 52.4
arahy.Tifrunner.gnm1.ann1.05MEX4 Arachis hypogaea HOM05D005880 ORTHO05D007114 1.6e-14 84.0 103 51.5
Dinv19366 Davidia involucrata HOM05D005880 ORTHO05D007114 4.8e-14 82.4 72 65.3
Lsat_1_v5_gn_5_89321 Lactuca sativa HOM05D005880 ORTHO05D007114 8.1e-14 81.6 91 56.0
CAN.G1577.19 Capsicum annuum HOM05D005880 ORTHO05D007114 1.5e-12 77.4 61 68.9
SalBow5G4729 Salvia bowleyana HOM05D005880 ORTHO05D007114 1.5e-12 77.4 90 48.9
arahy.Tifrunner.gnm1.ann1.L44J93 Arachis hypogaea HOM05D000101 ORTHO05D003282 4.5e-12 75.9 55 74.5
Oeu025682.1 Olea europaea HOM05D005880 ORTHO05D007114 9.3e-10 68.2 89 52.8
Gohir.A06G179950 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.1e-09 67.0 69 55.1
Gohir.D04G172050 Gossypium hirsutum HOM05D005880 ORTHO05D007114 3.9e-08 62.8 100 50.0
Gorai.012G161100 Gossypium raimondii HOM05D005880 ORTHO05D007114 3.9e-08 62.8 100 50.0
ATR0794G127 Amborella trichopoda HOM05D005880 ORTHO05D007114 8.7e-08 61.6 130 33.8
Gohir.A04G127300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.8e-06 56.6 69 58.0
SalBow1G5664 Salvia bowleyana HOM05D005880 ORTHO05D007114 2.8e-06 56.6 84 46.4
HPP92_024638 Vanilla planifolia HOM05D005880 ORTHO05D007114 2.8e-06 56.6 136 33.8


User provided reference genes

Program Settings