Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0009100 Salix brachista HOM05D005880 ORTHO05D007114 6.9e-70 267.3 148 100.0
Sabra16G0009300 Salix brachista HOM05D005880 ORTHO05D007114 8.0e-66 253.8 145 97.2
Potri.016G004300 Populus trichocarpa HOM05D005880 ORTHO05D007114 7.0e-62 240.7 148 90.5
Potri.006G003600 Populus trichocarpa HOM05D005880 ORTHO05D007114 6.7e-57 224.2 148 83.8
COL.COLO4_17867 Corchorus olitorius HOM05D005880 ORTHO05D007114 1.6e-53 213.0 148 77.7
arahy.Tifrunner.gnm1.ann1.G2QNI1 Arachis hypogaea HOM05D005880 ORTHO05D007114 7.7e-53 210.7 148 77.7
Duzib052G0157 Durio zibethinus HOM05D005880 ORTHO05D007114 7.7e-53 210.7 148 77.7
Manes.07G015600 Manihot esculenta HOM05D005880 ORTHO05D007114 1.0e-52 210.3 148 77.0
Duzib132G0062 Durio zibethinus HOM05D005880 ORTHO05D007114 1.7e-52 209.5 148 76.4
Thecc.02G038300 Theobroma cacao HOM05D005880 ORTHO05D007114 1.7e-52 209.5 148 77.0
QL11p018494 Quercus lobata HOM05D005880 ORTHO05D007114 5.0e-52 208.0 147 75.5
Haze_01670 Corylus avellana HOM05D005880 ORTHO05D007114 1.1e-51 206.8 148 74.3
Manes.10G129200 Manihot esculenta HOM05D005880 ORTHO05D007114 1.5e-51 206.5 148 75.7
Glyma.15G046700 Glycine max HOM05D005880 ORTHO05D007114 1.9e-51 206.1 148 75.7
Gohir.A01G000600 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.9e-51 206.1 148 75.7
Gohir.D01G000400 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.9e-51 206.1 148 75.7
Gorai.002G001000 Gossypium raimondii HOM05D005880 ORTHO05D007114 1.9e-51 206.1 148 75.7
Lj6g0008702 Lotus japonicus HOM05D005880 ORTHO05D007114 5.5e-51 204.5 148 73.6
VMungo0540G2478 Vigna mungo HOM05D005880 ORTHO05D007114 2.1e-50 202.6 148 73.6
Cpa.g.sc113.61 Carica papaya HOM05D005880 ORTHO05D007114 1.0e-49 200.3 148 72.3
RcHm_v2.0_Chr7g0222451 Rosa chinensis HOM05D005880 ORTHO05D007114 1.4e-49 199.9 148 72.3
MD15G1423100 Malus domestica HOM05D005880 ORTHO05D007114 2.3e-49 199.1 148 70.9
Phvul.006G214500 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 3.0e-49 198.7 148 72.3
CiPaw.05G044300 Carya illinoinensis HOM05D005880 ORTHO05D007114 4.0e-49 198.4 148 72.3
CiPaw.06G147400 Carya illinoinensis HOM05D005880 ORTHO05D007114 4.0e-49 198.4 143 74.8
Medtr2g007190 Medicago truncatula HOM05D005880 ORTHO05D007114 1.2e-48 196.8 148 73.0
FvH4_5g29530 Fragaria vesca HOM05D005880 ORTHO05D007114 2.0e-48 196.1 148 71.6
MD08G1229100 Malus domestica HOM05D005880 ORTHO05D007114 5.7e-48 194.5 148 69.6
GSVIVG01022927001 Vitis vinifera HOM05D005880 ORTHO05D007114 5.7e-48 194.5 148 69.6
CsaV3_3G018850 Cucumis sativus L. HOM05D005880 ORTHO05D007114 2.2e-47 192.6 148 68.9
ClCG05G009710 Citrullus lanatus HOM05D005880 ORTHO05D007114 1.8e-46 189.5 148 68.9
FAN18G2654 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.8e-46 189.5 144 70.8
Cc02_g22480 Coffea canephora HOM05D005880 ORTHO05D007114 7.0e-46 187.6 150 70.7
FAN04G0122 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.6e-45 186.4 144 69.4
Prupe.1G568400 Prunus persica HOM05D005880 ORTHO05D007114 2.0e-45 186.0 143 70.6
FAN08G1303 Fragaria x ananassa HOM05D005880 ORTHO05D007114 2.7e-45 185.7 143 69.9
Atru.chr6.645 Acer truncatum HOM05D005880 ORTHO05D007114 2.3e-44 182.6 148 66.2
Sed0000042 Sechium edule HOM05D005880 ORTHO05D007114 1.1e-43 180.3 148 65.5
TAR376G0254 Trochodendron aralioides HOM05D005880 ORTHO05D007114 1.5e-43 179.9 150 67.3
TAR628G0071 Trochodendron aralioides HOM05D005880 ORTHO05D007114 2.5e-43 179.1 150 66.7
Dinv24281 Davidia involucrata HOM05D005880 ORTHO05D007114 3.3e-43 178.7 148 68.2
CANSAT54G2878 Cannabis sativa HOM05D005880 ORTHO05D007114 9.5e-43 177.2 148 66.2
Ciclev10002788m.g Citrus clementina HOM05D005880 ORTHO05D007114 1.6e-42 176.4 148 67.6
Aqoxy6G00184 Aquilegia oxysepala HOM05D005880 ORTHO05D007114 2.1e-42 176.0 152 65.1
Rhsim11G0129500 Rhododendron simsii HOM05D005880 ORTHO05D007114 4.7e-42 174.9 150 64.7
Nn5g28217 Nelumbo nucifera HOM05D005880 ORTHO05D007114 8.0e-42 174.1 140 66.4
Hma1.2p1_0217F.1_g092030 Hydrangea macrophylla HOM05D005880 ORTHO05D007114 2.3e-41 172.6 150 67.3
TWI59G1122 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 2.3e-41 172.6 148 65.5
Ah.04g161590 Amaranthus hybridus HOM05D005880 ORTHO05D007114 6.8e-41 171.0 148 65.5
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 2.6e-40 169.1 143 67.1
PGSC0003DMG400023792 Solanum tuberosum HOM05D005880 ORTHO05D007114 9.8e-40 167.2 151 65.6
Sopen01g046630 Solanum pennellii HOM05D005880 ORTHO05D007114 1.3e-39 166.8 151 64.9
PGR042G3410 Punica granatum HOM05D005880 ORTHO05D007114 1.7e-39 166.4 148 64.2
Eucgr.G00579 Eucalyptus grandis HOM05D005880 ORTHO05D007114 2.8e-39 165.6 148 60.8
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 3.7e-39 165.2 120 75.8
Nitab4.5_0010062g0030 Nicotiana tabacum HOM05D005880 ORTHO05D007114 3.7e-39 165.2 152 63.8
arahy.Tifrunner.gnm1.ann1.IQ7NU0 Arachis hypogaea HOM05D005880 ORTHO05D007114 4.9e-39 164.9 119 76.5
arahy.Tifrunner.gnm1.ann1.JTZ9FV Arachis hypogaea HOM05D005880 ORTHO05D007114 4.9e-39 164.9 119 75.6
arahy.Tifrunner.gnm1.ann1.REH2VN Arachis hypogaea HOM05D005880 ORTHO05D007114 4.9e-39 164.9 119 76.5
ECA234G2605 Erigeron canadensis HOM05D005880 ORTHO05D007114 6.3e-39 164.5 150 63.3
Solyc01g104190.2 Solanum lycopersicum HOM05D005880 ORTHO05D007114 1.1e-38 163.7 151 64.2
Lsat_1_v5_gn_5_109301 Lactuca sativa HOM05D005880 ORTHO05D007114 1.4e-38 163.3 144 63.9
Nn1g08723 Nelumbo nucifera HOM05D005880 ORTHO05D007114 1.6e-37 159.8 138 63.0
arahy.Tifrunner.gnm1.ann1.MS6DZN Arachis hypogaea HOM05D005880 ORTHO05D007114 2.0e-37 159.5 121 71.9
TWI23G0568 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 3.5e-37 158.7 148 64.9
arahy.Tifrunner.gnm1.ann1.BDEX7B Arachis hypogaea HOM05D005880 ORTHO05D007114 3.8e-36 155.2 114 75.4
Gohir.D02G233200 Gossypium hirsutum HOM05D005880 ORTHO05D007114 3.8e-36 155.2 149 59.7
Gorai.005G261100 Gossypium raimondii HOM05D005880 ORTHO05D007114 3.8e-36 155.2 149 59.7
Nitab4.5_0002245g0020 Nicotiana tabacum HOM05D005880 ORTHO05D007114 3.8e-36 155.2 152 61.8
Gohir.A03G211800 Gossypium hirsutum HOM05D005880 ORTHO05D007114 6.6e-36 154.5 149 59.1
Oeu045943.1 Olea europaea HOM05D005880 ORTHO05D007114 1.5e-35 153.3 132 65.9
AL2G15640 Arabidopsis lyrata HOM05D005880 ORTHO05D007114 2.5e-35 152.5 148 56.8
arahy.Tifrunner.gnm1.ann1.90JL3B Arachis hypogaea HOM05D005880 ORTHO05D007114 2.5e-35 152.5 114 74.6
CAN.G1577.17 Capsicum annuum HOM05D005880 ORTHO05D007114 2.5e-35 152.5 143 62.2
TPR.G23065 Trifolium pratense HOM05D005880 ORTHO05D007114 4.3e-35 151.8 148 60.1
MBI06_g20717_MAGBIO Magnolia biondii HOM05D005880 ORTHO05D007114 7.3e-35 151.0 141 56.7
Migut.B00838 Erythranthe guttata HOM05D005880 ORTHO05D007114 9.5e-35 150.6 150 58.0
CiPaw.04G102300 Carya illinoinensis HOM05D005880 ORTHO05D007114 1.2e-34 150.2 114 71.1
EL10Ac4g10345 Beta vulgaris HOM05D005880 ORTHO05D007114 1.6e-34 149.8 148 60.1
Psat1g224760 Pisum sativum HOM05D005880 ORTHO05D007114 2.8e-34 149.1 119 69.7
Aa31LG2G9680 Aethionema arabicum HOM05D005880 ORTHO05D007114 3.6e-34 148.7 148 54.7
Lalb_Chr15g0090661 Lupinus albus HOM05D005880 ORTHO05D007114 4.7e-34 148.3 121 69.4
CSS0009830 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 6.1e-34 147.9 150 60.0
Peaxi162Scf00011g00326 Petunia axillaris HOM05D005880 ORTHO05D007114 2.3e-33 146.0 155 56.1
CSS0021530 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 5.2e-33 144.8 150 58.7
AUR62000032 Chenopodium quinoa HOM05D005880 ORTHO05D007114 5.2e-33 144.8 148 58.8
SGA_v2.0_scaffold1G00307 Striga asiatica HOM05D002729 ORTHO05D003163 6.8e-33 144.4 141 56.7
Gohir.A08G134100 Gossypium hirsutum HOM05D005880 ORTHO05D007114 8.9e-33 144.1 144 58.3
BcaB07g31236 Brassica carinata HOM05D005880 ORTHO05D007114 2.6e-32 142.5 148 54.1
BcaC04g22278 Brassica carinata HOM05D005880 ORTHO05D007114 4.4e-32 141.7 148 53.4
C09p21370 Brassica napus HOM05D005880 ORTHO05D007114 4.4e-32 141.7 148 53.4
BolC9t55037H Brassica oleracea HOM05D005880 ORTHO05D007114 4.4e-32 141.7 148 53.4
FAN13G3279 Fragaria x ananassa HOM05D005880 ORTHO05D007114 4.4e-32 141.7 118 65.3
CARHR051910 Cardamine hirsuta HOM05D005880 ORTHO05D007114 5.8e-32 141.4 148 54.7
Sp2g03790 Schrenkiella parvula HOM05D005880 ORTHO05D007114 5.8e-32 141.4 148 54.1
THA.LOC104819299 Tarenaya hassleriana HOM05D005880 ORTHO05D007114 5.8e-32 141.4 148 52.7
Thhalv10023746m.g Eutrema salsugineum HOM05D005880 ORTHO05D007114 7.5e-32 141.0 148 53.4
Sed0012668 Sechium edule HOM05D005880 ORTHO05D007114 7.5e-32 141.0 149 57.7
Carub.0002s0442 Capsella rubella HOM05D005880 ORTHO05D007114 9.8e-32 140.6 148 54.1
AT1G60870 Arabidopsis thaliana HOM05D005880 ORTHO05D007114 1.3e-31 140.2 148 52.7
A09p17170 Brassica napus HOM05D005880 ORTHO05D007114 1.7e-31 139.8 148 52.7
BraA09t37350Z Brassica rapa HOM05D005880 ORTHO05D007114 1.7e-31 139.8 148 52.7
CSS0048748 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 2.2e-31 139.4 138 59.4
PSO528G0075 Papaver somniferum HOM05D005880 ORTHO05D007114 1.9e-30 136.3 151 54.3
Sc16g0012020 Simmondsia chinensis HOM05D005880 ORTHO05D007114 7.0e-30 134.4 148 53.4
CANSAT35G1534 Cannabis sativa HOM05D005880 ORTHO05D007114 1.6e-29 133.3 112 64.3
DCAR_029253 Daucus carota HOM05D005880 ORTHO05D007114 6.6e-28 127.9 149 49.7
CANSAT21G1779 Cannabis sativa HOM05D005880 ORTHO05D007114 8.6e-28 127.5 111 63.1
HanXRQChr10g0290391 Helianthus annuus HOM05D005880 ORTHO05D007114 5.6e-27 124.8 150 51.3
HanXRQChr10g0301391 Helianthus annuus HOM05D005880 ORTHO05D007114 5.6e-27 124.8 150 51.3
Phvul.002G250100 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 1.2e-26 123.6 149 52.3
Actinidia26146 Actinidia chinensis HOM05D005880 ORTHO05D007114 2.8e-26 122.5 119 58.8
CSS0016002 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 2.8e-26 122.5 151 53.0
Ah.06g193070 Amaranthus hybridus HOM05D005880 ORTHO05D007114 1.4e-25 120.2 125 56.0
CDE08G1156 Ceratophyllum demersum HOM05D005880 ORTHO05D007114 4.9e-23 111.7 148 43.9
VMungo0251G0848 Vigna mungo HOM05D005880 ORTHO05D007114 8.3e-23 110.9 149 47.7
AUR62019202 Chenopodium quinoa HOM05D005880 ORTHO05D007114 3.0e-20 102.4 119 54.6
Gohir.A02G126300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.5e-19 100.1 79 65.8
MELO3C019478.2 Cucumis melo HOM05D005880 ORTHO05D007114 1.2e-18 97.1 75 68.0
arahy.Tifrunner.gnm1.ann1.3M3641 Arachis hypogaea HOM05D005880 ORTHO05D007114 2.6e-16 89.4 103 53.4
arahy.Tifrunner.gnm1.ann1.05MEX4 Arachis hypogaea HOM05D005880 ORTHO05D007114 1.3e-15 87.0 103 52.4
Lsat_1_v5_gn_5_89321 Lactuca sativa HOM05D005880 ORTHO05D007114 1.7e-15 86.7 91 58.2
Dinv19366 Davidia involucrata HOM05D005880 ORTHO05D007114 1.4e-14 83.6 72 65.3
Oeu025682.1 Olea europaea HOM05D005880 ORTHO05D007114 1.2e-13 80.5 92 57.6
arahy.Tifrunner.gnm1.ann1.L44J93 Arachis hypogaea HOM05D000101 ORTHO05D003282 2.1e-13 79.7 55 78.2
CAN.G1577.19 Capsicum annuum HOM05D005880 ORTHO05D007114 6.0e-13 78.2 61 70.5
SalBow5G4729 Salvia bowleyana HOM05D005880 ORTHO05D007114 1.7e-12 76.6 90 48.9
Gohir.A06G179950 Gossypium hirsutum HOM05D005880 ORTHO05D007114 5.6e-11 71.6 69 56.5
Gohir.D04G172050 Gossypium hirsutum HOM05D005880 ORTHO05D007114 6.2e-10 68.2 100 52.0
Gorai.012G161100 Gossypium raimondii HOM05D005880 ORTHO05D007114 6.2e-10 68.2 100 52.0
SalBow1G5664 Salvia bowleyana HOM05D005880 ORTHO05D007114 8.1e-10 67.8 92 50.0
ATR0794G127 Amborella trichopoda HOM05D005880 ORTHO05D007114 1.2e-08 63.9 130 34.6
Gohir.A04G127300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 9.9e-08 60.8 69 59.4
HPP92_024638 Vanilla planifolia HOM05D005880 ORTHO05D007114 3.8e-07 58.9 136 34.6
Oeu000185.1 Olea europaea HOM05D005880 ORTHO05D007114 1.4e-06 57.0 90 46.7


User provided reference genes

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