Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra16G0002200 Salix brachista HOM05D007829 ORTHO05D009903 1.5e-167 592.8 298 100.0
Sabra16G0015800 Salix brachista HOM05D007829 ORTHO05D009903 4.3e-135 485.0 281 89.3
Potri.016G013200 Populus trichocarpa HOM05D007829 ORTHO05D009903 1.2e-108 397.1 282 75.2
Manes.08G071000 Manihot esculenta HOM05D007829 ORTHO05D009903 1.3e-75 287.3 279 57.0
CiPaw.10G078200 Carya illinoinensis HOM05D007829 ORTHO05D009903 3.2e-66 256.1 274 52.9
Thecc.06G233800 Theobroma cacao HOM05D007829 ORTHO05D009903 1.1e-58 231.1 223 55.6
Gohir.D10G008900 Gossypium hirsutum HOM05D007829 ORTHO05D009903 2.7e-57 226.5 269 47.2
CSS0014217 Camellia sinensis var. sinensis HOM05D007829 ORTHO05D009903 3.6e-57 226.1 277 48.0
TWI38G1785 Tripterygium wilfordii HOM05D007829 ORTHO05D009903 3.6e-57 226.1 287 47.7
Rhsim02G0099400 Rhododendron simsii HOM05D007829 ORTHO05D009903 4.7e-57 225.7 256 46.9
Gohir.A10G009200 Gossypium hirsutum HOM05D007829 ORTHO05D009903 6.1e-57 225.3 245 50.2
Prupe.4G010000 Prunus persica HOM05D007829 ORTHO05D009903 1.0e-56 224.6 231 52.4
Actinidia39272 Actinidia chinensis HOM05D007829 ORTHO05D009903 1.8e-56 223.8 223 53.4
Gorai.011G009700 Gossypium raimondii HOM05D007829 ORTHO05D009903 1.8e-56 223.8 235 50.6
Dinv07407 Davidia involucrata HOM05D007829 ORTHO05D009903 1.1e-55 221.1 280 47.5
COL.COLO4_31889 Corchorus olitorius HOM05D007829 ORTHO05D009903 6.3e-54 215.3 265 46.0
Hma1.2p1_0657F.1_g197120 Hydrangea macrophylla HOM05D007829 ORTHO05D009903 1.1e-53 214.5 273 47.6
MD10G1332100 Malus domestica HOM05D007829 ORTHO05D009903 3.5e-52 209.5 252 48.0
Ciclev10018278m.g Citrus clementina HOM05D007829 ORTHO05D009903 1.5e-50 204.1 171 61.4
PSO675G8147 Papaver somniferum HOM05D007829 ORTHO05D009903 1.9e-50 203.8 202 52.0
Cpa.g.sc75.113 Carica papaya HOM05D007829 ORTHO05D009903 4.2e-50 202.6 198 49.0
Nn1g07397 Nelumbo nucifera HOM05D007829 ORTHO05D009903 1.2e-49 201.1 222 44.6
PSO541G5076 Papaver somniferum HOM05D007829 ORTHO05D009903 1.4e-48 197.6 202 51.0
Duzib235G0645 Durio zibethinus HOM05D007829 ORTHO05D009903 2.3e-48 196.8 168 61.3
Aqoxy2G02687 Aquilegia oxysepala HOM05D007829 ORTHO05D009903 2.0e-47 193.7 219 45.2
TAR627G0564 Trochodendron aralioides HOM05D007829 ORTHO05D009903 9.8e-47 191.4 255 44.7
Lj6g0010113 Lotus japonicus HOM05D007829 ORTHO05D009903 2.2e-46 190.3 211 44.5
QL05p069622 Quercus lobata HOM05D007829 ORTHO05D009903 2.8e-46 189.9 342 40.6
TAR627G1193 Trochodendron aralioides HOM05D007829 ORTHO05D009903 2.4e-45 186.8 221 46.6
CDE11G1237 Ceratophyllum demersum HOM05D007829 ORTHO05D009903 2.7e-44 183.3 237 40.9
Medtr2g025760 Medicago truncatula HOM05D007829 ORTHO05D009903 3.5e-44 183.0 217 42.9
Psat1g175960 Pisum sativum HOM05D007829 ORTHO05D009903 5.9e-44 182.2 257 40.9
Eucgr.D01411 Eucalyptus grandis HOM05D007829 ORTHO05D009903 1.0e-43 181.4 188 50.0
Cc00_g34400 Coffea canephora HOM05D007829 ORTHO05D009903 1.7e-43 180.6 154 57.1
Migut.M01399 Erythranthe guttata HOM05D007829 ORTHO05D009903 5.0e-43 179.1 188 49.5
arahy.Tifrunner.gnm1.ann1.G424KC Arachis hypogaea HOM05D007829 ORTHO05D009903 1.5e-42 177.6 211 43.6
Sc05g0009620 Simmondsia chinensis HOM05D007829 ORTHO05D009903 9.5e-42 174.9 206 44.7
Solyc11g012300.1 Solanum lycopersicum HOM05D007829 ORTHO05D009903 1.6e-41 174.1 263 40.7
PGR004G1136 Punica granatum HOM05D007829 ORTHO05D009903 4.7e-41 172.6 230 42.6
DCAR_004889 Daucus carota HOM05D003856 ORTHO05D004547 1.0e-40 171.4 161 52.8
CARHR229280 Cardamine hirsuta HOM05D007829 ORTHO05D009903 1.4e-40 171.0 183 47.5
THA.LOC104813576 Tarenaya hassleriana HOM05D007829 ORTHO05D009903 5.2e-40 169.1 181 46.4
SGA_v2.0_scaffold4G01872 Striga asiatica HOM05D007829 ORTHO05D009903 4.4e-39 166.0 201 44.3
FAN21G3309 Fragaria x ananassa HOM05D007829 ORTHO05D009903 4.9e-38 162.5 284 37.3
FvH4_3g00940 Fragaria vesca HOM05D007829 ORTHO05D009903 6.3e-38 162.2 282 36.9
Sopen11g007080 Solanum pennellii HOM05D007829 ORTHO05D009903 6.3e-38 162.2 153 53.6
PGSC0003DMG400013350 Solanum tuberosum HOM05D007829 ORTHO05D009903 3.1e-37 159.8 153 53.6
RcHm_v2.0_Chr5g0001461 Rosa chinensis HOM05D007829 ORTHO05D009903 1.6e-36 157.5 286 37.1
C01p16640 Brassica napus HOM05D007829 ORTHO05D009903 3.8e-35 152.9 185 41.6
Oeu002768.1 Olea europaea HOM05D007829 ORTHO05D009903 5.0e-35 152.5 186 43.0
VMungo0540G1426 Vigna mungo HOM05D007829 ORTHO05D009903 5.0e-35 152.5 223 39.5
BolC1t01611H Brassica oleracea HOM05D007829 ORTHO05D009903 8.6e-35 151.8 181 42.0
CANSAT56G1477 Cannabis sativa HOM05D007829 ORTHO05D009903 8.6e-35 151.8 218 41.3
BraA01t01318Z Brassica rapa HOM05D007829 ORTHO05D009903 1.5e-34 151.0 186 41.4
BcaC09g51100 Brassica carinata HOM05D007829 ORTHO05D009903 2.5e-34 150.2 181 41.4
A01p13730 Brassica napus HOM05D007829 ORTHO05D009903 2.8e-33 146.7 196 38.8
FAN25G0937 Fragaria x ananassa HOM05D007829 ORTHO05D009903 6.1e-33 145.6 245 37.1
TPR.G13103 Trifolium pratense HOM05D007829 ORTHO05D009903 3.0e-32 143.3 173 43.4
Sp7g20500 Schrenkiella parvula HOM05D007829 ORTHO05D009903 5.2e-32 142.5 202 37.6
Glyma.09G010400 Glycine max HOM05D007829 ORTHO05D009903 8.9e-32 141.7 212 37.7
Phvul.006G143000 Phaseolus vulgaris HOM05D007829 ORTHO05D009903 1.5e-31 141.0 227 37.0
TAR629G0037 Trochodendron aralioides HOM05D007829 ORTHO05D009903 1.5e-31 141.0 116 55.2
Cfa000096 Carpinus fangiana HOM05D007829 ORTHO05D009903 3.4e-31 139.8 134 56.7
Glyma.15G114900 Glycine max HOM05D007829 ORTHO05D009903 9.8e-31 138.3 213 38.0
ATR0712G049 Amborella trichopoda HOM05D007829 ORTHO05D009903 1.3e-30 137.9 154 40.3
Peaxi162Scf00352g00215 Petunia axillaris HOM05D007829 ORTHO05D009903 2.9e-30 136.7 222 35.6
Lalb_Chr15g0088001 Lupinus albus HOM05D007829 ORTHO05D009903 6.4e-30 135.6 221 36.7
AT4G22370 Arabidopsis thaliana HOM05D007829 ORTHO05D009903 5.4e-29 132.5 182 40.1
Carub.0007s1893 Capsella rubella HOM05D007829 ORTHO05D009903 3.0e-27 126.7 159 40.9
MBI19_g06149_MAGBIO Magnolia biondii HOM05D007829 ORTHO05D009903 7.3e-26 122.1 146 43.8
SalBow8G1028 Salvia bowleyana HOM05D007829 ORTHO05D009903 2.8e-25 120.2 188 37.8
TPR.G18790 Trifolium pratense HOM05D007829 ORTHO05D009903 1.7e-22 110.9 129 43.4
Thhalv10027004m.g Eutrema salsugineum HOM05D007829 ORTHO05D009903 2.2e-22 110.5 123 42.3
AL7G31240 Arabidopsis lyrata HOM05D007829 ORTHO05D009903 3.2e-21 106.7 91 51.6
unitig_5.g30996 Utricularia gibba HOM05D000093 ORTHO05D001309 3.0e-19 100.1 183 32.2
Aa31LG6G4470 Aethionema arabicum HOM05D007829 ORTHO05D009903 4.3e-18 96.3 134 37.3
Sed0017863 Sechium edule HOM05D007829 ORTHO05D009903 5.6e-18 95.9 164 34.1
unitig_748.g7131 Utricularia gibba HOM05D007829 ORTHO05D009903 3.2e-13 80.1 144 36.1
ClCG01G021470 Citrullus lanatus HOM05D007829 ORTHO05D009903 4.1e-13 79.7 244 25.0
MBI16_g31712_MAGBIO Magnolia biondii HOM05D007829 ORTHO05D009903 4.6e-12 76.3 204 27.0
Thecc.03G284700 Theobroma cacao HOM05D002745 ORTHO05D002945 3.0e-11 73.6 187 26.2
CiPaw.11G131300 Carya illinoinensis HOM05D002745 ORTHO05D002945 3.9e-11 73.2 161 28.6
DCAR_000629 Daucus carota HOM05D002745 ORTHO05D002945 5.1e-11 72.8 149 29.5
SEGI_16879 Sequoiadendron giganteum HOM05D002745 ORTHO05D002945 1.9e-10 70.9 220 25.9
CsaV3_6G048490 Cucumis sativus L. HOM05D007829 ORTHO05D009903 5.6e-10 69.3 144 27.8
Duzib205G0538 Durio zibethinus HOM05D002745 ORTHO05D002945 9.5e-10 68.6 160 26.2
arahy.Tifrunner.gnm1.ann1.10XUBW Arachis hypogaea HOM05D007829 ORTHO05D009903 1.2e-09 68.2 73 46.6
CANSAT56G3529 Cannabis sativa HOM05D002745 ORTHO05D002945 2.1e-09 67.4 163 29.4
Eucgr.E00649 Eucalyptus grandis HOM05D002745 ORTHO05D002945 2.1e-09 67.4 130 29.2
PSO017G3694 Papaver somniferum HOM05D002745 ORTHO05D002945 2.1e-09 67.4 181 30.9
Solyc11g012310.1 Solanum lycopersicum HOM05D007829 ORTHO05D009903 2.1e-09 67.4 84 41.7
Cpa.g.sc21.67 Carica papaya HOM05D002745 ORTHO05D002945 2.8e-09 67.0 140 28.6
Lsat_1_v5_gn_6_4781 Lactuca sativa HOM05D002745 ORTHO05D002945 2.8e-09 67.0 191 28.3
TWI18G0548 Tripterygium wilfordii HOM05D002745 ORTHO05D002945 6.2e-09 65.9 138 30.4
CSS0032449 Camellia sinensis var. sinensis HOM05D002745 ORTHO05D002945 8.1e-09 65.5 133 28.6
ECA233G2193 Erigeron canadensis HOM05D002745 ORTHO05D002945 8.1e-09 65.5 131 31.3
Gorai.008G249500 Gossypium raimondii HOM05D002745 ORTHO05D002945 8.1e-09 65.5 150 28.7
Gohir.A12G234200 Gossypium hirsutum HOM05D002745 ORTHO05D002945 1.1e-08 65.1 150 29.3
Gohir.D12G233100 Gossypium hirsutum HOM05D002745 ORTHO05D002945 1.1e-08 65.1 150 28.7
Manes.01G058300 Manihot esculenta HOM05D002745 ORTHO05D002945 1.1e-08 65.1 237 25.3
PGR042G0864 Punica granatum HOM05D002745 ORTHO05D002945 1.1e-08 65.1 107 31.8
Dinv38911 Davidia involucrata HOM05D002745 ORTHO05D002945 1.4e-08 64.7 154 27.9
Nitab4.5_0015422g0020 Nicotiana tabacum HOM05D007829 ORTHO05D009903 1.4e-08 64.7 63 49.2
Migut.E01200 Erythranthe guttata HOM05D002745 ORTHO05D002945 2.3e-08 63.9 155 29.7
Medtr5g010050 Medicago truncatula HOM05D002745 ORTHO05D002945 2.3e-08 63.9 171 25.7
BolC6t39614H Brassica oleracea HOM05D002745 ORTHO05D002945 3.1e-08 63.5 169 29.0
Rhsim07G0088000 Rhododendron simsii HOM05D002745 ORTHO05D002945 3.1e-08 63.5 151 28.5
CiPaw.03G016400 Carya illinoinensis HOM05D002745 ORTHO05D002945 4.0e-08 63.2 132 31.8
Solyc12g056190.2 Solanum lycopersicum HOM05D002745 ORTHO05D002945 4.0e-08 63.2 176 30.1
C06p45630 Brassica napus HOM05D002745 ORTHO05D002945 6.8e-08 62.4 173 28.9
Prupe.5G104900 Prunus persica HOM05D002745 ORTHO05D002945 6.8e-08 62.4 151 27.8
arahy.Tifrunner.gnm1.ann1.DD74S9 Arachis hypogaea HOM05D002745 ORTHO05D002945 8.9e-08 62.0 134 26.9
PGR042G2485 Punica granatum HOM05D002745 ORTHO05D002945 8.9e-08 62.0 140 30.0
Solyc11g042620.3 Solanum lycopersicum HOM05D002745 ORTHO05D002945 8.9e-08 62.0 207 26.6
TPR.G6622 Trifolium pratense HOM05D002745 ORTHO05D002945 8.9e-08 62.0 149 26.2
Cpa.g.sc180.25 Carica papaya HOM05D002745 ORTHO05D002945 1.2e-07 61.6 160 24.4
FAN08G3121 Fragaria x ananassa HOM05D002745 ORTHO05D002945 1.2e-07 61.6 179 26.3
Oeu049859.2 Olea europaea HOM05D002745 ORTHO05D002945 1.2e-07 61.6 148 29.7
SalBow7G1915 Salvia bowleyana HOM05D000972 ORTHO05D007902 1.2e-07 61.6 138 31.2
Thhalv10019116m.g Eutrema salsugineum HOM05D002745 ORTHO05D002945 1.5e-07 61.2 140 31.4
FvH4_5g03000 Fragaria vesca HOM05D002745 ORTHO05D002945 1.5e-07 61.2 158 24.7
Sopen11g018770 Solanum pennellii HOM05D002745 ORTHO05D002945 1.5e-07 61.2 195 26.7
Actinidia33738 Actinidia chinensis HOM05D002745 ORTHO05D002945 2.0e-07 60.8 112 29.5
Sed0004172 Sechium edule HOM05D002745 ORTHO05D002945 2.0e-07 60.8 196 25.0
Sed0022750 Sechium edule HOM05D007829 ORTHO05D009903 2.6e-07 60.5 93 29.0
Atru.chr9.2137 Acer truncatum HOM05D002745 ORTHO05D002945 3.4e-07 60.1 159 25.2
Aqoxy5G00847 Aquilegia oxysepala HOM05D002745 ORTHO05D002945 3.4e-07 60.1 122 30.3
CAN.G1039.10 Capsicum annuum HOM05D002745 ORTHO05D002945 3.4e-07 60.1 125 29.6
CARHR291200 Cardamine hirsuta HOM05D002745 ORTHO05D002945 3.4e-07 60.1 122 30.3
Rhsim08G0115600 Rhododendron simsii HOM05D002745 ORTHO05D002945 3.4e-07 60.1 125 28.8
AL2G31140 Arabidopsis lyrata HOM05D002745 ORTHO05D002945 4.4e-07 59.7 202 26.2
AT1G71480 Arabidopsis thaliana HOM05D002745 ORTHO05D002945 4.4e-07 59.7 140 30.0
BcaC08g46583 Brassica carinata HOM05D002745 ORTHO05D002945 4.4e-07 59.7 169 26.6
BraA07t31339Z Brassica rapa HOM05D002745 ORTHO05D002945 4.4e-07 59.7 165 30.3
CDE05G0322 Ceratophyllum demersum HOM05D002745 ORTHO05D002945 4.4e-07 59.7 172 27.9
Eucgr.F02973 Eucalyptus grandis HOM05D002745 ORTHO05D002945 4.4e-07 59.7 140 30.7
Pp3c17_5580 Physcomitrium patens HOM05D002745 ORTHO05D002945 4.4e-07 59.7 151 30.5
Sopen12g028700 Solanum pennellii HOM05D002745 ORTHO05D002945 4.4e-07 59.7 132 29.5
Ciclev10022055m.g Citrus clementina HOM05D002745 ORTHO05D002945 5.8e-07 59.3 151 27.8
Cc03_g15810 Coffea canephora HOM05D002745 ORTHO05D002945 5.8e-07 59.3 153 26.8
Cc08_g15110 Coffea canephora HOM05D002745 ORTHO05D002945 5.8e-07 59.3 153 26.8
Cc10_g08820 Coffea canephora HOM05D002745 ORTHO05D002945 5.8e-07 59.3 182 24.7
Duzib213G0118 Durio zibethinus HOM05D002745 ORTHO05D002945 5.8e-07 59.3 216 26.4
Peaxi162Scf00078g00352 Petunia axillaris HOM05D002745 ORTHO05D002945 5.8e-07 59.3 160 28.1
QL12p032067 Quercus lobata HOM05D002745 ORTHO05D002945 5.8e-07 59.3 157 26.8
SGA_v2.0_scaffold118G32594 Striga asiatica HOM05D002745 ORTHO05D002945 5.8e-07 59.3 143 28.7
Eucgr.E00647 Eucalyptus grandis HOM05D002745 ORTHO05D002945 7.6e-07 58.9 149 24.8
Sp5g26630 Schrenkiella parvula HOM05D002745 ORTHO05D002945 7.6e-07 58.9 140 30.7
Actinidia27369 Actinidia chinensis HOM05D002745 ORTHO05D002945 9.9e-07 58.5 154 25.3
COL.COLO4_09994 Corchorus olitorius HOM05D002745 ORTHO05D002945 9.9e-07 58.5 125 28.8
Aa31LG4G9110 Aethionema arabicum HOM05D002745 ORTHO05D002945 1.3e-06 58.2 207 25.6
Carub.0002s1834 Capsella rubella HOM05D002745 ORTHO05D002945 1.3e-06 58.2 140 30.7
BcaC08g45773 Brassica carinata HOM05D002745 ORTHO05D002945 1.7e-06 57.8 173 27.7
A07p37760 Brassica napus HOM05D006690 ORTHO05D008541 1.7e-06 57.8 123 30.9
FvH4_2g14400 Fragaria vesca HOM05D002745 ORTHO05D002945 1.7e-06 57.8 154 25.3
Gohir.D13G157700 Gossypium hirsutum HOM05D002745 ORTHO05D002945 1.7e-06 57.8 160 26.2
Manes.18G119000 Manihot esculenta HOM05D002745 ORTHO05D002945 1.7e-06 57.8 121 28.9
SEGI_29799 Sequoiadendron giganteum HOM05D002745 ORTHO05D002945 1.7e-06 57.8 122 27.9
CANSAT21G1564 Cannabis sativa HOM05D002745 ORTHO05D002945 2.2e-06 57.4 179 25.1
RcHm_v2.0_Chr7g0231601 Rosa chinensis HOM05D002745 ORTHO05D002945 2.2e-06 57.4 157 24.8
Thecc.07G155300 Theobroma cacao HOM05D002745 ORTHO05D002945 2.2e-06 57.4 127 27.6
Gorai.013G178400 Gossypium raimondii HOM05D002745 ORTHO05D002945 2.9e-06 57.0 174 25.9
ECA232G4303 Erigeron canadensis HOM05D000972 ORTHO05D007902 3.8e-06 56.6 144 27.1
Oeu031426.3 Olea europaea HOM05D002745 ORTHO05D002945 3.8e-06 56.6 145 25.5
FAN20G0622 Fragaria x ananassa HOM05D002745 ORTHO05D002945 4.9e-06 56.2 142 24.6
Lsat_1_v5_gn_4_133100 Lactuca sativa HOM05D002745 ORTHO05D002945 4.9e-06 56.2 122 28.7
Sabra19G0085500 Salix brachista HOM05D002745 ORTHO05D002945 4.9e-06 56.2 154 27.3
Nitab4.5_0006500g0010 Nicotiana tabacum HOM05D002745 ORTHO05D002945 6.4e-06 55.8 132 29.5
ATR0712G092 Amborella trichopoda HOM05D007829 ORTHO05D009903 8.4e-06 55.5 54 46.3
ATR1089G026 Amborella trichopoda HOM05D002745 ORTHO05D002945 8.4e-06 55.5 180 26.1
FAN24G0836 Fragaria x ananassa HOM05D002745 ORTHO05D002945 8.4e-06 55.5 154 24.7


User provided reference genes

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