Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra15G0143400 Salix brachista HOM05D005662 ORTHO05D007004 1.6e-106 389.4 190 100.0
Potri.015G129900 Populus trichocarpa HOM05D005662 ORTHO05D007004 3.2e-59 232.3 189 64.6
Potri.012G128500 Populus trichocarpa HOM05D005662 ORTHO05D007004 3.3e-48 195.7 190 56.3
QL09p018886 Quercus lobata HOM05D005662 ORTHO05D007004 3.3e-48 195.7 179 57.0
Sabra12G0096500 Salix brachista HOM05D005662 ORTHO05D007004 1.6e-47 193.4 190 55.8
Ciclev10005797m.g Citrus clementina HOM05D005662 ORTHO05D007004 2.4e-46 189.5 178 55.1
TAR375G0912 Trochodendron aralioides HOM05D005662 ORTHO05D007004 2.4e-46 189.5 184 52.7
Dinv28543 Davidia involucrata HOM05D005662 ORTHO05D007004 4.0e-46 188.7 192 52.6
MSTRG.8809 Avicennia marina HOM05D005662 ORTHO05D007004 5.3e-46 188.3 182 53.8
MD07G1257000 Malus domestica HOM05D005662 ORTHO05D007004 5.3e-46 188.3 192 53.6
COL.COLO4_14166 Corchorus olitorius HOM05D005662 ORTHO05D007004 1.2e-45 187.2 187 52.9
Manes.06G137000 Manihot esculenta HOM05D005662 ORTHO05D007004 1.2e-45 187.2 191 52.4
PGR142G0586 Punica granatum HOM05D005662 ORTHO05D007004 3.4e-45 185.7 191 51.3
Dinv22971 Davidia involucrata HOM05D005662 ORTHO05D007004 7.6e-45 184.5 184 53.3
Prupe.2G281200 Prunus persica HOM05D005662 ORTHO05D007004 7.6e-45 184.5 178 55.6
TWI39G1176 Tripterygium wilfordii HOM05D005662 ORTHO05D007004 9.9e-45 184.1 189 51.3
TAR374G0299 Trochodendron aralioides HOM05D005662 ORTHO05D007004 9.9e-45 184.1 184 53.8
Nn4g26371 Nelumbo nucifera HOM05D005662 ORTHO05D007004 2.2e-44 183.0 183 50.8
Atru.chr1.651 Acer truncatum HOM05D005662 ORTHO05D007004 3.8e-44 182.2 174 55.2
Gohir.D07G210500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 4.9e-44 181.8 182 51.6
Gorai.001G237900 Gossypium raimondii HOM05D005662 ORTHO05D007004 4.9e-44 181.8 182 51.6
Thecc.03G160400 Theobroma cacao HOM05D005662 ORTHO05D007004 4.9e-44 181.8 185 52.4
CiPaw.03G096300 Carya illinoinensis HOM05D005662 ORTHO05D007004 6.4e-44 181.4 176 52.8
Gohir.A07G204500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 6.4e-44 181.4 179 51.4
Duzib205G1232 Durio zibethinus HOM05D005662 ORTHO05D007004 1.1e-43 180.6 177 52.5
Hma1.2p1_0654F.1_g196460 Hydrangea macrophylla HOM05D005662 ORTHO05D007004 1.1e-43 180.6 190 50.5
GSVIVG01018540001 Vitis vinifera HOM05D005662 ORTHO05D007004 1.1e-43 180.6 180 51.1
Eucgr.K00149 Eucalyptus grandis HOM05D005662 ORTHO05D007004 1.4e-43 180.3 187 50.8
Oeu039209.1 Olea europaea HOM05D005662 ORTHO05D007004 1.9e-43 179.9 180 52.2
Actinidia25029 Actinidia chinensis HOM05D005662 ORTHO05D007004 5.5e-43 178.3 188 49.5
THA.LOC104821401 Tarenaya hassleriana HOM05D005662 ORTHO05D007004 5.5e-43 178.3 192 49.5
Actinidia13561 Actinidia chinensis HOM05D005662 ORTHO05D007004 7.1e-43 177.9 188 50.5
Thhalv10004861m.g Eutrema salsugineum HOM05D005662 ORTHO05D007004 7.1e-43 177.9 191 49.2
FvH4_7g28050 Fragaria vesca HOM05D005662 ORTHO05D007004 7.1e-43 177.9 188 52.7
Nitab4.5_0000072g0480 Nicotiana tabacum HOM05D005662 ORTHO05D007004 9.3e-43 177.6 174 51.7
Nitab4.5_0000481g0050 Nicotiana tabacum HOM05D005662 ORTHO05D007004 1.2e-42 177.2 174 51.7
PGSC0003DMG400023012 Solanum tuberosum HOM05D005662 ORTHO05D007004 1.2e-42 177.2 172 50.0
Cc02_g04010 Coffea canephora HOM05D005662 ORTHO05D007004 3.5e-42 175.6 170 53.5
vmacro06774 Vaccinium macrocarpon HOM05D005662 ORTHO05D007004 3.5e-42 175.6 174 52.9
EL10Ac3g05805 Beta vulgaris HOM05D005662 ORTHO05D007004 4.6e-42 175.3 181 51.9
CANSAT56G2670 Cannabis sativa HOM05D005662 ORTHO05D007004 4.6e-42 175.3 176 51.1
CSS0015308 Camellia sinensis var. sinensis HOM05D005662 ORTHO05D007004 6.0e-42 174.9 181 51.9
Lsat_1_v5_gn_8_9401 Lactuca sativa HOM05D005662 ORTHO05D007004 6.0e-42 174.9 172 53.5
ECA232G3412 Erigeron canadensis HOM05D005662 ORTHO05D007004 7.9e-42 174.5 193 49.7
MD01G1184800 Malus domestica HOM05D005662 ORTHO05D007004 1.0e-41 174.1 173 50.9
Sopen03g023350 Solanum pennellii HOM05D005662 ORTHO05D007004 2.3e-41 172.9 173 50.3
Carub.0008s2298 Capsella rubella HOM05D005662 ORTHO05D007004 3.0e-41 172.6 188 46.8
MBI12_g31644_MAGBIO Magnolia biondii HOM05D005662 ORTHO05D007004 3.0e-41 172.6 171 51.5
Migut.F00442 Erythranthe guttata HOM05D005662 ORTHO05D007004 3.9e-41 172.2 173 51.4
HanXRQChr16g0512531 Helianthus annuus HOM05D005662 ORTHO05D007004 3.9e-41 172.2 186 51.1
CARHR276070 Cardamine hirsuta HOM05D005662 ORTHO05D007004 5.1e-41 171.8 192 47.4
RcHm_v2.0_Chr1g0374961 Rosa chinensis HOM05D005662 ORTHO05D007004 6.7e-41 171.4 181 50.8
AT5G62290 Arabidopsis thaliana HOM05D005662 ORTHO05D007004 8.7e-41 171.0 190 47.9
Solyc03g083540.3 Solanum lycopersicum HOM05D005662 ORTHO05D007004 1.9e-40 169.9 173 49.7
Peaxi162Scf01372g00048 Petunia axillaris HOM05D005662 ORTHO05D007004 2.5e-40 169.5 186 47.8
Sp2g25490 Schrenkiella parvula HOM05D005662 ORTHO05D007004 5.6e-40 168.3 191 46.1
AL8G39110 Arabidopsis lyrata HOM05D005662 ORTHO05D007004 7.4e-40 167.9 191 46.1
C03p64570 Brassica napus HOM05D000207 ORTHO05D001482 7.4e-40 167.9 190 46.8
BolC3t18716H Brassica oleracea HOM05D005662 ORTHO05D007004 7.4e-40 167.9 190 46.8
HanXRQChr08g0223561 Helianthus annuus HOM05D005662 ORTHO05D007004 1.1e-38 164.1 170 51.2
PSO782G3258 Papaver somniferum HOM05D005662 ORTHO05D007004 1.1e-38 164.1 184 45.1
BcaB07g29785 Brassica carinata HOM05D005662 ORTHO05D007004 1.4e-38 163.7 195 45.1
C02p62090 Brassica napus HOM05D005662 ORTHO05D007004 1.8e-38 163.3 193 45.6
CDE02G0217 Ceratophyllum demersum HOM05D005662 ORTHO05D007004 1.8e-38 163.3 184 45.7
Hund04625 Selenicereus undatus HOM05D005662 ORTHO05D007004 1.8e-38 163.3 191 45.5
SGA_v2.0_scaffold2G01165 Striga asiatica HOM05D005662 ORTHO05D007004 1.8e-38 163.3 184 49.5
PSO478G4436 Papaver somniferum HOM05D005662 ORTHO05D007004 3.1e-38 162.5 184 45.1
A02p42240 Brassica napus HOM05D005662 ORTHO05D007004 4.0e-38 162.2 192 44.8
Aa31LG11G1300 Aethionema arabicum HOM05D005662 ORTHO05D007004 5.3e-38 161.8 191 44.5
Duzib084G0609 Durio zibethinus HOM05D005662 ORTHO05D007004 5.8e-37 158.3 164 49.4
A06p29040 Brassica napus HOM05D000207 ORTHO05D001482 1.7e-36 156.8 195 43.1
Ca_00244_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 1.7e-36 156.8 181 47.0
BraA06t25849Z Brassica rapa HOM05D005662 ORTHO05D007004 2.2e-36 156.4 196 42.9
SGA_v2.0_scaffold486G52387 Striga asiatica HOM05D005662 ORTHO05D007004 2.9e-36 156.0 176 50.0
Aqoxy7G00656 Aquilegia oxysepala HOM05D005662 ORTHO05D007004 3.8e-36 155.6 183 45.9
Phvul.011G004300 Phaseolus vulgaris HOM05D005662 ORTHO05D007004 3.8e-36 155.6 159 50.3
SalBow4G2223 Salvia bowleyana HOM05D005662 ORTHO05D007004 3.8e-36 155.6 191 45.5
SalBow4G3324 Salvia bowleyana HOM05D005662 ORTHO05D007004 3.8e-36 155.6 191 45.5
Ca_30761_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 6.5e-36 154.8 181 46.4
Cpa.g.sc130.1 Carica papaya HOM05D005662 ORTHO05D007004 1.1e-35 154.1 93 74.2
BraA02t09152Z Brassica rapa HOM05D005662 ORTHO05D007004 1.4e-35 153.7 209 41.1
DCAR_015743 Daucus carota HOM05D005662 ORTHO05D007004 1.9e-35 153.3 191 44.0
Medtr4g033850 Medicago truncatula HOM05D005662 ORTHO05D007004 7.1e-35 151.4 177 46.9
VMungo1127G2067 Vigna mungo HOM05D005662 ORTHO05D007004 3.5e-34 149.1 175 46.9
Psat7g191960 Pisum sativum HOM05D005662 ORTHO05D007004 6.0e-34 148.3 183 45.4
Sed0027239 Sechium edule HOM05D005662 ORTHO05D007004 7.9e-34 147.9 173 45.7
Lsat_1_v5_gn_9_52481 Lactuca sativa HOM05D005662 ORTHO05D007004 3.0e-33 146.0 126 58.7
MELO3C005412.2 Cucumis melo HOM05D005662 ORTHO05D007004 1.1e-32 144.1 186 43.5
Lalb_Chr15g0077021 Lupinus albus HOM05D005662 ORTHO05D007004 1.1e-32 144.1 172 44.2
Glyma.09G233200 Glycine max HOM05D005662 ORTHO05D007004 2.5e-32 142.9 174 43.1
PSO063G7367 Papaver somniferum HOM05D005662 ORTHO05D007004 4.3e-32 142.1 98 63.3
AUR62016115 Chenopodium quinoa HOM05D005662 ORTHO05D007004 9.6e-32 141.0 139 55.4
Glyma.14G044000 Glycine max HOM05D005662 ORTHO05D007004 1.3e-31 140.6 156 44.2
Ah.13g067320 Amaranthus hybridus HOM05D005662 ORTHO05D007004 1.6e-31 140.2 93 68.8
TPR.G15119 Trifolium pratense HOM05D005662 ORTHO05D007004 2.1e-31 139.8 177 42.9
Haze_13835 Corylus avellana HOM05D005662 ORTHO05D007004 3.7e-31 139.0 170 45.3
ClCG01G005160 Citrullus lanatus HOM05D005662 ORTHO05D007004 4.8e-31 138.7 213 39.0
unitig_37.g12504 Utricularia gibba HOM05D005662 ORTHO05D007004 6.3e-31 138.3 165 44.2
arahy.Tifrunner.gnm1.ann1.93Q1AU Arachis hypogaea HOM05D005662 ORTHO05D007004 8.2e-31 137.9 173 43.9
Lj3g0023650 Lotus japonicus HOM05D005662 ORTHO05D007004 3.1e-30 136.0 188 42.0
Lalb_Chr04g0260971 Lupinus albus HOM05D005662 ORTHO05D007004 3.1e-30 136.0 175 41.7
arahy.Tifrunner.gnm1.ann1.TMT042 Arachis hypogaea HOM05D005662 ORTHO05D007004 4.1e-30 135.6 173 43.4
ATR0733G084 Amborella trichopoda HOM05D005662 ORTHO05D007004 5.3e-30 135.2 184 41.3
arahy.Tifrunner.gnm1.ann1.QSR7PX Arachis hypogaea HOM05D005662 ORTHO05D007004 2.0e-29 133.3 173 42.8
HPP92_004603 Vanilla planifolia HOM05D005662 ORTHO05D007004 5.9e-29 131.7 173 40.5
Rhsim03G0170700 Rhododendron simsii HOM05D005662 ORTHO05D007004 7.6e-29 131.3 99 62.6
Sc13g0007790 Simmondsia chinensis HOM05D005662 ORTHO05D007004 7.6e-29 131.3 101 61.4
arahy.Tifrunner.gnm1.ann1.LZP622 Arachis hypogaea HOM05D005662 ORTHO05D007004 1.0e-28 131.0 173 42.8
Sed0014362 Sechium edule HOM05D005662 ORTHO05D007004 6.5e-28 128.3 187 41.2
Zm00001eb010690 Zea mays HOM05D005662 ORTHO05D007004 3.3e-24 115.9 114 50.0
SEGI_33447 Sequoiadendron giganteum HOM05D005662 ORTHO05D007004 5.7e-24 115.2 160 40.6
SMO351G0592 Selaginella moellendorffii HOM05D005662 ORTHO05D007004 7.4e-24 114.8 174 36.8
Os10g0170000 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 9.7e-24 114.4 180 35.0
Os03g0249300 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 1.3e-23 114.0 164 36.6
CBR_g40194 Chara braunii HOM05D005662 ORTHO05D007004 3.1e-22 109.4 123 49.6
Cfa008223 Carpinus fangiana HOM05D000922 ORTHO05D007004 6.9e-22 108.2 132 44.7
Pp3c5_5760 Physcomitrium patens HOM05D005662 ORTHO05D007004 1.3e-20 104.0 98 50.0
AagrBONN_evm.TU.Sc2ySwM_368.1564 Anthoceros agrestis HOM05D005662 ORTHO05D007004 2.2e-20 103.2 99 52.5
Pp3c16_14910 Physcomitrium patens HOM05D005662 ORTHO05D007004 2.2e-20 103.2 191 31.9
Mapoly0005s0155 Marchantia polymorpha HOM05D005662 ORTHO05D007004 2.5e-19 99.8 115 44.3
Zm00001eb224250 Zea mays HOM05D005662 ORTHO05D007004 6.1e-18 95.1 191 31.9
Atru.chr1.654 Acer truncatum HOM05D005662 ORTHO05D007004 7.4e-16 88.2 111 45.0
COL.COLO4_29300 Corchorus olitorius HOM05D005662 ORTHO05D007004 3.4e-13 79.3 72 52.8
Solyc06g011630.1 Solanum lycopersicum HOM05D005662 ORTHO05D007004 3.8e-12 75.9 54 59.3
DCAR_018618 Daucus carota HOM05D005662 ORTHO05D007004 1.6e-10 70.5 109 39.4
MCO15G129 Micromonas commoda HOM05D005662 ORTHO05D007004 7.9e-10 68.2 101 39.6
PRCOL_00002770 Prasinoderma coloniale HOM05D005662 ORTHO05D007004 1.4e-09 67.4 142 31.0
arahy.Tifrunner.gnm1.ann1.6UH5I2 Arachis hypogaea HOM05D005662 ORTHO05D007004 8.8e-09 64.7 80 42.5
Thecc.03G160100 Theobroma cacao HOM05D005662 ORTHO05D007004 1.3e-07 60.8 139 33.1
Cre12.g538150 Chlamydomonas reinhardtii HOM05D005662 ORTHO05D007004 4.8e-07 58.9 83 31.3
CAN.G152.22 Capsicum annuum HOM05D005662 ORTHO05D007004 8.2e-07 58.2 45 62.2
AUR62035061 Chenopodium quinoa HOM05D005662 ORTHO05D007004 1.1e-06 57.8 43 67.4
Ah.13g067330 Amaranthus hybridus HOM05D005662 ORTHO05D007004 4.1e-06 55.8 45 62.2
BcaC03g18141 Brassica carinata HOM05D000207 ORTHO05D001482 5.3e-06 55.5 51 49.0


User provided reference genes

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