Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra15G0140200 Salix brachista HOM05D005186 ORTHO05D006278 3.7e-250 867.8 477 100.0
Potri.015G126800 Populus trichocarpa HOM05D005186 ORTHO05D006278 7.2e-177 624.4 406 89.2
Potri.012G126000 Populus trichocarpa HOM05D005186 ORTHO05D006278 8.3e-165 584.3 408 83.1
Sabra12G0094900 Salix brachista HOM05D005186 ORTHO05D006278 2.8e-152 542.7 425 76.9
TWI23G1038 Tripterygium wilfordii HOM05D005186 ORTHO05D006278 7.6e-118 428.3 412 63.1
TWI39G1272 Tripterygium wilfordii HOM05D005186 ORTHO05D006278 7.6e-118 428.3 415 62.9
Thecc.03G156500 Theobroma cacao HOM05D005186 ORTHO05D006278 6.0e-115 418.7 402 65.2
Atru.chr1.716 Acer truncatum HOM05D005186 ORTHO05D006278 1.6e-112 410.6 410 62.0
Duzib205G1009 Durio zibethinus HOM05D005186 ORTHO05D006278 1.4e-111 407.5 405 64.2
Manes.06G135200 Manihot esculenta HOM05D005186 ORTHO05D006278 1.4e-111 407.5 411 64.7
Dinv28566 Davidia involucrata HOM05D005186 ORTHO05D006278 1.2e-110 404.4 425 63.8
Manes.14G035500 Manihot esculenta HOM05D005186 ORTHO05D006278 7.6e-110 401.7 400 65.8
Cpa.g.sc3.315 Carica papaya HOM05D005186 ORTHO05D006278 2.4e-108 396.7 410 63.9
Prupe.2G277700 Prunus persica HOM05D005186 ORTHO05D006278 5.6e-105 385.6 414 61.6
CANSAT56G0052 Cannabis sativa HOM05D005186 ORTHO05D006278 6.2e-104 382.1 416 57.0
Haze_13870 Corylus avellana HOM05D005186 ORTHO05D006278 8.1e-104 381.7 412 61.7
Ciclev10005111m.g Citrus clementina HOM05D005186 ORTHO05D006278 4.0e-103 379.4 419 59.2
Gohir.A03G058600 Gossypium hirsutum HOM05D005186 ORTHO05D006278 2.9e-101 373.2 404 61.9
Gohir.D03G107500 Gossypium hirsutum HOM05D005186 ORTHO05D006278 8.4e-101 371.7 402 61.4
Gorai.003G113800 Gossypium raimondii HOM05D005186 ORTHO05D006278 4.2e-100 369.4 404 61.1
TAR374G0329 Trochodendron aralioides HOM05D005186 ORTHO05D006278 9.3e-100 368.2 426 57.7
COL.COLO4_14129 Corchorus olitorius HOM05D005186 ORTHO05D006278 1.2e-99 367.9 405 59.3
vmacro06793 Vaccinium macrocarpon HOM05D005186 ORTHO05D006278 6.0e-99 365.5 425 57.4
Actinidia13575 Actinidia chinensis HOM05D005186 ORTHO05D006278 1.4e-95 354.4 457 56.9
FAN10G1701 Fragaria x ananassa HOM05D005186 ORTHO05D006278 1.8e-95 354.0 411 58.6
FAN06G2498 Fragaria x ananassa HOM05D005186 ORTHO05D006278 5.3e-95 352.4 412 59.2
FAN01G3063 Fragaria x ananassa HOM05D005186 ORTHO05D006278 6.9e-95 352.1 411 58.9
FvH4_7g27600 Fragaria vesca HOM05D005186 ORTHO05D006278 2.6e-94 350.1 411 58.4
Lj3g0017931 Lotus japonicus HOM05D005186 ORTHO05D006278 7.6e-94 348.6 421 56.1
FAN03G1399 Fragaria x ananassa HOM05D005186 ORTHO05D006278 1.0e-93 348.2 412 59.0
Hma1.2p1_0432F.1_g151690 Hydrangea macrophylla HOM05D005186 ORTHO05D006278 2.2e-93 347.1 421 58.2
Migut.F00469 Erythranthe guttata HOM05D005186 ORTHO05D006278 2.9e-93 346.7 413 57.6
QL09p019611 Quercus lobata HOM05D005186 ORTHO05D006278 8.5e-93 345.1 430 55.6
Aqoxy7G00728 Aquilegia oxysepala HOM05D005186 ORTHO05D006278 3.2e-92 343.2 416 53.6
Eucgr.A02891 Eucalyptus grandis HOM05D005186 ORTHO05D006278 7.2e-92 342.0 433 54.3
RcHm_v2.0_Chr1g0374461 Rosa chinensis HOM05D005186 ORTHO05D006278 7.2e-92 342.0 418 56.5
FAN06G5126 Fragaria x ananassa HOM05D005186 ORTHO05D006278 1.2e-91 341.3 414 57.2
Nitab4.5_0001383g0010 Nicotiana tabacum HOM05D005186 ORTHO05D006278 1.2e-91 341.3 423 54.6
Nn6g34030 Nelumbo nucifera HOM05D005186 ORTHO05D006278 2.1e-91 340.5 434 54.8
SGA_v2.0_scaffold543G52822 Striga asiatica HOM05D005186 ORTHO05D006278 2.1e-91 340.5 419 53.5
PGR142G0385 Punica granatum HOM05D005186 ORTHO05D006278 6.1e-91 339.0 428 53.5
RhsimUnG0046700 Rhododendron simsii HOM05D005186 ORTHO05D006278 6.1e-91 339.0 430 58.6
CsaV3_7G006320 Cucumis sativus L. HOM05D005186 ORTHO05D006278 1.3e-90 337.8 417 52.8
PGR042G0730 Punica granatum HOM05D005186 ORTHO05D006278 1.8e-90 337.4 415 55.2
Nn1g01074 Nelumbo nucifera HOM05D005186 ORTHO05D006278 3.0e-90 336.7 431 54.1
Hma1.2p1_1640F.1_g295100 Hydrangea macrophylla HOM05D005186 ORTHO05D006278 1.9e-89 334.0 411 57.4
arahy.Tifrunner.gnm1.ann1.7NC073 Arachis hypogaea HOM05D005186 ORTHO05D006278 4.3e-89 332.8 431 54.1
VMungo1127G0816 Vigna mungo HOM05D005186 ORTHO05D006278 2.2e-88 330.5 441 54.2
Phvul.011G006100 Phaseolus vulgaris HOM05D005186 ORTHO05D006278 2.8e-88 330.1 438 54.1
ClCG09G015150 Citrullus lanatus HOM05D005186 ORTHO05D006278 1.1e-87 328.2 418 51.7
MELO3C018660.2 Cucumis melo HOM05D005186 ORTHO05D006278 1.1e-87 328.2 414 52.7
arahy.Tifrunner.gnm1.ann1.UNN1LQ Arachis hypogaea HOM05D005186 ORTHO05D006278 1.8e-87 327.4 443 52.6
Dinv22950 Davidia involucrata HOM05D005186 ORTHO05D006278 4.1e-87 326.2 377 59.9
Solyc03g083970.3 Solanum lycopersicum HOM05D005186 ORTHO05D006278 1.2e-86 324.7 416 53.6
Sopen03g023730 Solanum pennellii HOM05D005186 ORTHO05D006278 3.4e-86 323.2 416 53.6
Cc02_g04200 Coffea canephora HOM05D005186 ORTHO05D006278 4.5e-86 322.8 431 54.1
Sc13g0007880 Simmondsia chinensis HOM05D005186 ORTHO05D006278 1.0e-85 321.6 406 56.4
PGSC0003DMG400013858 Solanum tuberosum HOM05D005186 ORTHO05D006278 1.0e-85 321.6 422 53.8
CAN.G48.15 Capsicum annuum HOM05D005186 ORTHO05D006278 2.9e-85 320.1 421 53.2
Glyma.09G231200 Glycine max HOM05D005186 ORTHO05D006278 3.8e-85 319.7 424 54.0
Oeu022491.2 Olea europaea HOM05D005186 ORTHO05D006278 6.5e-85 318.9 457 51.6
SGA_v2.0_scaffold2G01194 Striga asiatica HOM05D005186 ORTHO05D006278 1.1e-84 318.2 426 54.2
CiPaw.04G060200 Carya illinoinensis HOM05D005186 ORTHO05D006278 7.2e-84 315.5 417 55.6
Hund11823 Selenicereus undatus HOM05D005186 ORTHO05D006278 1.2e-83 314.7 437 55.6
TPR.G3671 Trifolium pratense HOM05D005186 ORTHO05D006278 3.6e-83 313.2 427 52.5
Glyma.12G005300 Glycine max HOM05D005186 ORTHO05D006278 8.8e-82 308.5 431 52.9
Oeu042561.2 Olea europaea HOM05D005186 ORTHO05D006278 2.6e-81 307.0 456 51.8
Nitab4.5_0003875g0030 Nicotiana tabacum HOM05D005186 ORTHO05D006278 3.3e-81 306.6 421 52.5
Sed0005126 Sechium edule HOM05D005186 ORTHO05D006278 4.4e-81 306.2 414 49.5
MSTRG.128 Avicennia marina HOM05D005186 ORTHO05D006278 5.7e-81 305.8 426 51.6
HanXRQChr14g0461411 Helianthus annuus HOM05D005186 ORTHO05D006278 7.4e-81 305.4 423 52.5
Lalb_Chr19g0140361 Lupinus albus HOM05D005186 ORTHO05D006278 7.4e-81 305.4 327 59.0
Medtr4g036110 Medicago truncatula HOM05D005186 ORTHO05D006278 7.4e-81 305.4 413 54.2
SalBow2G2587 Salvia bowleyana HOM05D005186 ORTHO05D006278 8.2e-80 302.0 403 52.1
Sed0012571 Sechium edule HOM05D005186 ORTHO05D006278 1.4e-79 301.2 405 50.6
Lj8A42G21 Lonicera japonica HOM05D005186 ORTHO05D006278 3.1e-79 300.1 440 53.4
Lalb_Chr01g0000291 Lupinus albus HOM05D005186 ORTHO05D006278 4.1e-79 299.7 323 58.2
Ah.07g207900 Amaranthus hybridus HOM05D005186 ORTHO05D006278 2.6e-78 297.0 394 57.4
TAR375G0993 Trochodendron aralioides HOM05D005186 ORTHO05D006278 3.4e-78 296.6 353 58.1
DCAR_020192 Daucus carota HOM05D005186 ORTHO05D006278 7.7e-78 295.4 342 60.8
EL10Ac3g05838 Beta vulgaris HOM05D005186 ORTHO05D006278 1.0e-77 295.0 414 55.6
Peaxi162Scf00241g00318 Petunia axillaris HOM05D005186 ORTHO05D006278 6.5e-77 292.4 424 52.4
Lsat_1_v5_gn_2_129120 Lactuca sativa HOM05D005186 ORTHO05D006278 8.5e-77 292.0 417 51.3
ECA238G0955 Erigeron canadensis HOM05D005186 ORTHO05D006278 2.5e-76 290.4 420 51.2
Thhalv10004201m.g Eutrema salsugineum HOM05D005186 ORTHO05D006278 1.2e-75 288.1 459 46.4
C03p64500 Brassica napus HOM05D005186 ORTHO05D006278 4.7e-75 286.2 424 50.7
PSO170G0780 Papaver somniferum HOM05D005186 ORTHO05D006278 6.1e-75 285.8 432 48.6
AL8G39220 Arabidopsis lyrata HOM05D005186 ORTHO05D006278 7.9e-75 285.4 457 47.9
BcaC01g02463 Brassica carinata HOM05D005186 ORTHO05D006278 1.4e-74 284.6 424 50.5
GSVIVG01018630001 Vitis vinifera HOM05D005186 ORTHO05D006278 2.3e-74 283.9 264 66.3
AT5G62390 Arabidopsis thaliana HOM05D005186 ORTHO05D006278 3.0e-74 283.5 457 44.9
CiPaw.03G094100 Carya illinoinensis HOM05D005186 ORTHO05D006278 3.0e-74 283.5 340 59.1
MBI04_g37589_MAGBIO Magnolia biondii HOM05D005186 ORTHO05D006278 6.7e-74 282.3 426 48.6
unitig_1.g29355 Utricularia gibba HOM05D005186 ORTHO05D006278 1.5e-73 281.2 411 49.4
unitig_747.g22057 Utricularia gibba HOM05D005186 ORTHO05D006278 1.5e-73 281.2 411 49.4
Sp2g25560 Schrenkiella parvula HOM05D005186 ORTHO05D006278 2.6e-73 280.4 471 45.4
BolC3t18705H Brassica oleracea HOM05D005186 ORTHO05D006278 7.4e-73 278.9 450 46.4
Carub.0008s2307 Capsella rubella HOM05D005186 ORTHO05D006278 1.7e-72 277.7 470 45.1
PSO017G1100 Papaver somniferum HOM05D005186 ORTHO05D006278 1.4e-71 274.6 428 47.4
AUR62002195 Chenopodium quinoa HOM05D005186 ORTHO05D006278 2.4e-71 273.9 199 77.4
AUR62015515 Chenopodium quinoa HOM05D005186 ORTHO05D006278 9.1e-71 271.9 199 76.4
CARHR276170 Cardamine hirsuta HOM05D005186 ORTHO05D006278 2.9e-69 266.9 454 46.0
Psat7g207000 Pisum sativum HOM05D005186 ORTHO05D006278 1.1e-68 265.0 234 65.4
THA.LOC104821410 Tarenaya hassleriana HOM05D005186 ORTHO05D006278 1.9e-68 264.2 464 44.4
BolC1t01505H Brassica oleracea HOM05D005186 ORTHO05D006278 4.2e-68 263.1 460 43.3
Aa31LG11G1230 Aethionema arabicum HOM05D005186 ORTHO05D006278 7.2e-68 262.3 446 45.3
Ca_25005_v3 Cicer arietinum L. HOM05D005186 ORTHO05D006278 2.1e-67 260.8 172 78.5
C01p15530 Brassica napus HOM05D005186 ORTHO05D006278 2.3e-66 257.3 464 44.4
BraA01t01233Z Brassica rapa HOM05D005186 ORTHO05D006278 3.1e-63 246.9 474 44.3
BcaNung02779 Brassica carinata HOM05D005186 ORTHO05D006278 2.7e-62 243.8 172 73.8
CDE02G0091 Ceratophyllum demersum HOM05D005186 ORTHO05D006278 1.7e-61 241.1 415 44.6
Migut.F01178 Erythranthe guttata HOM05D005186 ORTHO05D006278 1.7e-61 241.1 180 73.9
A01p12890 Brassica napus HOM05D005186 ORTHO05D006278 2.9e-61 240.4 476 43.5
CSS0020740 Camellia sinensis var. sinensis HOM05D005186 ORTHO05D006278 5.0e-61 239.6 340 52.1
HPP92_022436 Vanilla planifolia HOM05D005186 ORTHO05D006278 1.1e-60 238.4 418 42.6
Hund04601 Selenicereus undatus HOM05D005186 ORTHO05D006278 4.2e-60 236.5 402 46.3
Thecc.01G380900 Theobroma cacao HOM05D005186 ORTHO05D006278 7.2e-52 209.1 341 46.3
BcaC01g02462 Brassica carinata HOM05D005186 ORTHO05D006278 4.0e-50 203.4 146 74.7
SHI13968 Sapria himalayana HOM05D005186 ORTHO05D006278 3.4e-49 200.3 427 37.2
ATR1153G063 Amborella trichopoda HOM05D005186 ORTHO05D006278 7.5e-49 199.1 392 44.9
CDE11G1075 Ceratophyllum demersum HOM05D005186 ORTHO05D006278 7.5e-49 199.1 414 43.2
COL.COLO4_12507 Corchorus olitorius HOM05D005186 ORTHO05D006278 2.8e-48 197.2 258 51.9
Zm00001eb379410 Zea mays HOM05D005186 ORTHO05D006278 4.1e-47 193.4 298 46.6
HanXRQChr05g0146091 Helianthus annuus HOM05D005186 ORTHO05D006278 1.1e-44 185.3 161 66.5
Os06g0104400 Oryza sativa ssp. japonica HOM05D005186 ORTHO05D006278 6.1e-43 179.5 190 53.7
Zm00001eb229450 Zea mays HOM05D005186 ORTHO05D006278 3.0e-42 177.2 217 50.7
Os02g0105500 Oryza sativa ssp. japonica HOM05D005186 ORTHO05D006278 1.3e-37 161.8 205 48.3
Atru.chr5.265 Acer truncatum HOM05D005186 ORTHO05D006278 4.0e-34 150.2 129 62.0
CAN.G1067.7 Capsicum annuum HOM05D005186 ORTHO05D006278 4.6e-22 110.2 187 45.5
COL.COLO4_07114 Corchorus olitorius HOM05D005186 ORTHO05D006278 7.8e-22 109.4 80 68.8
CAN.G319.13 Capsicum annuum HOM05D005186 ORTHO05D006278 1.7e-21 108.2 77 76.6
CSS0003747 Camellia sinensis var. sinensis HOM05D005186 ORTHO05D006278 9.5e-20 102.4 71 77.5
SEGI_24397 Sequoiadendron giganteum HOM05D005186 ORTHO05D006278 4.7e-19 100.1 214 35.5
GSVIVG01000691001 Vitis vinifera HOM05D005186 ORTHO05D006278 8.1e-19 99.4 88 61.4
GSVIVG01000692001 Vitis vinifera HOM05D005186 ORTHO05D006278 2.4e-18 97.8 88 61.4
ECA238G1972 Erigeron canadensis HOM05D005186 ORTHO05D006278 8.9e-18 95.9 63 76.2
FAN03G1572 Fragaria x ananassa HOM05D005186 ORTHO05D006278 3.9e-13 80.5 47 83.0
Nn3g18746 Nelumbo nucifera HOM05D005186 ORTHO05D006278 8.7e-13 79.3 66 59.1
A06p29100 Brassica napus HOM05D005186 ORTHO05D006278 1.6e-11 75.1 135 41.5
Sabra14G0043300 Salix brachista HOM05D005186 ORTHO05D006278 1.8e-10 71.6 66 59.1
RcHm_v2.0_Chr1g0335331 Rosa chinensis HOM05D005186 ORTHO05D006278 2.4e-10 71.2 62 62.9
Atru.chr1.1456 Acer truncatum HOM05D005186 ORTHO05D006278 9.0e-10 69.3 74 52.7
Mapoly0035s0113 Marchantia polymorpha HOM05D006269 ORTHO05D001487 1.5e-09 68.6 119 35.3
arahy.Tifrunner.gnm1.ann1.II6FYR Arachis hypogaea HOM05D006269 ORTHO05D001487 5.8e-09 66.6 168 30.4
Ca_25004_v3 Cicer arietinum L. HOM05D005186 ORTHO05D006278 5.8e-09 66.6 267 30.7
arahy.Tifrunner.gnm1.ann1.YSVF0U Arachis hypogaea HOM05D006269 ORTHO05D001487 3.8e-08 63.9 168 29.8
SEGI_35486 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 3.8e-08 63.9 181 27.1
Sc11g0004700 Simmondsia chinensis HOM05D005710 ORTHO05D004657 3.8e-08 63.9 138 33.3
ECA246G0940 Erigeron canadensis HOM05D005710 ORTHO05D004657 8.4e-08 62.8 177 31.6
Cpa.g.sc184.9 Carica papaya HOM05D006269 ORTHO05D001487 7.1e-07 59.7 166 30.1
SEGI_27071 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 7.1e-07 59.7 197 27.4
Lsat_1_v5_gn_6_68201 Lactuca sativa HOM05D005186 ORTHO05D006278 1.6e-06 58.5 34 85.3
Mapoly0045s0108 Marchantia polymorpha HOM05D006269 ORTHO05D001487 1.6e-06 58.5 101 33.7
SEGI_19830 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 1.6e-06 58.5 196 27.0
SEGI_30715 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 1.6e-06 58.5 163 28.2
Pp3c13_3400 Physcomitrium patens HOM05D006269 ORTHO05D001487 2.1e-06 58.2 123 29.3
SEGI_19331 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 3.5e-06 57.4 152 30.3
Hma1.2p1_0481F.1_g161930 Hydrangea macrophylla HOM05D005710 ORTHO05D004657 4.6e-06 57.0 99 40.4
Psat4g157480 Pisum sativum HOM05D006269 ORTHO05D001487 7.8e-06 56.2 113 31.9
Rhsim08G0074100 Rhododendron simsii HOM05D005710 ORTHO05D004657 7.8e-06 56.2 100 36.0
Hund13162 Selenicereus undatus HOM05D005710 ORTHO05D004657 7.8e-06 56.2 99 38.4
SEGI_38563 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 7.8e-06 56.2 151 28.5


User provided reference genes

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