Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra15G0119700 Salix brachista HOM05D003325 ORTHO05D003852 1.2e-61 239.6 117 100.0
Potri.015G098800 Populus trichocarpa HOM05D003325 ORTHO05D003852 7.7e-48 193.7 126 77.8
Potri.012G100600 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.8e-33 146.0 126 58.7
Sabra12G0073900 Salix brachista HOM05D003325 ORTHO05D003852 6.6e-31 137.5 118 57.6
QL10p002524 Quercus lobata HOM05D003325 ORTHO05D003852 9.8e-27 123.6 126 48.4
Thecc.03G131600 Theobroma cacao HOM05D003325 ORTHO05D003852 9.2e-25 117.1 126 47.6
Manes.06G120900 Manihot esculenta HOM05D003325 ORTHO05D003852 1.0e-23 113.6 126 45.2
Duzib084G0716 Durio zibethinus HOM05D003325 ORTHO05D003852 4.3e-22 108.2 126 45.2
Gohir.A03G053300 Gossypium hirsutum HOM05D003325 ORTHO05D003852 2.8e-21 105.5 127 43.3
Prupe.5G149100 Prunus persica HOM05D003325 ORTHO05D003852 2.8e-21 105.5 127 44.1
Gohir.D03G113600 Gossypium hirsutum HOM05D003325 ORTHO05D003852 8.0e-21 104.0 126 42.1
Gorai.003G119900 Gossypium raimondii HOM05D003325 ORTHO05D003852 8.0e-21 104.0 126 42.1
COL.COLO4_07119 Corchorus olitorius HOM05D003325 ORTHO05D003852 5.2e-20 101.3 126 42.1
Ciclev10033680m.g Citrus clementina HOM05D003325 ORTHO05D003852 1.5e-19 99.8 126 42.1
Cpa.g.sc13.92 Carica papaya HOM05D003325 ORTHO05D003852 1.3e-18 96.7 129 41.1
TAR622G0641 Trochodendron aralioides HOM05D003325 ORTHO05D003852 1.3e-18 96.7 144 41.7
GSVIVG01008557001 Vitis vinifera HOM05D003325 ORTHO05D003852 2.9e-18 95.5 133 39.8
Cpa.g.sc4.169 Carica papaya HOM05D003325 ORTHO05D003852 2.4e-17 92.4 126 39.7
Thecc.03G131500 Theobroma cacao HOM05D003325 ORTHO05D003852 2.4e-17 92.4 129 39.5
Sed0021268 Sechium edule HOM05D003325 ORTHO05D003852 3.2e-17 92.0 116 38.8
vmacro19124 Vaccinium macrocarpon HOM05D003325 ORTHO05D003852 5.4e-17 91.3 123 41.5
Gohir.D03G113900 Gossypium hirsutum HOM05D003325 ORTHO05D003852 9.2e-17 90.5 131 41.2
TWI39G0380 Tripterygium wilfordii HOM05D003325 ORTHO05D003852 9.2e-17 90.5 112 43.8
Atru.chr6.1822 Acer truncatum HOM05D003325 ORTHO05D003852 1.6e-16 89.7 129 39.5
Gorai.003G120100 Gossypium raimondii HOM05D003325 ORTHO05D003852 1.6e-16 89.7 130 41.5
Duzib068G1443 Durio zibethinus HOM05D003325 ORTHO05D003852 2.1e-16 89.4 122 40.2
Duzib205G1086 Durio zibethinus HOM05D003325 ORTHO05D003852 2.1e-16 89.4 136 40.4
MD14G1155200 Malus domestica HOM05D003325 ORTHO05D003852 2.1e-16 89.4 128 40.6
Gohir.A03G053200 Gossypium hirsutum HOM05D003325 ORTHO05D003852 2.7e-16 89.0 130 41.5
Manes.06G120800 Manihot esculenta HOM05D003325 ORTHO05D003852 2.7e-16 89.0 129 40.3
RcHm_v2.0_Chr7g0189831 Rosa chinensis HOM05D003325 ORTHO05D003852 2.7e-16 89.0 128 39.8
TWI14G0714 Tripterygium wilfordii HOM05D003325 ORTHO05D003852 2.7e-16 89.0 128 41.4
CSS0012678 Camellia sinensis var. sinensis HOM05D003325 ORTHO05D003852 6.0e-16 87.8 130 39.2
Actinidia25563 Actinidia chinensis HOM05D003325 ORTHO05D003852 7.8e-16 87.4 136 39.0
Sabra12G0073800 Salix brachista HOM05D003325 ORTHO05D003852 1.0e-15 87.0 121 41.3
Rhsim08G0191500 Rhododendron simsii HOM05D003325 ORTHO05D003852 1.3e-15 86.7 108 43.5
MD06G1139600 Malus domestica HOM05D003325 ORTHO05D003852 2.3e-15 85.9 129 39.5
Eucgr.B00095 Eucalyptus grandis HOM05D003325 ORTHO05D003852 3.0e-15 85.5 127 38.6
CANSAT80G0326 Cannabis sativa HOM05D003325 ORTHO05D003852 6.6e-15 84.3 127 40.2
Potri.015G098700 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.1e-14 83.6 115 43.5
QL10p002543 Quercus lobata HOM05D003325 ORTHO05D003852 1.5e-14 83.2 112 42.0
Ciclev10031319m.g Citrus clementina HOM05D003325 ORTHO05D003852 1.9e-14 82.8 129 38.8
HanXRQChr13g0407821 Helianthus annuus HOM05D003325 ORTHO05D003852 1.9e-14 82.8 119 38.7
Potri.004G005700 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.9e-14 82.8 132 37.9
MSTRG.11269 Avicennia marina HOM05D003325 ORTHO05D003852 2.5e-14 82.4 126 38.1
Potri.011G010100 Populus trichocarpa HOM05D003325 ORTHO05D003852 2.5e-14 82.4 131 37.4
FAN04G0895 Fragaria x ananassa HOM05D003325 ORTHO05D003852 3.3e-14 82.0 127 40.2
FAN13G2783 Fragaria x ananassa HOM05D003325 ORTHO05D003852 3.3e-14 82.0 127 40.2
Prupe.5G149200 Prunus persica HOM05D003325 ORTHO05D003852 3.3e-14 82.0 130 38.5
COL.COLO4_07120 Corchorus olitorius HOM05D003325 ORTHO05D003852 4.3e-14 81.6 129 38.0
Medtr3g099090 Medicago truncatula HOM05D003325 ORTHO05D003852 5.6e-14 81.3 128 38.3
QL10p002570 Quercus lobata HOM05D003325 ORTHO05D003852 5.6e-14 81.3 120 35.0
Cc01_g02380 Coffea canephora HOM05D003325 ORTHO05D003852 9.5e-14 80.5 128 37.5
FvH4_5g08560 Fragaria vesca HOM05D003325 ORTHO05D003852 1.2e-13 80.1 127 38.6
FAN18G4277 Fragaria x ananassa HOM05D003325 ORTHO05D003852 1.2e-13 80.1 127 38.6
SalBow5G0035 Salvia bowleyana HOM05D003325 ORTHO05D003852 1.2e-13 80.1 126 38.1
FvH4_5g08570 Fragaria vesca HOM05D003325 ORTHO05D003852 1.6e-13 79.7 125 35.2
Psat5g052120 Pisum sativum HOM05D003325 ORTHO05D003852 1.6e-13 79.7 127 37.0
Dinv23165 Davidia involucrata HOM05D003325 ORTHO05D003852 2.1e-13 79.3 128 35.9
Hund10145 Selenicereus undatus HOM05D003325 ORTHO05D003852 2.1e-13 79.3 131 37.4
Cfa018776 Carpinus fangiana HOM05D003325 ORTHO05D003852 2.8e-13 79.0 129 38.0
CiPaw.11G005500 Carya illinoinensis HOM05D003325 ORTHO05D003852 2.8e-13 79.0 128 40.6
Glyma.04G196900 Glycine max HOM05D003325 ORTHO05D003852 2.8e-13 79.0 128 35.9
HanXRQChr02g0034321 Helianthus annuus HOM05D003325 ORTHO05D003852 2.8e-13 79.0 119 41.2
Oeu061143.2 Olea europaea HOM05D003325 ORTHO05D003852 2.8e-13 79.0 120 35.0
Potri.012G100500 Populus trichocarpa HOM05D003325 ORTHO05D003852 2.8e-13 79.0 122 41.0
Sc10g0010530 Simmondsia chinensis HOM05D003325 ORTHO05D003852 2.8e-13 79.0 131 38.2
Nitab4.5_0007721g0020 Nicotiana tabacum HOM05D003325 ORTHO05D003852 4.7e-13 78.2 127 34.6
THA.LOC104798940 Tarenaya hassleriana HOM05D003325 ORTHO05D003852 4.7e-13 78.2 119 35.3
CANSAT80G2651 Cannabis sativa HOM05D003325 ORTHO05D003852 8.1e-13 77.4 130 38.5
Glyma.06G168700 Glycine max HOM05D003325 ORTHO05D003852 8.1e-13 77.4 128 35.2
Oeu061142.1 Olea europaea HOM05D003325 ORTHO05D003852 1.8e-12 76.3 122 32.8
Ca_16056_v3 Cicer arietinum L. HOM05D003325 ORTHO05D003852 2.3e-12 75.9 127 36.2
FAN04G2439 Fragaria x ananassa HOM05D003325 ORTHO05D003852 2.3e-12 75.9 132 31.1
HanXRQChr13g0407901 Helianthus annuus HOM05D003325 ORTHO05D003852 2.3e-12 75.9 129 35.7
THA.LOC104798939 Tarenaya hassleriana HOM05D003325 ORTHO05D003852 4.0e-12 75.1 125 31.2
HanXRQChr02g0034301 Helianthus annuus HOM05D003325 ORTHO05D003852 8.9e-12 73.9 118 38.1
DCAR_016380 Daucus carota HOM05D003325 ORTHO05D003852 1.2e-11 73.6 123 35.0
CAN.G676.19 Capsicum annuum HOM05D003325 ORTHO05D003852 1.5e-11 73.2 127 33.9
Eucgr.F00440 Eucalyptus grandis HOM05D003325 ORTHO05D003852 2.0e-11 72.8 128 34.4
Migut.I00547 Erythranthe guttata HOM05D003325 ORTHO05D003852 2.6e-11 72.4 127 36.2
PGR083G0510 Punica granatum HOM05D003325 ORTHO05D003852 2.6e-11 72.4 132 31.1
TAR622G0196 Trochodendron aralioides HOM05D003325 ORTHO05D003852 2.6e-11 72.4 130 39.2
Haze_07162 Corylus avellana HOM05D003325 ORTHO05D003852 3.4e-11 72.0 129 36.4
Lj1g0000526 Lotus japonicus HOM05D003325 ORTHO05D003852 4.4e-11 71.6 128 35.9
PGSC0003DMG400023730 Solanum tuberosum HOM05D003325 ORTHO05D003852 4.4e-11 71.6 126 34.1
Sc10g0010520 Simmondsia chinensis HOM05D003325 ORTHO05D003852 9.9e-11 70.5 116 36.2
Sopen04g008210 Solanum pennellii HOM05D003325 ORTHO05D003852 9.9e-11 70.5 100 38.0
Solyc10g080020.3 Solanum lycopersicum HOM05D003325 ORTHO05D003852 1.3e-10 70.1 126 33.3
Sopen04g008200 Solanum pennellii HOM05D003325 ORTHO05D003852 1.3e-10 70.1 127 33.1
Sopen10g030630 Solanum pennellii HOM05D003325 ORTHO05D003852 1.3e-10 70.1 126 33.3
arahy.Tifrunner.gnm1.ann1.C4UAPE Arachis hypogaea HOM05D003325 ORTHO05D003852 1.7e-10 69.7 123 34.1
ECA247G1358 Erigeron canadensis HOM05D003325 ORTHO05D003852 1.7e-10 69.7 129 34.9
Potri.011G010200 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.7e-10 69.7 117 33.3
Migut.N02143 Erythranthe guttata HOM05D003325 ORTHO05D003852 2.2e-10 69.3 113 38.1
Thhalv10004000m.g Eutrema salsugineum HOM05D003325 ORTHO05D003852 2.2e-10 69.3 132 33.3
Lalb_Chr08g0237261 Lupinus albus HOM05D003325 ORTHO05D003852 2.2e-10 69.3 127 33.9
MBI11_g22691_MAGBIO Magnolia biondii HOM05D003325 ORTHO05D003852 2.2e-10 69.3 157 30.6
Solyc04g016160.4 Solanum lycopersicum HOM05D003325 ORTHO05D003852 2.2e-10 69.3 100 38.0
PGSC0003DMG400038085 Solanum tuberosum HOM05D003325 ORTHO05D003852 3.7e-10 68.6 104 36.5
CARHR277380 Cardamine hirsuta HOM05D003325 ORTHO05D003852 4.9e-10 68.2 117 34.2
Nn4g22275 Nelumbo nucifera HOM05D003325 ORTHO05D003852 4.9e-10 68.2 57 59.6
Phvul.009G165200 Phaseolus vulgaris HOM05D003325 ORTHO05D003852 4.9e-10 68.2 129 34.9
Hma1.2p1_0014F.1_g009260 Hydrangea macrophylla HOM05D003325 ORTHO05D003852 6.4e-10 67.8 136 38.2
Nitab4.5_0012330g0020 Nicotiana tabacum HOM05D003325 ORTHO05D003852 6.4e-10 67.8 104 36.5
Solyc04g016130.3 Solanum lycopersicum HOM05D003325 ORTHO05D003852 6.4e-10 67.8 127 31.5
SGA_v2.0_scaffold383G50423 Striga asiatica HOM05D003325 ORTHO05D003852 6.4e-10 67.8 126 31.0
Aa31LG1G18420 Aethionema arabicum HOM05D003325 ORTHO05D003852 1.4e-09 66.6 126 32.5
Migut.N02169 Erythranthe guttata HOM05D003325 ORTHO05D003852 1.4e-09 66.6 143 32.9
HanXRQChr00c0029g0571191 Helianthus annuus HOM05D003325 ORTHO05D003852 1.4e-09 66.6 107 34.6
HanXRQChr13g0407851 Helianthus annuus HOM05D003325 ORTHO05D003852 1.4e-09 66.6 120 38.3
A02p42850 Brassica napus HOM05D003325 ORTHO05D003852 4.1e-09 65.1 117 30.8
BolC2t12350H Brassica oleracea HOM05D003325 ORTHO05D003852 4.1e-09 65.1 117 30.8
HanXRQChr13g0407891 Helianthus annuus HOM05D003325 ORTHO05D003852 4.1e-09 65.1 106 40.6
Lsat_1_v5_gn_1_33020 Lactuca sativa HOM05D003325 ORTHO05D003852 4.1e-09 65.1 127 34.6
FAN18G2108 Fragaria x ananassa HOM05D003325 ORTHO05D003852 5.4e-09 64.7 155 28.4
MD14G1155100 Malus domestica HOM05D003325 ORTHO05D003852 5.4e-09 64.7 56 46.4
BcaC01g06930 Brassica carinata HOM05D003325 ORTHO05D003852 7.1e-09 64.3 111 31.5
A06p30150 Brassica napus HOM05D003325 ORTHO05D003852 7.1e-09 64.3 111 31.5
C03p62920 Brassica napus HOM05D003325 ORTHO05D003852 7.1e-09 64.3 111 31.5
BolC3t18546H Brassica oleracea HOM05D003325 ORTHO05D003852 7.1e-09 64.3 111 31.5
BraA06t25966Z Brassica rapa HOM05D003325 ORTHO05D003852 7.1e-09 64.3 111 31.5
HanXRQChr10g0317761 Helianthus annuus HOM05D003325 ORTHO05D003852 9.2e-09 63.9 106 38.7
HanXRQChr13g0408781 Helianthus annuus HOM05D003325 ORTHO05D003852 9.2e-09 63.9 113 36.3
Sp2g26610 Schrenkiella parvula HOM05D003325 ORTHO05D003852 1.2e-08 63.5 123 29.3
BcaB02g09754 Brassica carinata HOM05D003325 ORTHO05D003852 1.6e-08 63.2 111 30.6
Lj1g0016208 Lotus japonicus HOM05D003325 ORTHO05D003852 1.6e-08 63.2 122 32.0
BcaC03g18211 Brassica carinata HOM05D003325 ORTHO05D003852 2.1e-08 62.8 117 29.9
AUR62038854 Chenopodium quinoa HOM05D003325 ORTHO05D003852 2.1e-08 62.8 130 30.0
HanXRQChr02g0034341 Helianthus annuus HOM05D003325 ORTHO05D003852 2.7e-08 62.4 100 36.0
AUR62029583 Chenopodium quinoa HOM05D003325 ORTHO05D003852 3.5e-08 62.0 130 30.0
Carub.0008s2425 Capsella rubella HOM05D003325 ORTHO05D003852 4.6e-08 61.6 118 32.2
Thhalv10004048m.g Eutrema salsugineum HOM05D003325 ORTHO05D003852 4.6e-08 61.6 118 30.5
Eucgr.L01506 Eucalyptus grandis HOM05D003325 ORTHO05D003852 6.0e-08 61.2 63 42.9
BraA02t09207Z Brassica rapa HOM05D003325 ORTHO05D003852 7.8e-08 60.8 118 30.5
HanXRQChr13g0408791 Helianthus annuus HOM05D003325 ORTHO05D003852 7.8e-08 60.8 105 34.3
Aqoxy5G03311 Aquilegia oxysepala HOM05D003325 ORTHO05D003852 1.0e-07 60.5 75 42.7
BcaB07g29692 Brassica carinata HOM05D003325 ORTHO05D003852 1.0e-07 60.5 118 28.0
DCAR_021631 Daucus carota HOM05D003325 ORTHO05D003852 1.0e-07 60.5 125 30.4
DCAR_021629 Daucus carota HOM05D003325 ORTHO05D003852 1.7e-07 59.7 125 30.4
HanXRQChr13g0408811 Helianthus annuus HOM05D003325 ORTHO05D003852 1.7e-07 59.7 110 34.5
Peaxi162Scf00130g00520 Petunia axillaris HOM05D003325 ORTHO05D003852 2.3e-07 59.3 54 50.0
C02p62780 Brassica napus HOM05D003325 ORTHO05D003852 3.0e-07 58.9 118 29.7
MD07G1107900 Malus domestica HOM05D003543 ORTHO05D004112 3.9e-07 58.5 59 49.2
Nitab4.5_0000636g0090 Nicotiana tabacum HOM05D003325 ORTHO05D003852 3.9e-07 58.5 54 46.3
DCAR_021633 Daucus carota HOM05D003325 ORTHO05D003852 1.1e-06 57.0 116 30.2
HanXRQChr04g0099631 Helianthus annuus HOM05D003325 ORTHO05D003852 1.1e-06 57.0 120 34.2
HanXRQChr13g0408771 Helianthus annuus HOM05D003325 ORTHO05D003852 1.9e-06 56.2 103 33.0
PGSC0003DMG400027287 Solanum tuberosum HOM05D003325 ORTHO05D003852 2.5e-06 55.8 41 58.5
TPR.G496 Trifolium pratense HOM05D003325 ORTHO05D003852 3.3e-06 55.5 57 47.4
arahy.Tifrunner.gnm1.ann1.XMC2I2 Arachis hypogaea HOM05D003325 ORTHO05D003852 5.6e-06 54.7 100 33.0
AL8G40600 Arabidopsis lyrata HOM05D003325 ORTHO05D003852 9.5e-06 53.9 124 29.0


User provided reference genes

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