Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra15G0116400 Salix brachista HOM05D005744 ORTHO05D007503 1.0e-246 856.3 429 100.0
Potri.015G095400 Populus trichocarpa HOM05D005744 ORTHO05D007503 2.9e-233 811.6 429 92.3
Manes.14G051500 Manihot esculenta HOM05D005744 ORTHO05D007503 3.9e-206 721.5 424 83.3
Thecc.03G128600 Theobroma cacao HOM05D005744 ORTHO05D007503 5.8e-194 681.0 426 76.8
COL.COLO4_28103 Corchorus olitorius HOM05D005744 ORTHO05D007503 1.0e-193 680.2 426 78.9
GSVIVG01008538001 Vitis vinifera HOM05D005744 ORTHO05D007503 1.7e-193 679.5 426 76.1
Ciclev10020324m.g Citrus clementina HOM05D005744 ORTHO05D007503 2.3e-190 669.1 429 75.8
Gorai.008G206000 Gossypium raimondii HOM05D005744 ORTHO05D007503 1.6e-188 662.9 429 77.2
Gohir.D12G191700 Gossypium hirsutum HOM05D005744 ORTHO05D007503 8.2e-188 660.6 429 76.9
Gohir.A12G189400 Gossypium hirsutum HOM05D005744 ORTHO05D007503 1.1e-187 660.2 429 76.7
Atru.chr9.1122 Acer truncatum HOM05D005744 ORTHO05D007503 1.8e-187 659.4 426 77.0
CiPaw.11G008100 Carya illinoinensis HOM05D005744 ORTHO05D007503 7.9e-183 644.0 426 74.9
CSS0041302 Camellia sinensis var. sinensis HOM05D005744 ORTHO05D007503 5.1e-182 641.3 430 75.1
QL10p003203 Quercus lobata HOM05D005744 ORTHO05D007503 5.1e-182 641.3 424 76.9
Cfa018827 Carpinus fangiana HOM05D005744 ORTHO05D007503 4.3e-181 638.3 427 77.5
Nn3g16475 Nelumbo nucifera HOM05D005744 ORTHO05D007503 1.2e-178 630.2 427 71.0
THA.LOC104825016 Tarenaya hassleriana HOM05D005744 ORTHO05D007503 3.4e-178 628.6 429 71.1
Sed0005313 Sechium edule HOM05D005744 ORTHO05D007503 2.2e-177 625.9 429 71.1
Prupe.5G151700 Prunus persica HOM05D005744 ORTHO05D007503 6.5e-177 624.4 426 75.1
arahy.Tifrunner.gnm1.ann1.DQ5P63 Arachis hypogaea HOM05D005744 ORTHO05D007503 7.2e-176 620.9 425 72.0
Oeu010732.1 Olea europaea HOM05D005744 ORTHO05D007503 7.2e-176 620.9 425 71.5
ClCG06G017860 Citrullus lanatus HOM05D005744 ORTHO05D007503 2.7e-175 619.0 420 71.9
MSTRG.13706 Avicennia marina HOM05D005744 ORTHO05D007503 6.1e-175 617.8 426 70.0
CANSAT80G0573 Cannabis sativa HOM05D005744 ORTHO05D007503 1.0e-174 617.1 426 71.8
arahy.Tifrunner.gnm1.ann1.SJIN4P Arachis hypogaea HOM05D005744 ORTHO05D007503 1.4e-174 616.7 429 71.6
MD14G1157700 Malus domestica HOM05D005744 ORTHO05D007503 5.1e-174 614.8 428 72.7
MELO3C026209.2 Cucumis melo HOM05D005744 ORTHO05D007503 8.8e-174 614.0 420 71.0
PGR044G2189 Punica granatum HOM05D005744 ORTHO05D007503 4.4e-173 611.7 392 76.8
CsaV3_1G000590 Cucumis sativus L. HOM05D005744 ORTHO05D007503 5.7e-173 611.3 420 71.0
Lj1g0015277 Lotus japonicus HOM05D005744 ORTHO05D007503 1.7e-172 609.8 423 70.9
Lalb_Chr08g0237111 Lupinus albus HOM05D005744 ORTHO05D007503 2.8e-172 609.0 432 69.2
Psat5g140680 Pisum sativum HOM05D005744 ORTHO05D007503 3.7e-172 608.6 424 70.8
Duzib205G1133 Durio zibethinus HOM05D005744 ORTHO05D007503 3.1e-171 605.5 424 71.7
Migut.E00304 Erythranthe guttata HOM05D005744 ORTHO05D007503 7.0e-171 604.4 426 70.2
Cc08_g16880 Coffea canephora HOM05D005744 ORTHO05D007503 9.1e-171 604.0 426 71.6
DCAR_021616 Daucus carota HOM05D005744 ORTHO05D007503 2.0e-170 602.8 432 69.0
HanXRQChr16g0498211 Helianthus annuus HOM05D005744 ORTHO05D007503 2.0e-170 602.8 430 68.1
VMungo1309G1043 Vigna mungo HOM05D005744 ORTHO05D007503 1.3e-169 600.1 425 72.9
Medtr3g074980 Medicago truncatula HOM05D005744 ORTHO05D007503 2.2e-169 599.4 424 69.8
Eucgr.K02730 Eucalyptus grandis HOM05D005744 ORTHO05D007503 5.0e-169 598.2 446 70.2
Ca_24503_v3 Cicer arietinum L. HOM05D005744 ORTHO05D007503 8.5e-169 597.4 424 72.4
CARHR232280 Cardamine hirsuta HOM05D005744 ORTHO05D007503 1.1e-168 597.0 423 68.1
BraA03t14628Z Brassica rapa HOM05D005744 ORTHO05D007503 1.4e-168 596.7 431 67.5
Rhsim08G0189700 Rhododendron simsii HOM05D005744 ORTHO05D007503 1.4e-168 596.7 424 71.5
RhsimUnG0231400 Rhododendron simsii HOM05D005744 ORTHO05D007503 1.4e-168 596.7 424 71.9
C07p53850 Brassica napus HOM05D005744 ORTHO05D007503 5.5e-168 594.7 431 67.5
Haze_07221 Corylus avellana HOM05D005744 ORTHO05D007503 7.2e-168 594.3 484 67.4
BcaC06g32852 Brassica carinata HOM05D005744 ORTHO05D007503 1.2e-167 593.6 431 67.3
A03p55610 Brassica napus HOM05D005744 ORTHO05D007503 1.6e-167 593.2 431 67.5
AL7G28320 Arabidopsis lyrata HOM05D005744 ORTHO05D007503 2.1e-167 592.8 423 67.1
Phvul.009G166600 Phaseolus vulgaris HOM05D005744 ORTHO05D007503 2.7e-167 592.4 429 71.8
Lsat_1_v5_gn_4_80081 Lactuca sativa HOM05D005744 ORTHO05D007503 6.1e-167 591.3 427 66.3
BolC7t45875H Brassica oleracea HOM05D005744 ORTHO05D007503 1.0e-166 590.5 431 67.1
Glyma.06G170500 Glycine max HOM05D005744 ORTHO05D007503 6.7e-166 587.8 423 68.8
Sp7g22860 Schrenkiella parvula HOM05D005744 ORTHO05D007503 2.0e-165 586.3 430 65.8
TPR.G26152 Trifolium pratense HOM05D005744 ORTHO05D007503 2.0e-165 586.3 424 68.6
Carub.0007s1619 Capsella rubella HOM05D005744 ORTHO05D007503 9.7e-165 583.9 423 66.4
Aqoxy3G01542 Aquilegia oxysepala HOM05D005744 ORTHO05D007503 2.8e-164 582.4 426 65.3
ECA232G3603 Erigeron canadensis HOM05D005744 ORTHO05D007503 4.8e-164 581.6 424 67.5
EL10As4g23384 Beta vulgaris HOM05D005744 ORTHO05D007503 6.3e-164 581.3 425 66.8
Actinidia25578 Actinidia chinensis HOM05D005744 ORTHO05D007503 8.2e-164 580.9 387 76.5
Thhalv10025348m.g Eutrema salsugineum HOM05D005744 ORTHO05D007503 2.4e-163 579.3 408 67.6
PSO782G2798 Papaver somniferum HOM05D005744 ORTHO05D007503 7.0e-163 577.8 422 65.9
SalBow5G0293 Salvia bowleyana HOM05D005744 ORTHO05D007503 3.5e-162 575.5 440 68.6
PSO801G0019 Papaver somniferum HOM05D005744 ORTHO05D007503 4.5e-162 575.1 422 69.0
Ah.02g114920 Amaranthus hybridus HOM05D005744 ORTHO05D007503 7.7e-162 574.3 452 65.9
Dinv11169 Davidia involucrata HOM05D005744 ORTHO05D007503 1.3e-161 573.5 426 68.8
TPR.G12158 Trifolium pratense HOM05D005744 ORTHO05D007503 5.0e-161 571.6 424 67.7
Peaxi162Scf00074g00136 Petunia axillaris HOM05D005744 ORTHO05D007503 1.5e-160 570.1 426 67.4
Actinidia33099 Actinidia chinensis HOM05D005744 ORTHO05D007503 2.5e-160 569.3 340 79.4
PSO339G3552 Papaver somniferum HOM05D005744 ORTHO05D007503 2.5e-160 569.3 423 68.6
RcHm_v2.0_Chr7g0190291 Rosa chinensis HOM05D005744 ORTHO05D007503 9.4e-160 567.4 426 66.4
Nitab4.5_0002720g0090 Nicotiana tabacum HOM05D005744 ORTHO05D007503 2.1e-159 566.2 453 64.0
Solyc08g083260.3 Solanum lycopersicum HOM05D005744 ORTHO05D007503 2.1e-159 566.2 425 66.4
MBI07_g31012_MAGBIO Magnolia biondii HOM05D005744 ORTHO05D007503 2.7e-159 565.8 428 68.9
vmacro19203 Vaccinium macrocarpon HOM05D005744 ORTHO05D007503 6.1e-159 564.7 479 61.0
Sopen08g031450 Solanum pennellii HOM05D005744 ORTHO05D007503 8.0e-159 564.3 425 66.1
PGSC0003DMG400012114 Solanum tuberosum HOM05D005744 ORTHO05D007503 8.0e-159 564.3 424 65.8
FAN18G3767 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.2e-157 560.5 424 67.2
HPP92_020223 Vanilla planifolia HOM05D005744 ORTHO05D007503 5.7e-157 558.1 425 64.0
FvH4_5g08230 Fragaria vesca HOM05D005744 ORTHO05D007503 2.2e-156 556.2 424 67.0
AUR62025939 Chenopodium quinoa HOM05D005744 ORTHO05D007503 3.7e-156 555.4 392 70.7
FAN08G2910 Fragaria x ananassa HOM05D005744 ORTHO05D007503 4.8e-156 555.1 424 66.7
AUR62029618 Chenopodium quinoa HOM05D005744 ORTHO05D007503 8.2e-156 554.3 390 68.5
CDE05G2332 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 2.0e-154 549.7 426 62.9
Lj9A478G92 Lonicera japonica HOM05D005744 ORTHO05D007503 1.7e-153 546.6 392 68.9
FAN13G0489 Fragaria x ananassa HOM05D005744 ORTHO05D007503 8.5e-153 544.3 464 61.4
Os01g0101300 Oryza sativa ssp. japonica HOM05D005744 ORTHO05D007503 3.4e-149 532.3 426 62.0
ATR0561G060 Amborella trichopoda HOM05D005744 ORTHO05D007503 9.8e-149 530.8 422 63.0
TAR629G2476 Trochodendron aralioides HOM05D005744 ORTHO05D007503 3.8e-145 518.8 333 74.5
CAN.G567.98 Capsicum annuum HOM05D005744 ORTHO05D007503 1.0e-142 510.8 444 61.3
Glyma.04G195500 Glycine max HOM05D005744 ORTHO05D007503 3.0e-142 509.2 316 74.7
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 4.4e-141 505.4 432 61.3
SGA_v2.0_scaffold22G09828 Striga asiatica HOM05D005744 ORTHO05D007503 1.3e-137 493.8 416 60.8
Cpa.g.sc2981.2 Carica papaya HOM05D005744 ORTHO05D007503 3.9e-137 492.3 311 76.8
Aa31LG7G10960 Aethionema arabicum HOM05D005744 ORTHO05D007503 7.3e-136 488.0 299 76.3
TAR633G0019 Trochodendron aralioides HOM05D005744 ORTHO05D007503 7.3e-136 488.0 304 74.0
AT4G24880 Arabidopsis thaliana HOM05D005744 ORTHO05D007503 9.5e-136 487.6 339 68.4
Sc04g0000680 Simmondsia chinensis HOM05D005744 ORTHO05D007503 3.6e-135 485.7 299 73.6
Zm00001eb354570 Zea mays HOM05D005744 ORTHO05D007503 8.0e-135 484.6 426 59.6
PSO478G2520 Papaver somniferum HOM05D005744 ORTHO05D007503 3.0e-129 466.1 344 65.1
FvH4_4g11820 Fragaria vesca HOM05D005744 ORTHO05D007503 6.6e-129 464.9 429 57.3
FAN07G2643 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.2e-127 460.7 327 68.5
SalBow5G5674 Salvia bowleyana HOM05D005744 ORTHO05D007503 2.6e-125 453.0 440 58.2
Mapoly0024s0037 Marchantia polymorpha HOM05D005744 ORTHO05D007503 8.3e-124 448.0 424 53.8
unitig_27.g25288 Utricularia gibba HOM05D005744 ORTHO05D007503 1.9e-123 446.8 423 54.6
Pp3c8_11540 Physcomitrium patens HOM05D005744 ORTHO05D007503 1.9e-120 436.8 428 51.9
SMO364G0648 Selaginella moellendorffii HOM05D005744 ORTHO05D007503 1.0e-113 414.5 415 51.3
FAN12G3536 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.3e-105 387.5 327 60.2
SEGI_05259 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 9.9e-101 371.3 321 54.8
Nitab4.5_0000479g0030 Nicotiana tabacum HOM05D005744 ORTHO05D007503 4.2e-99 365.9 274 67.5
FAN12G3591 Fragaria x ananassa HOM05D005744 ORTHO05D007503 3.9e-97 359.4 302 59.6
Eucgr.L02977 Eucalyptus grandis HOM05D005744 ORTHO05D007503 1.6e-87 327.4 283 66.8
SEGI_21905 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 4.0e-78 296.2 183 68.9
SHI06365 Sapria himalayana HOM05D005744 ORTHO05D007503 7.1e-75 285.4 373 45.3
MCO07G390 Micromonas commoda HOM05D005744 ORTHO05D007503 2.0e-69 267.3 456 36.4
AagrBONN_evm.TU.Sc2ySwM_344.2997 Anthoceros agrestis HOM05D005744 ORTHO05D007503 6.1e-66 255.8 218 53.2
PRCOL_00001155 Prasinoderma coloniale HOM05D005744 ORTHO05D007503 3.8e-60 236.5 453 36.4
Cre16.g666000 Chlamydomonas reinhardtii HOM05D005744 ORTHO05D007503 2.1e-58 230.7 559 31.3
COL.COLO4_31215 Corchorus olitorius HOM05D005744 ORTHO05D007503 2.5e-51 207.2 129 79.8
RcHm_v2.0_Chr4g0407951 Rosa chinensis HOM05D005744 ORTHO05D007503 8.8e-49 198.7 268 45.9
GSVIVG01008540001 Vitis vinifera HOM05D005744 ORTHO05D007503 4.8e-47 193.0 119 76.5
HanXRQChr10g0289761 Helianthus annuus HOM05D005744 ORTHO05D007503 7.0e-46 189.1 195 50.8
Lsat_1_v5_gn_8_77640 Lactuca sativa HOM05D005744 ORTHO05D007503 3.5e-45 186.8 115 74.8
QL10p003231 Quercus lobata HOM05D005744 ORTHO05D007503 4.1e-38 163.3 116 68.1
Aa31LG7G10970 Aethionema arabicum HOM05D005744 ORTHO05D007503 6.1e-26 122.9 131 55.0
CDE12G0192 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 1.7e-23 114.8 146 46.6
RcHm_v2.0_Chr4g0407901 Rosa chinensis HOM05D005744 ORTHO05D007503 2.9e-23 114.0 256 34.8
Lsat_1_v5_gn_8_150141 Lactuca sativa HOM05D005744 ORTHO05D048266 2.3e-20 104.4 107 47.7
TAR629G1577 Trochodendron aralioides HOM05D005744 ORTHO05D007503 2.4e-14 84.3 60 60.0
SEGI_17145 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 5.2e-09 66.6 75 52.0
HanXRQChr10g0289791 Helianthus annuus HOM05D005744 ORTHO05D048266 2.2e-07 61.2 39 66.7
CDE05G3540 Ceratophyllum demersum HOM05D005744 ORTHO05D130478 8.3e-07 59.3 110 36.4


User provided reference genes

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