Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra15G0115500 Salix brachista HOM05D004543 ORTHO05D006042 0.0e+00 1493.8 758 100.0
Potri.015G094000 Populus trichocarpa HOM05D004543 ORTHO05D006042 0.0e+00 1411.0 756 94.7
Potri.012G096100 Populus trichocarpa HOM05D004543 ORTHO05D006042 0.0e+00 1342.8 756 90.3
Manes.06G118300 Manihot esculenta HOM05D004543 ORTHO05D006042 0.0e+00 1204.1 758 80.7
Haze_07231 Corylus avellana HOM05D004543 ORTHO05D006042 0.0e+00 1156.4 749 77.8
Cfa018837 Carpinus fangiana HOM05D004543 ORTHO05D006042 0.0e+00 1156.0 749 78.1
CiPaw.11G008900 Carya illinoinensis HOM05D004543 ORTHO05D006042 0.0e+00 1143.3 757 77.3
QL10p004063 Quercus lobata HOM05D004543 ORTHO05D006042 0.0e+00 1128.2 774 74.2
COL.COLO4_26675 Corchorus olitorius HOM05D004543 ORTHO05D006042 0.0e+00 1125.2 750 76.1
MD06G1143400 Malus domestica HOM05D004543 ORTHO05D006042 0.0e+00 1124.8 759 75.5
Ciclev10018979m.g Citrus clementina HOM05D004543 ORTHO05D006042 0.0e+00 1119.8 760 74.9
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 0.0e+00 1119.4 743 75.9
RcHm_v2.0_Chr7g0190411 Rosa chinensis HOM05D004543 ORTHO05D006042 0.0e+00 1117.4 755 74.4
TWI23G0493 Tripterygium wilfordii HOM05D004543 ORTHO05D006042 0.0e+00 1117.1 756 74.9
Atru.chr9.1076 Acer truncatum HOM05D004543 ORTHO05D006042 0.0e+00 1116.3 754 74.9
Thecc.06G039500 Theobroma cacao HOM05D004543 ORTHO05D006042 0.0e+00 1114.4 750 75.9
MD14G1158600 Malus domestica HOM05D004543 ORTHO05D006042 0.0e+00 1114.0 757 74.8
Duzib138G1537 Durio zibethinus HOM05D004543 ORTHO05D006042 0.0e+00 1111.3 752 75.7
Ca_00911_v3 Cicer arietinum L. HOM05D004543 ORTHO05D006042 0.0e+00 1109.7 752 74.7
Lalb_Chr07g0183361 Lupinus albus HOM05D004543 ORTHO05D006042 0.0e+00 1108.2 757 74.6
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 0.0e+00 1107.8 771 73.7
FvH4_5g08050 Fragaria vesca HOM05D004543 ORTHO05D006042 0.0e+00 1107.4 771 73.7
FAN04G2916 Fragaria x ananassa HOM05D004543 ORTHO05D006042 0.0e+00 1105.9 760 74.2
VMungo1215G3183 Vigna mungo HOM05D004543 ORTHO05D006042 0.0e+00 1102.0 757 73.4
Phvul.003G210200 Phaseolus vulgaris HOM05D004543 ORTHO05D006042 0.0e+00 1097.8 752 73.4
Prupe.5G152600 Prunus persica HOM05D004543 ORTHO05D006042 0.0e+00 1089.3 754 73.9
Glyma.17G129100 Glycine max HOM05D004543 ORTHO05D006042 0.0e+00 1088.2 752 73.4
Gohir.D11G175000 Gossypium hirsutum HOM05D004543 ORTHO05D006042 0.0e+00 1087.4 751 73.6
Dinv11159 Davidia involucrata HOM05D004543 ORTHO05D006042 0.0e+00 1086.6 757 73.3
GSVIVG01008523001 Vitis vinifera HOM05D004543 ORTHO05D006042 0.0e+00 1085.9 746 73.9
CANSAT80G2145 Cannabis sativa HOM05D004543 ORTHO05D006042 0.0e+00 1085.1 749 73.0
Gorai.007G187600 Gossypium raimondii HOM05D004543 ORTHO05D006042 0.0e+00 1081.2 751 73.1
Gohir.A11G168800 Gossypium hirsutum HOM05D004543 ORTHO05D006042 0.0e+00 1080.9 751 73.4
CSS0037462 Camellia sinensis var. sinensis HOM05D004543 ORTHO05D006042 0.0e+00 1079.3 757 72.3
Glyma.05G047300 Glycine max HOM05D004543 ORTHO05D006042 0.0e+00 1079.3 752 72.9
Medtr4g103610 Medicago truncatula HOM05D004543 ORTHO05D006042 0.0e+00 1076.6 754 72.4
arahy.Tifrunner.gnm1.ann1.28ZGNX Arachis hypogaea HOM05D004543 ORTHO05D006042 0.0e+00 1075.8 751 71.6
Actinidia25587 Actinidia chinensis HOM05D004543 ORTHO05D006042 1.0e-311 1073.2 749 71.4
Eucgr.B00121 Eucalyptus grandis HOM05D004543 ORTHO05D006042 1.6e-311 1072.4 750 73.3
Nn3g16500 Nelumbo nucifera HOM05D004543 ORTHO05D006042 3.6e-311 1071.2 739 72.9
arahy.Tifrunner.gnm1.ann1.9QW7J0 Arachis hypogaea HOM05D004543 ORTHO05D006042 4.7e-311 1070.8 751 71.6
Lj4g0012876 Lotus japonicus HOM05D004543 ORTHO05D006042 4.7e-311 1070.8 752 72.7
Actinidia15838 Actinidia chinensis HOM05D004543 ORTHO05D006042 6.7e-310 1067.0 758 71.0
vmacro19212 Vaccinium macrocarpon HOM05D004543 ORTHO05D006042 1.5e-309 1065.8 758 70.7
PGR083G0162 Punica granatum HOM05D004543 ORTHO05D006042 1.2e-306 1056.2 762 70.6
Lj9C477T19 Lonicera japonica HOM05D004543 ORTHO05D006042 3.4e-306 1054.7 783 69.2
Aqoxy5G03415 Aquilegia oxysepala HOM05D004543 ORTHO05D006042 5.9e-306 1053.9 742 70.8
ClCG11G005570 Citrullus lanatus HOM05D004543 ORTHO05D006042 1.7e-305 1052.4 754 71.4
Cpa.g.sc13.138 Carica papaya HOM05D004543 ORTHO05D006042 2.2e-305 1052.0 756 71.8
CsaV3_6G002430 Cucumis sativus L. HOM05D004543 ORTHO05D006042 8.5e-305 1050.0 752 71.3
Sed0026192 Sechium edule HOM05D004543 ORTHO05D006042 1.0e-302 1043.1 751 71.5
THA.LOC104811593 Tarenaya hassleriana HOM05D004543 ORTHO05D006042 4.8e-300 1034.2 752 69.4
Sed0023388 Sechium edule HOM05D004543 ORTHO05D006042 1.4e-299 1032.7 751 70.7
AL7G28340 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 1.5e-298 1029.2 757 69.9
Carub.0007s1621 Capsella rubella HOM05D004543 ORTHO05D006042 1.3e-297 1026.2 755 69.3
Migut.I00508 Erythranthe guttata HOM05D004543 ORTHO05D006042 1.3e-297 1026.2 752 69.9
Hund02429 Selenicereus undatus HOM05D004543 ORTHO05D006042 8.5e-297 1023.5 746 69.3
MELO3C025044.2 Cucumis melo HOM05D004543 ORTHO05D006042 1.1e-296 1023.1 752 69.5
AT4G24840 Arabidopsis thaliana HOM05D004543 ORTHO05D006042 2.7e-295 1018.5 757 69.2
PSO782G5417 Papaver somniferum HOM05D004543 ORTHO05D006042 1.8e-294 1015.8 747 68.3
Oeu056011.1 Olea europaea HOM05D004543 ORTHO05D006042 9.7e-293 1010.0 757 67.1
AUR62029871 Chenopodium quinoa HOM05D004543 ORTHO05D006042 1.7e-292 1009.2 754 68.0
PSO063G5574 Papaver somniferum HOM05D004543 ORTHO05D006042 1.4e-291 1006.1 747 67.7
Aa31LG7G11000 Aethionema arabicum HOM05D004543 ORTHO05D006042 1.8e-291 1005.7 780 66.7
Thhalv10024490m.g Eutrema salsugineum HOM05D004543 ORTHO05D006042 2.4e-291 1005.4 757 67.9
Hma1.2p1_1271F.1_g271760 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 2.9e-289 998.4 710 71.1
Lsat_1_v5_gn_4_76761 Lactuca sativa HOM05D004543 ORTHO05D006042 5.0e-289 997.7 770 66.4
Cc07_g18860 Coffea canephora HOM05D004543 ORTHO05D006042 1.9e-288 995.7 760 67.2
SGA_v2.0_scaffold161G37784 Striga asiatica HOM05D004543 ORTHO05D006042 5.5e-288 994.2 752 68.2
EL10As4g23416 Beta vulgaris HOM05D004543 ORTHO05D006042 3.6e-287 991.5 752 68.5
C01p20140 Brassica napus HOM05D004543 ORTHO05D006042 8.8e-286 986.9 759 66.8
BolC1t01943H Brassica oleracea HOM05D004543 ORTHO05D006042 8.8e-286 986.9 759 66.8
Sp7g22830 Schrenkiella parvula HOM05D004543 ORTHO05D006042 1.1e-285 986.5 757 66.8
A01p16150 Brassica napus HOM05D004543 ORTHO05D006042 2.6e-285 985.3 757 66.7
BraA01t01551Z Brassica rapa HOM05D004543 ORTHO05D006042 2.6e-285 985.3 757 66.7
BcaC06g32853 Brassica carinata HOM05D004543 ORTHO05D006042 4.8e-284 981.1 749 67.4
BolC7t45874H Brassica oleracea HOM05D004543 ORTHO05D006042 4.8e-284 981.1 749 67.4
Carub.0003s0428 Capsella rubella HOM05D004543 ORTHO05D006042 2.4e-283 978.8 749 66.1
C07p53840 Brassica napus HOM05D004543 ORTHO05D006042 9.1e-283 976.9 749 67.3
HanXRQChr09g0273071 Helianthus annuus HOM05D004543 ORTHO05D006042 2.6e-282 975.3 765 65.8
FAN08G2446 Fragaria x ananassa HOM05D004543 ORTHO05D006042 4.5e-282 974.5 771 66.7
PGSC0003DMG400026304 Solanum tuberosum HOM05D004543 ORTHO05D006042 7.7e-282 973.8 761 64.9
Nitab4.5_0001187g0130 Nicotiana tabacum HOM05D004543 ORTHO05D006042 1.7e-281 972.6 759 65.2
A03p55600 Brassica napus HOM05D004543 ORTHO05D006042 3.8e-281 971.5 749 66.9
BraA03t14627Z Brassica rapa HOM05D004543 ORTHO05D006042 3.8e-281 971.5 749 66.9
AL3G15410 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 6.5e-281 970.7 747 66.4
Sopen08g002610 Solanum pennellii HOM05D004543 ORTHO05D006042 8.5e-281 970.3 756 65.3
unitig_8.g3033 Utricularia gibba HOM05D004543 ORTHO05D006042 3.2e-280 968.4 762 64.6
Nitab4.5_0002497g0060 Nicotiana tabacum HOM05D004543 ORTHO05D006042 4.2e-280 968.0 761 65.7
Migut.I00509 Erythranthe guttata HOM05D004543 ORTHO05D006042 3.0e-278 961.8 746 67.3
Psat0s3466g0040 Pisum sativum HOM05D004543 ORTHO05D006042 6.3e-276 954.1 622 76.8
TAR622G0482 Trochodendron aralioides HOM05D004543 ORTHO05D006042 1.2e-274 949.9 679 71.1
ECA232G1394 Erigeron canadensis HOM05D004543 ORTHO05D006042 8.5e-273 943.7 745 64.3
Peaxi162Scf00045g00192 Petunia axillaris HOM05D004543 ORTHO05D006042 2.6e-269 932.2 759 63.6
CAN.G906.5 Capsicum annuum HOM05D004543 ORTHO05D006042 2.0e-266 922.5 762 63.4
Sp6g25960 Schrenkiella parvula HOM05D004543 ORTHO05D006042 3.0e-262 908.7 746 63.0
BcaNung06004 Brassica carinata HOM05D004543 ORTHO05D006042 6.3e-260 901.0 695 67.2
ATR0561G088 Amborella trichopoda HOM05D004543 ORTHO05D006042 6.1e-255 884.4 728 62.5
TPR.G19235 Trifolium pratense HOM05D004543 ORTHO05D006042 4.0e-254 881.7 646 71.7
CDE05G1945 Ceratophyllum demersum HOM05D004543 ORTHO05D006042 4.6e-250 868.2 746 60.5
AUR62025843 Chenopodium quinoa HOM05D004543 ORTHO05D006042 1.3e-249 866.7 657 66.5
Os03g0849600 Oryza sativa ssp. japonica HOM05D004543 ORTHO05D006042 5.0e-249 864.8 766 58.6
Zm00001eb210790 Zea mays HOM05D004543 ORTHO05D006042 3.3e-248 862.1 745 60.3
C03p10280 Brassica napus HOM05D004543 ORTHO05D006042 1.8e-246 856.3 748 61.1
BraA03t10204Z Brassica rapa HOM05D004543 ORTHO05D006042 1.8e-246 856.3 748 61.1
SEGI_19802 Sequoiadendron giganteum HOM05D004543 ORTHO05D006042 1.8e-246 856.3 757 59.0
BolC3t13508H Brassica oleracea HOM05D004543 ORTHO05D006042 4.0e-246 855.1 754 60.5
A03p08790 Brassica napus HOM05D004543 ORTHO05D006042 2.6e-245 852.4 755 60.0
SHI28598 Sapria himalayana HOM05D004543 ORTHO05D006042 2.6e-245 852.4 817 57.0
BcaB01g05188 Brassica carinata HOM05D004543 ORTHO05D006042 6.2e-239 831.2 725 60.7
Mapoly0003s0046 Marchantia polymorpha HOM05D004543 ORTHO05D006042 8.7e-225 784.3 765 55.2
Dinv04875 Davidia involucrata HOM05D004543 ORTHO05D006042 1.9e-219 766.5 527 71.9
BcaNung04937 Brassica carinata HOM05D004543 ORTHO05D006042 3.9e-217 758.8 717 57.6
HPP92_007000 Vanilla planifolia HOM05D004543 ORTHO05D006042 2.5e-208 729.6 754 53.2
Sc04g0000730 Simmondsia chinensis HOM05D004543 ORTHO05D006042 7.4e-208 728.0 534 67.6
AagrBONN_evm.TU.Sc2ySwM_344.2190 Anthoceros agrestis HOM05D004543 ORTHO05D006042 1.3e-207 727.2 744 51.3
Rhsim08G0188800 Rhododendron simsii HOM05D004543 ORTHO05D006042 1.6e-207 726.9 529 69.0
Pp3c14_17740 Physcomitrium patens HOM05D004543 ORTHO05D006042 3.4e-205 719.2 755 52.1
Pp3c17_20170 Physcomitrium patens HOM05D004543 ORTHO05D006042 1.1e-203 714.1 758 51.8
Solyc08g006660.2 Solanum lycopersicum HOM05D004543 ORTHO05D006042 2.1e-202 709.9 536 68.1
CARHR232260 Cardamine hirsuta HOM05D004543 ORTHO05D006042 1.8e-198 696.8 535 65.8
Sabra12G0070400 Salix brachista HOM05D004543 ORTHO05D006042 7.7e-189 664.8 389 88.4
SMO347G0349 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 1.4e-185 654.1 731 49.0
DCAR_026221 Daucus carota HOM05D004543 ORTHO05D006042 2.0e-176 623.6 753 48.3
CBR_g49627 Chara braunii HOM05D004543 ORTHO05D006042 4.4e-160 569.3 601 50.9
Zm00001eb064480 Zea mays HOM05D004543 ORTHO05D006042 6.8e-137 492.3 386 65.0
Manes.14G052401 Manihot esculenta HOM05D004543 ORTHO05D006042 7.8e-133 478.8 347 69.5
Medtr3g105000 Medicago truncatula HOM05D004543 ORTHO05D006042 2.3e-116 424.1 480 51.0
PRCOL_00002621 Prasinoderma coloniale HOM05D004543 ORTHO05D006042 4.6e-109 399.8 728 35.3
MCO07G105 Micromonas commoda HOM05D004543 ORTHO05D006042 2.9e-87 327.4 757 30.1
Cre09.g402750 Chlamydomonas reinhardtii HOM05D004543 ORTHO05D006042 9.3e-78 295.8 836 28.6
Sc04g0000720 Simmondsia chinensis HOM05D004543 ORTHO05D006042 1.0e-76 292.4 227 68.7
Hma1.2p1_0140F.1_g063450 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 1.1e-73 282.3 228 62.7
HPP92_006979 Vanilla planifolia HOM05D004543 ORTHO05D006042 2.7e-69 267.7 515 37.7
Hma1.2p1_0140F.1_g063430 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 2.0e-51 208.4 223 54.3
Medtr3g105005 Medicago truncatula HOM05D004543 ORTHO05D006042 2.7e-45 188.0 193 56.5
Medtr7g104380 Medicago truncatula HOM05D004543 ORTHO05D006042 1.9e-38 165.2 136 64.7
Lsat_1_v5_gn_5_92440 Lactuca sativa HOM05D004543 ORTHO05D006042 1.6e-37 162.2 151 57.6
TPR.G18590 Trifolium pratense HOM05D001327 ORTHO05D002270 1.3e-34 152.5 121 59.5
Rhsim02G0055400 Rhododendron simsii HOM05D004543 ORTHO05D006042 6.6e-31 140.2 91 73.6
Manes.14G052501 Manihot esculenta HOM05D004543 ORTHO05D006042 6.8e-28 130.2 237 42.6
SEGI_01008 Sequoiadendron giganteum HOM05D004543 ORTHO05D037602 9.8e-27 126.3 100 60.0
TPR.G34490 Trifolium pratense HOM05D004543 ORTHO05D006042 3.7e-26 124.4 102 59.8
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 4.9e-26 124.0 141 49.6
Rhsim04G0209800 Rhododendron simsii HOM05D004543 ORTHO05D006042 2.0e-24 118.6 132 50.8
vmacro20276 Vaccinium macrocarpon HOM05D004543 ORTHO05D037602 4.7e-21 107.5 220 34.1
PSO675G5444 Papaver somniferum HOM05D004543 ORTHO05D010954 1.8e-20 105.5 229 32.8
Hma1.2p1_0140F.1_g063440 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 2.9e-18 98.2 75 64.0
SMO117G0159 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 3.7e-18 97.8 98 50.0
SMO301G0055 Selaginella moellendorffii HOM05D004543 ORTHO05D000231 4.6e-16 90.9 276 26.8
TPR.G19226 Trifolium pratense HOM05D004543 ORTHO05D006042 7.8e-16 90.1 56 83.9
Medtr1g076750 Medicago truncatula HOM05D004543 ORTHO05D006042 3.0e-15 88.2 79 59.5
Medtr0004s0190 Medicago truncatula HOM05D004543 ORTHO05D260927 9.5e-14 83.2 67 64.2
Medtr6g087290 Medicago truncatula HOM05D004543 ORTHO05D006042 9.5e-14 83.2 101 46.5
TPR.G22932 Trifolium pratense HOM05D004543 ORTHO05D037602 3.6e-13 81.3 92 45.7
SMO250G0003 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 2.0e-11 75.5 66 57.6
FAN06G0151 Fragaria x ananassa HOM05D004543 ORTHO05D022695 4.4e-11 74.3 118 38.1
FAN06G1316 Fragaria x ananassa HOM05D004543 ORTHO05D022695 9.9e-11 73.2 65 56.9
Medtr5g009630 Medicago truncatula HOM05D004543 ORTHO05D004261 4.9e-10 70.9 55 65.5
FvH4_7g19080 Fragaria vesca HOM05D000254 ORTHO05D022695 6.4e-10 70.5 65 55.4
FAN08G3116 Fragaria x ananassa HOM05D003545 ORTHO05D004720 1.2e-08 66.2 120 38.3
Lsat_1_v5_gn_3_118241 Lactuca sativa HOM05D004543 ORTHO05D001664 3.9e-07 61.2 99 36.4
FAN18G2207 Fragaria x ananassa HOM05D003545 ORTHO05D004720 9.5e-06 56.6 115 35.7


User provided reference genes

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