Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra15G0115100 Salix brachista HOM05D005613 ORTHO05D006903 1.5e-214 749.2 367 100.0
Potri.015G093500 Populus trichocarpa HOM05D005613 ORTHO05D006903 3.9e-146 521.9 304 86.5
CiPaw.11G009100 Carya illinoinensis HOM05D005613 ORTHO05D006903 2.2e-133 479.6 306 77.1
Thecc.03G126700 Theobroma cacao HOM05D005613 ORTHO05D006903 1.9e-132 476.5 304 77.6
Manes.06G118100 Manihot esculenta HOM05D005613 ORTHO05D006903 2.1e-131 473.0 304 76.6
Manes.14G052800 Manihot esculenta HOM05D005613 ORTHO05D006903 1.3e-130 470.3 304 76.3
TWI23G0755 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 6.7e-130 468.0 304 75.3
Eucgr.K02737 Eucalyptus grandis HOM05D005613 ORTHO05D006903 2.5e-129 466.1 292 78.1
PGR044G0561 Punica granatum HOM05D005613 ORTHO05D006903 2.5e-129 466.1 304 75.0
TAR371G0420 Trochodendron aralioides HOM05D005613 ORTHO05D006903 4.3e-129 465.3 304 73.7
PSO478G0845 Papaver somniferum HOM05D005613 ORTHO05D006903 9.6e-129 464.2 304 75.0
Duzib205G1234 Durio zibethinus HOM05D005613 ORTHO05D006903 1.6e-128 463.4 293 77.1
PSO017G2706 Papaver somniferum HOM05D005613 ORTHO05D006903 1.6e-128 463.4 306 75.2
CSS0000406 Camellia sinensis var. sinensis HOM05D005613 ORTHO05D006903 4.8e-128 461.8 293 76.1
Medtr3g089010 Medicago truncatula HOM05D005613 ORTHO05D006903 6.2e-128 461.5 299 75.9
PSO017G3077 Papaver somniferum HOM05D005613 ORTHO05D006903 6.2e-128 461.5 304 74.7
Gohir.A07G051800 Gossypium hirsutum HOM05D005613 ORTHO05D006903 1.1e-127 460.7 293 76.8
PSO675G0985 Papaver somniferum HOM05D005613 ORTHO05D006903 1.4e-127 460.3 304 74.7
Gohir.D07G056300 Gossypium hirsutum HOM05D005613 ORTHO05D006903 1.8e-127 459.9 293 76.5
Gorai.001G059700 Gossypium raimondii HOM05D005613 ORTHO05D006903 1.8e-127 459.9 293 76.5
TWI39G1237 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 1.8e-127 459.9 304 73.7
Phvul.009G167500 Phaseolus vulgaris HOM05D005613 ORTHO05D006903 3.1e-127 459.1 292 75.7
MELO3C002354.2 Cucumis melo HOM05D005613 ORTHO05D006903 5.3e-127 458.4 303 74.3
CsaV3_1G009570 Cucumis sativus L. HOM05D005613 ORTHO05D006903 6.9e-127 458.0 303 74.3
Lj1g0013310 Lotus japonicus HOM05D005613 ORTHO05D006903 6.9e-127 458.0 293 75.4
VMungo1309G0937 Vigna mungo HOM05D005613 ORTHO05D006903 6.9e-127 458.0 320 70.6
Dinv11157 Davidia involucrata HOM05D005613 ORTHO05D006903 9.0e-127 457.6 304 73.0
MD06G1143700 Malus domestica HOM05D005613 ORTHO05D006903 9.0e-127 457.6 304 73.7
MD14G1159000 Malus domestica HOM05D005613 ORTHO05D006903 9.0e-127 457.6 304 73.4
Glyma.04G194500 Glycine max HOM05D005613 ORTHO05D006903 2.0e-126 456.4 293 74.7
RcHm_v2.0_Chr7g0190451 Rosa chinensis HOM05D005613 ORTHO05D006903 2.0e-126 456.4 304 73.0
THA.LOC104803145 Tarenaya hassleriana HOM05D005613 ORTHO05D006903 2.6e-126 456.1 304 72.4
Prupe.5G152900 Prunus persica HOM05D005613 ORTHO05D006903 3.4e-126 455.7 297 74.4
GSVIVG01008514001 Vitis vinifera HOM05D005613 ORTHO05D006903 4.5e-126 455.3 314 71.0
Ciclev10021465m.g Citrus clementina HOM05D005613 ORTHO05D006903 7.6e-126 454.5 302 74.2
Psat5g169720 Pisum sativum HOM05D005613 ORTHO05D006903 9.9e-126 454.1 292 75.7
Actinidia15836 Actinidia chinensis HOM05D005613 ORTHO05D006903 1.3e-125 453.8 298 74.2
Glyma.06G171500 Glycine max HOM05D005613 ORTHO05D006903 3.8e-125 452.2 296 73.6
CANSAT80G2472 Cannabis sativa HOM05D005613 ORTHO05D006903 4.9e-125 451.8 298 72.8
CARHR258110 Cardamine hirsuta HOM05D005613 ORTHO05D006903 1.4e-124 450.3 295 72.9
Aqoxy5G04126 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 2.4e-124 449.5 301 72.1
AL8G24500 Arabidopsis lyrata HOM05D005613 ORTHO05D006903 4.2e-124 448.7 295 72.9
AT5G50375 Arabidopsis thaliana HOM05D005613 ORTHO05D006903 4.2e-124 448.7 296 72.6
TPR.G26132 Trifolium pratense HOM05D005613 ORTHO05D006903 7.1e-124 448.0 328 69.2
Sed0021273 Sechium edule HOM05D005613 ORTHO05D006903 9.3e-124 447.6 292 74.3
FvH4_5g07950 Fragaria vesca HOM05D005613 ORTHO05D006903 2.7e-123 446.0 304 71.7
Rhsim08G0188600 Rhododendron simsii HOM05D005613 ORTHO05D006903 3.5e-123 445.7 306 72.9
AUR62032039 Chenopodium quinoa HOM05D005613 ORTHO05D006903 7.9e-123 444.5 304 72.0
SpUn0050_0040 Schrenkiella parvula HOM05D005613 ORTHO05D006903 1.3e-122 443.7 299 71.6
MSTRG.17588 Avicennia marina HOM05D005613 ORTHO05D006903 2.3e-122 443.0 304 70.7
QL10p004130 Quercus lobata HOM05D005613 ORTHO05D006903 2.3e-122 443.0 309 71.8
QL10p004191 Quercus lobata HOM05D005613 ORTHO05D006903 3.0e-122 442.6 309 71.8
Sed0001462 Sechium edule HOM05D005613 ORTHO05D006903 3.0e-122 442.6 292 73.3
Haze_07235 Corylus avellana HOM05D005613 ORTHO05D006903 5.1e-122 441.8 339 66.7
Aa31LG3G6910 Aethionema arabicum HOM05D005613 ORTHO05D006903 6.7e-122 441.4 297 72.1
Carub.0008s1047 Capsella rubella HOM05D005613 ORTHO05D006903 1.5e-121 440.3 298 71.1
Lalb_Chr11g0069651 Lupinus albus HOM05D005613 ORTHO05D006903 1.9e-121 439.9 304 72.0
Thhalv10014300m.g Eutrema salsugineum HOM05D005613 ORTHO05D006903 2.5e-121 439.5 304 70.4
arahy.Tifrunner.gnm1.ann1.91S2FI Arachis hypogaea HOM05D005613 ORTHO05D006903 5.6e-121 438.3 322 69.3
CAN.G767.35 Capsicum annuum HOM05D005613 ORTHO05D006903 5.6e-121 438.3 304 68.1
Migut.N02308 Erythranthe guttata HOM05D005613 ORTHO05D006903 7.4e-121 438.0 304 71.4
EL10Ac5g11023 Beta vulgaris HOM05D005613 ORTHO05D006903 2.8e-120 436.0 304 70.7
ClCG03G003690 Citrullus lanatus HOM05D005613 ORTHO05D006903 3.7e-120 435.6 337 65.9
Peaxi162Scf00378g00519 Petunia axillaris HOM05D005613 ORTHO05D006903 6.2e-120 434.9 304 68.8
SalBow7G2516 Salvia bowleyana HOM05D005613 ORTHO05D006903 6.2e-120 434.9 299 70.6
Solyc12g098640.3 Solanum lycopersicum HOM05D005613 ORTHO05D006903 8.2e-120 434.5 293 69.6
PGSC0003DMG400004674 Solanum tuberosum HOM05D005613 ORTHO05D006903 8.2e-120 434.5 293 69.3
BcaC01g04807 Brassica carinata HOM05D005613 ORTHO05D006903 1.4e-119 433.7 296 71.3
Hund02427 Selenicereus undatus HOM05D005613 ORTHO05D006903 1.8e-119 433.3 305 70.2
Sopen12g033400 Solanum pennellii HOM05D005613 ORTHO05D006903 4.0e-119 432.2 293 69.3
Nitab4.5_0011040g0030 Nicotiana tabacum HOM05D005613 ORTHO05D006903 9.0e-119 431.0 300 68.3
Nitab4.5_0007541g0020 Nicotiana tabacum HOM05D005613 ORTHO05D006903 1.2e-118 430.6 304 68.1
C03p33570 Brassica napus HOM05D005613 ORTHO05D006903 2.0e-118 429.9 298 71.1
BcaB01g02892 Brassica carinata HOM05D005613 ORTHO05D006903 2.6e-118 429.5 296 70.3
ECA232G4063 Erigeron canadensis HOM05D005613 ORTHO05D006903 3.4e-118 429.1 302 71.2
Lsat_1_v5_gn_4_76740 Lactuca sativa HOM05D005613 ORTHO05D006903 3.4e-118 429.1 304 70.7
BolC3t15677H Brassica oleracea HOM05D005613 ORTHO05D006903 1.0e-117 427.6 304 69.7
A03p27830 Brassica napus HOM05D005613 ORTHO05D006903 1.7e-117 426.8 303 69.6
Actinidia25589 Actinidia chinensis HOM05D005613 ORTHO05D006903 3.8e-117 425.6 271 76.4
BraA03t11994Z Brassica rapa HOM05D005613 ORTHO05D006903 3.8e-117 425.6 309 68.3
Cc07_g17610 Coffea canephora HOM05D005613 ORTHO05D006903 3.8e-117 425.6 289 68.9
HanXRQChr09g0273061 Helianthus annuus HOM05D005613 ORTHO05D006903 3.8e-117 425.6 304 69.4
Lj9C477T8 Lonicera japonica HOM05D005613 ORTHO05D006903 8.4e-117 424.5 304 71.4
Cc00_g03610 Coffea canephora HOM05D005613 ORTHO05D006903 3.2e-116 422.5 291 68.4
unitig_27.g24986 Utricularia gibba HOM05D005613 ORTHO05D006903 5.5e-116 421.8 291 68.4
arahy.Tifrunner.gnm1.ann1.AY81KB Arachis hypogaea HOM05D005613 ORTHO05D006903 6.0e-115 418.3 301 71.4
FAN13G2894 Fragaria x ananassa HOM05D005613 ORTHO05D006903 1.3e-114 417.2 304 68.1
A09p55960 Brassica napus HOM05D005613 ORTHO05D006903 1.8e-114 416.8 300 68.0
BraA09t40998Z Brassica rapa HOM05D005613 ORTHO05D006903 3.0e-114 416.0 301 68.1
Zm00001eb265520 Zea mays HOM05D005613 ORTHO05D006903 5.7e-113 411.8 303 68.3
BolC8t51467H Brassica oleracea HOM05D005613 ORTHO05D006903 8.2e-112 407.9 298 66.8
BcaB08g35134 Brassica carinata HOM05D005613 ORTHO05D006903 1.1e-111 407.5 298 66.4
C08p38940 Brassica napus HOM05D005613 ORTHO05D006903 2.4e-111 406.4 298 66.1
ATR0680G053 Amborella trichopoda HOM05D005613 ORTHO05D006903 2.0e-110 403.3 295 64.7
FAN18G4059 Fragaria x ananassa HOM05D005613 ORTHO05D006903 2.0e-110 403.3 344 61.6
CDE02G3999 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 5.9e-110 401.7 297 66.3
DCAR_021614 Daucus carota HOM05D005613 ORTHO05D006903 1.1e-108 397.5 295 65.8
DCAR_016405 Daucus carota HOM05D005613 ORTHO05D006903 1.4e-108 397.1 304 65.5
Nn4g22373 Nelumbo nucifera HOM05D005613 ORTHO05D006903 1.6e-107 393.7 304 65.1
Dinv04871 Davidia involucrata HOM05D005613 ORTHO05D006903 3.6e-107 392.5 306 67.0
SEGI_09495 Sequoiadendron giganteum HOM05D005613 ORTHO05D006903 4.6e-107 392.1 304 62.2
unitig_699.g19129 Utricularia gibba HOM05D005613 ORTHO05D006903 3.0e-106 389.4 298 64.1
FAN08G1682 Fragaria x ananassa HOM05D005613 ORTHO05D006903 1.1e-103 380.9 332 60.5
Cpa.g.sc13.142 Carica papaya HOM05D005613 ORTHO05D006903 1.8e-103 380.2 264 71.6
arahy.Tifrunner.gnm1.ann1.LN4RIT Arachis hypogaea HOM05D005613 ORTHO05D006903 2.4e-103 379.8 253 74.3
BcaC07g40897 Brassica carinata HOM05D005613 ORTHO05D006903 4.1e-103 379.0 302 62.6
vmacro19214 Vaccinium macrocarpon HOM05D005613 ORTHO05D006903 1.9e-100 370.2 387 54.0
COL.COLO4_28085 Corchorus olitorius HOM05D005613 ORTHO05D006903 1.7e-96 357.1 237 74.3
AUR62036512 Chenopodium quinoa HOM05D005613 ORTHO05D006903 2.8e-96 356.3 257 69.6
SMO180G0005 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 1.4e-92 344.0 293 54.9
CDE09G1331 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 4.2e-92 342.4 304 56.9
BcaB05g24059 Brassica carinata HOM05D005613 ORTHO05D006903 9.4e-92 341.3 313 58.5
SpUn0508_0010 Schrenkiella parvula HOM05D005613 ORTHO05D006903 3.7e-88 329.3 229 69.9
Mapoly0019s0004 Marchantia polymorpha HOM05D005613 ORTHO05D006903 8.2e-88 328.2 302 53.3
Aqoxy1G01617 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 5.3e-87 325.5 262 63.0
Aqoxy22s001 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 3.5e-86 322.8 216 72.7
Pp3c14_22450 Physcomitrium patens HOM05D005613 ORTHO05D006903 1.6e-83 313.9 289 54.0
CiPaw.12G041000 Carya illinoinensis HOM05D005613 ORTHO05D006903 4.0e-82 309.3 210 73.3
SHI39270 Sapria himalayana HOM05D005613 ORTHO05D006903 7.2e-76 288.5 209 68.9
SHI42710 Sapria himalayana HOM05D005613 ORTHO05D006903 7.2e-76 288.5 209 68.9
Cre16.g657300 Chlamydomonas reinhardtii HOM05D005613 ORTHO05D006903 3.5e-70 269.6 299 46.5
AagrBONN_evm.TU.Sc2ySwM_362.2466 Anthoceros agrestis HOM05D005613 ORTHO05D006903 7.2e-68 261.9 243 53.5
AUR62032713 Chenopodium quinoa HOM05D005613 ORTHO05D006903 1.6e-67 260.8 245 58.8
AagrBONN_evm.TU.Sc2ySwM_117.1130 Anthoceros agrestis HOM05D005613 ORTHO05D006903 8.9e-66 255.0 184 62.5
SGA_v2.0_scaffold42G16110 Striga asiatica HOM05D005613 ORTHO05D006903 4.3e-60 236.1 324 44.8
HPP92_006202 Vanilla planifolia HOM05D005613 ORTHO05D006903 3.2e-55 219.9 175 65.1
SMO353G0009 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 8.6e-53 211.8 291 41.6
CBR_g48821 Chara braunii HOM05D005613 ORTHO05D006903 2.1e-51 207.2 226 45.1
SGA_v2.0_scaffold115G32075 Striga asiatica HOM05D005613 ORTHO05D006903 2.0e-49 200.7 170 59.4
SGA_v2.0_scaffold115G32072 Striga asiatica HOM05D000001 ORTHO05D000003 1.5e-44 184.5 227 44.5
Ah.11g044830 Amaranthus hybridus HOM05D006563 ORTHO05D008154 2.1e-43 180.6 151 60.9
HPP92_006201 Vanilla planifolia HOM05D005613 ORTHO05D006903 1.7e-40 171.0 98 78.6
MCO03G530 Micromonas commoda HOM05D005613 ORTHO05D006903 5.8e-33 146.0 247 35.6
PRCOL_00007276 Prasinoderma coloniale HOM05D005613 ORTHO05D006903 7.6e-33 145.6 308 32.8
SGA_v2.0_scaffold3G01513 Striga asiatica HOM05D005613 ORTHO05D006903 7.8e-30 135.6 116 59.5
Os11g0302500 Oryza sativa ssp. japonica HOM05D005613 ORTHO05D006903 2.3e-29 134.0 84 70.2
CBR_g48823 Chara braunii HOM05D005613 ORTHO05D006903 2.2e-16 90.9 67 61.2
arahy.Tifrunner.gnm1.ann1.W1BQBA Arachis hypogaea HOM05D005613 ORTHO05D006903 3.9e-13 80.1 45 80.0
SEGI_05867 Sequoiadendron giganteum HOM05D005613 ORTHO05D006903 1.1e-12 78.6 53 67.9


User provided reference genes

Program Settings