Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra15G0104100 Salix brachista HOM05D004430 ORTHO05D005088 0.0e+00 2836.2 1471 100.0
Potri.015G079800 Populus trichocarpa HOM05D004430 ORTHO05D005088 0.0e+00 2362.0 1526 84.5
Potri.012G088500 Populus trichocarpa HOM05D004430 ORTHO05D005088 0.0e+00 1978.0 1534 73.3
Sabra12G0063700 Salix brachista HOM05D004430 ORTHO05D005088 0.0e+00 1864.7 1614 67.5
Atru.chr9.2519 Acer truncatum HOM05D004430 ORTHO05D005088 0.0e+00 1325.8 1675 50.8
Manes.06G107200 Manihot esculenta HOM05D004430 ORTHO05D005088 0.0e+00 1270.8 1652 50.8
Manes.06G107300 Manihot esculenta HOM05D004430 ORTHO05D005088 0.0e+00 1268.8 1652 50.2
Dinv20629 Davidia involucrata HOM05D004430 ORTHO05D005088 0.0e+00 1250.7 1612 49.8
Thecc.03G018800 Theobroma cacao HOM05D004430 ORTHO05D005088 0.0e+00 1221.8 1631 50.5
COL.COLO4_30100 Corchorus olitorius HOM05D004430 ORTHO05D005088 0.0e+00 1201.8 1635 49.3
Gohir.A03G089900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 0.0e+00 1196.0 1614 49.8
Gorai.005G135600 Gossypium raimondii HOM05D004430 ORTHO05D005088 0.0e+00 1184.1 1615 49.5
Gohir.D02G117900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 0.0e+00 1182.5 1615 49.3
QL10p008934 Quercus lobata HOM05D004430 ORTHO05D005088 0.0e+00 1167.9 1613 48.9
Dinv38562 Davidia involucrata HOM05D004430 ORTHO05D005088 0.0e+00 1160.6 1703 45.6
Duzib084G1065 Durio zibethinus HOM05D004430 ORTHO05D005088 0.0e+00 1138.3 1628 47.4
Duzib068G0887 Durio zibethinus HOM05D004430 ORTHO05D005088 0.0e+00 1128.6 1558 48.1
CSS0010843 Camellia sinensis var. sinensis HOM05D004430 ORTHO05D005088 0.0e+00 1128.2 1610 47.9
MD06G1170800 Malus domestica HOM05D004430 ORTHO05D005088 0.0e+00 1121.3 1629 47.9
Duzib205G1695 Durio zibethinus HOM05D004430 ORTHO05D005088 0.0e+00 1118.6 1629 47.9
Prupe.5G170400 Prunus persica HOM05D004430 ORTHO05D005088 0.0e+00 1111.7 1706 45.4
GSVIVG01007703001 Vitis vinifera HOM05D004430 ORTHO05D005088 0.0e+00 1103.6 1565 47.3
TWI39G0976 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 0.0e+00 1084.3 1612 46.7
RcHm_v2.0_Chr7g0193171 Rosa chinensis HOM05D004430 ORTHO05D005088 4.0e-311 1072.0 1611 46.2
TWI14G0761 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 2.2e-309 1066.2 1583 46.7
MD14G1176500 Malus domestica HOM05D004430 ORTHO05D005088 4.6e-307 1058.5 1626 46.8
Lj4g0003819 Lotus japonicus HOM05D004430 ORTHO05D005088 1.5e-302 1043.5 1607 45.3
Glyma.17G087600 Glycine max HOM05D004430 ORTHO05D005088 3.1e-295 1019.2 1609 45.2
FvH4_5g05640 Fragaria vesca HOM05D004430 ORTHO05D005088 4.8e-288 995.3 1604 44.6
FAN13G0016 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.3e-285 987.3 1603 44.0
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 2.3e-282 976.5 1597 44.0
arahy.Tifrunner.gnm1.ann1.FBBL0Z Arachis hypogaea HOM05D004430 ORTHO05D005088 5.1e-282 975.3 1624 43.5
FAN18G2048 Fragaria x ananassa HOM05D004430 ORTHO05D005088 2.4e-279 966.5 1596 43.8
VMungo1215G2998 Vigna mungo HOM05D004430 ORTHO05D005088 5.0e-277 958.7 1656 43.4
FAN08G1542 Fragaria x ananassa HOM05D004430 ORTHO05D005088 3.6e-275 952.6 1627 42.8
Lalb_Chr12g0201701 Lupinus albus HOM05D004430 ORTHO05D005088 1.4e-274 950.7 1620 43.1
Lalb_Chr07g0182821 Lupinus albus HOM05D004430 ORTHO05D005088 3.0e-274 949.5 1634 43.5
FAN18G1146 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.1e-273 947.6 1600 43.4
Ciclev10018497m.g Citrus clementina HOM05D004430 ORTHO05D005088 3.3e-273 946.0 1427 45.8
TAR374G1038 Trochodendron aralioides HOM05D004430 ORTHO05D005088 1.3e-272 944.1 1658 42.3
FAN04G2171 Fragaria x ananassa HOM05D004430 ORTHO05D005088 8.2e-272 941.4 1602 42.4
CANSAT80G0620 Cannabis sativa HOM05D004430 ORTHO05D005088 1.9e-268 930.2 1633 42.4
Glyma.05G039400 Glycine max HOM05D004430 ORTHO05D005088 3.6e-267 926.0 1601 42.6
vmacro19413 Vaccinium macrocarpon HOM05D004430 ORTHO05D005088 3.7e-264 916.0 1612 42.3
TPR.G28716 Trifolium pratense HOM05D004430 ORTHO05D005088 2.0e-262 910.2 1577 42.5
Nitab4.5_0003229g0080 Nicotiana tabacum HOM05D004430 ORTHO05D005088 6.5e-261 905.2 1608 41.4
ClCG06G017130 Citrullus lanatus HOM05D004430 ORTHO05D005088 6.8e-258 895.2 1616 41.6
Sopen03g031740 Solanum pennellii HOM05D004430 ORTHO05D005088 5.4e-255 885.6 1611 40.3
CsaV3_1G001360 Cucumis sativus L. HOM05D004430 ORTHO05D005088 2.7e-254 883.2 1584 42.4
MELO3C026283.2 Cucumis melo HOM05D004430 ORTHO05D005088 2.3e-253 880.2 1581 42.2
Solyc03g112660.3 Solanum lycopersicum HOM05D004430 ORTHO05D005088 8.6e-253 878.2 1578 41.6
Eucgr.B00248 Eucalyptus grandis HOM05D004430 ORTHO05D005088 1.1e-252 877.9 1603 40.8
Phvul.003G202300 Phaseolus vulgaris HOM05D004430 ORTHO05D005088 1.1e-252 877.9 1662 41.3
Nitab4.5_0001207g0060 Nicotiana tabacum HOM05D004430 ORTHO05D005088 3.6e-251 872.8 1635 39.8
CiPaw.11G023400 Carya illinoinensis HOM05D004430 ORTHO05D005088 1.4e-250 870.9 1511 42.1
Lalb_Chr13g0297721 Lupinus albus HOM05D004430 ORTHO05D005088 4.9e-248 862.4 1635 41.3
Ca_16155_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 1.4e-247 860.9 1564 41.6
Ca_16154_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 4.1e-247 859.4 1600 41.6
Rhsim08G0174600 Rhododendron simsii HOM05D004430 ORTHO05D005088 1.3e-245 854.4 1604 41.5
Sed0007760 Sechium edule HOM05D004430 ORTHO05D005088 1.0e-242 844.7 1556 41.3
Medtr3g077440 Medicago truncatula HOM05D004430 ORTHO05D005088 9.5e-236 821.6 1611 40.0
PGR083G1025 Punica granatum HOM05D004430 ORTHO05D005088 6.2e-235 818.9 1616 41.1
Oeu036008.4 Olea europaea HOM05D004430 ORTHO05D005088 1.4e-234 817.8 1561 39.0
Sed0016557 Sechium edule HOM05D004430 ORTHO05D005088 4.6e-230 802.7 1598 39.5
THA.LOC104809247 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 2.5e-228 797.0 1593 38.7
Nn3g16781 Nelumbo nucifera HOM05D004430 ORTHO05D005088 3.1e-226 790.0 1672 38.3
CiPaw.12G028500 Carya illinoinensis HOM05D004430 ORTHO05D005088 5.8e-225 785.8 1381 42.6
Peaxi162Scf00089g00174 Petunia axillaris HOM05D004430 ORTHO05D005088 2.9e-224 783.5 1611 38.1
AUR62028764 Chenopodium quinoa HOM05D004430 ORTHO05D005088 7.8e-222 775.4 1635 39.3
CAN.G1166.22 Capsicum annuum HOM05D004430 ORTHO05D005088 1.9e-220 770.8 1620 38.7
Oeu024704.1 Olea europaea HOM05D004430 ORTHO05D005088 4.1e-215 753.1 1636 36.8
TPR.G28721 Trifolium pratense HOM05D004430 ORTHO05D005088 1.0e-213 748.4 1568 38.5
AUR62008183 Chenopodium quinoa HOM05D004430 ORTHO05D005088 2.3e-213 747.3 1613 39.2
SalBow6G6763 Salvia bowleyana HOM05D004430 ORTHO05D005088 2.2e-208 730.7 1622 38.1
SalBow6G6905 Salvia bowleyana HOM05D004430 ORTHO05D005088 3.8e-208 729.9 1622 38.0
EL10Ac5g10708 Beta vulgaris HOM05D004430 ORTHO05D005088 5.4e-207 726.1 1611 38.9
Medtr3g077450 Medicago truncatula HOM05D004430 ORTHO05D005088 9.3e-207 725.3 1557 37.8
THA.LOC104809778 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 7.8e-206 722.2 1595 37.2
Migut.D01964 Erythranthe guttata HOM05D004430 ORTHO05D005088 6.6e-205 719.2 1625 37.8
Psat5g115040 Pisum sativum HOM05D004430 ORTHO05D005088 8.1e-203 712.2 1524 38.1
Hund02762 Selenicereus undatus HOM05D004430 ORTHO05D005088 1.6e-198 698.0 1594 37.8
MBI19_g24062_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 4.6e-198 696.4 1751 35.8
Sc04g0001690 Simmondsia chinensis HOM05D004430 ORTHO05D005088 4.3e-196 689.9 1581 37.3
ECA232G4503 Erigeron canadensis HOM05D004430 ORTHO05D005088 9.9e-193 678.7 1516 37.9
Cc04_g12380 Coffea canephora HOM05D004430 ORTHO05D005088 2.2e-192 677.6 1305 39.9
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 3.7e-187 660.2 1615 36.3
Psat5g115080 Pisum sativum HOM05D004430 ORTHO05D005088 9.0e-186 655.6 1546 36.4
MSTRG.4361 Avicennia marina HOM05D004430 ORTHO05D005088 3.8e-184 650.2 1612 36.3
PSO017G2086 Papaver somniferum HOM05D004430 ORTHO05D005088 1.3e-181 641.7 1688 35.8
Actinidia19338 Actinidia chinensis HOM05D004430 ORTHO05D005088 3.7e-179 633.6 1157 40.5
AT4G24680 Arabidopsis thaliana HOM05D004430 ORTHO05D005088 2.4e-178 630.9 1550 36.5
PSO478G3312 Papaver somniferum HOM05D004430 ORTHO05D005088 2.4e-178 630.9 1689 35.3
Sp7g22670 Schrenkiella parvula HOM05D004430 ORTHO05D005088 2.9e-176 624.0 1572 35.6
PGSC0003DMG402018164 Solanum tuberosum HOM05D004430 ORTHO05D005088 2.7e-174 617.5 1341 35.9
AL7G28520 Arabidopsis lyrata HOM05D004430 ORTHO05D005088 3.9e-173 613.6 1547 35.7
CARHR232060 Cardamine hirsuta HOM05D004430 ORTHO05D005088 7.4e-172 609.4 1565 35.1
Aqoxy3G01105 Aquilegia oxysepala HOM05D004430 ORTHO05D005088 7.7e-169 599.4 1650 34.4
Aa31LG4G9770 Aethionema arabicum HOM05D004430 ORTHO05D005088 5.0e-168 596.7 1549 34.9
Thhalv10024213m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 1.1e-167 595.5 1612 34.0
Thhalv10024214m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 1.1e-167 595.5 1598 34.4
Lsat_1_v5_gn_4_75700 Lactuca sativa HOM05D004430 ORTHO05D005088 1.4e-162 578.6 1496 35.7
Carub.0007s1638 Capsella rubella HOM05D004430 ORTHO05D005088 2.4e-162 577.8 1578 33.5
Haze_07543 Corylus avellana HOM05D004430 ORTHO05D005088 2.4e-162 577.8 1513 33.2
BraA03t14619Z Brassica rapa HOM05D004430 ORTHO05D005088 5.9e-161 573.2 1549 35.2
A03p55450 Brassica napus HOM05D004430 ORTHO05D005088 3.8e-160 570.5 1548 35.1
SGA_v2.0_scaffold7G04148 Striga asiatica HOM05D004430 ORTHO05D005088 1.1e-159 568.9 1603 35.1
C07p53740 Brassica napus HOM05D004430 ORTHO05D005088 1.1e-156 558.9 1541 34.7
BolC7t45865H Brassica oleracea HOM05D004430 ORTHO05D005088 3.3e-156 557.4 1542 34.7
Hma1.2p1_0046F.1_g026730 Hydrangea macrophylla HOM05D004430 ORTHO05D005088 9.1e-154 549.3 1213 39.1
C01p20010 Brassica napus HOM05D004430 ORTHO05D005088 2.1e-150 538.1 1562 33.4
BraA01t01536Z Brassica rapa HOM05D004430 ORTHO05D005088 4.7e-150 537.0 1563 33.9
BcaC06g32869 Brassica carinata HOM05D004430 ORTHO05D005088 9.7e-148 529.3 1548 33.4
BolC1t01928H Brassica oleracea HOM05D004430 ORTHO05D005088 3.1e-146 524.2 1566 33.0
A01p16020 Brassica napus HOM05D004430 ORTHO05D005088 2.7e-145 521.2 1547 33.5
arahy.Tifrunner.gnm1.ann1.I95HTR Arachis hypogaea HOM05D004430 ORTHO05D005088 1.7e-144 518.5 765 45.2
HanXRQChr17g0548691 Helianthus annuus HOM05D004430 ORTHO05D005088 5.2e-141 506.9 1499 33.2
BcaC09g50842 Brassica carinata HOM05D004430 ORTHO05D005088 1.8e-133 481.9 1513 32.8
HanXRQChr11g0348291 Helianthus annuus HOM05D004430 ORTHO05D005088 1.3e-131 475.7 707 46.3
unitig_37.g12744 Utricularia gibba HOM05D004430 ORTHO05D005088 3.5e-129 467.6 1538 33.1
BcaB03g12441 Brassica carinata HOM05D004430 ORTHO05D005088 1.3e-123 449.1 1509 31.7
TAR622G0490 Trochodendron aralioides HOM05D004430 ORTHO05D005088 8.3e-123 446.4 957 38.1
ATR0757G157 Amborella trichopoda HOM05D004430 ORTHO05D005088 9.2e-122 443.0 1644 31.9
MBI10_g44386_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 1.1e-117 429.5 1497 30.9
Actinidia19112 Actinidia chinensis HOM05D004430 ORTHO05D005088 6.2e-102 377.1 341 64.5
Actinidia33085 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.4e-98 365.9 690 39.9
Zm00001eb028710 Zea mays HOM05D004430 ORTHO05D005088 2.4e-77 295.4 1482 28.4
Cpa.g.sc153.6 Carica papaya HOM05D004430 ORTHO05D005088 1.1e-74 286.6 193 79.8
Zm00001eb136860 Zea mays HOM05D004430 ORTHO05D005088 9.3e-74 283.5 1612 27.9
SHI17143 Sapria himalayana HOM05D004430 ORTHO05D005088 6.0e-73 280.8 791 35.4
CDE06G0437 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 2.3e-72 278.9 1528 28.1
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 1.1e-71 276.6 483 40.6
MBI10_g44384_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 2.5e-66 258.8 202 71.3
HPP92_006251 Vanilla planifolia HOM05D004430 ORTHO05D005088 2.0e-60 239.2 1352 28.0
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 3.0e-56 225.3 1501 27.0
CDE02G0036 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 1.3e-54 219.9 202 60.4
HPP92_006241 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.8e-45 189.5 207 56.5
HPP92_024337 Vanilla planifolia HOM05D004430 ORTHO05D005088 3.1e-45 188.7 1588 25.6
Actinidia19111 Actinidia chinensis HOM05D004430 ORTHO05D005088 2.0e-44 186.0 438 37.7
TAR622G0342 Trochodendron aralioides HOM05D004430 ORTHO05D005088 1.7e-30 139.8 88 80.7
Actinidia33086 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.1e-29 137.1 357 34.7
SEGI_40513 Sequoiadendron giganteum HOM05D004430 ORTHO05D005088 2.4e-29 136.0 1846 24.5
Pp3c4_23740 Physcomitrium patens HOM05D004430 ORTHO05D005088 1.2e-28 133.7 498 33.5
Actinidia19337 Actinidia chinensis HOM05D004430 ORTHO05D005088 4.0e-24 118.6 181 44.2
Psat2g086200 Pisum sativum HOM05D004430 ORTHO05D005088 3.4e-23 115.5 178 46.6
Mapoly0057s0099 Marchantia polymorpha HOM05D004430 ORTHO05D005088 2.4e-21 109.4 527 33.0
Psat2g086240 Pisum sativum HOM05D004430 ORTHO05D005088 2.4e-21 109.4 203 43.3
TAR622G0951 Trochodendron aralioides HOM05D004430 ORTHO05D005088 5.0e-19 101.7 113 54.0
Psat2g098600 Pisum sativum HOM05D003093 ORTHO05D005088 1.1e-18 100.5 272 36.0
THA.LOC104816711 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 3.6e-17 95.5 285 31.6
Pp3c26_2830 Physcomitrium patens HOM05D004430 ORTHO05D005088 5.2e-16 91.7 517 29.8
SMO174G0145 Selaginella moellendorffii HOM05D004430 ORTHO05D005088 8.9e-16 90.9 825 26.3
HPP92_024330 Vanilla planifolia HOM05D004430 ORTHO05D005088 2.0e-15 89.7 1432 23.0
THA.LOC104822199 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 7.5e-15 87.8 188 36.7
Pp3c26_2670 Physcomitrium patens HOM05D004430 ORTHO05D005088 9.8e-15 87.4 234 37.6
Pp3c4_22960 Physcomitrium patens HOM05D004430 ORTHO05D005088 1.3e-14 87.0 869 27.2
TAR629G1829 Trochodendron aralioides HOM05D003072 ORTHO05D008464 4.6e-12 78.6 291 30.2
AagrBONN_evm.TU.Sc2ySwM_344.4397 Anthoceros agrestis HOM05D004430 ORTHO05D005088 3.9e-11 75.5 742 28.4
CBR_g19277 Chara braunii HOM05D004430 ORTHO05D005088 6.6e-11 74.7 500 28.0
SHI23780 Sapria himalayana HOM05D004430 ORTHO05D005088 8.0e-09 67.8 142 40.1
Psat0s4895g0040 Pisum sativum HOM05D002020 ORTHO05D005088 6.8e-08 64.7 63 61.9
Psat1g046400 Pisum sativum HOM05D004430 ORTHO05D005088 7.5e-07 61.2 179 35.8


User provided reference genes

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