Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra15G0096800 Salix brachista HOM05D006272 ORTHO05D007989 7.8e-126 453.8 220 100.0
Potri.015G072000 Populus trichocarpa HOM05D006272 ORTHO05D007989 2.5e-116 422.2 220 93.6
Manes.14G069600 Manihot esculenta HOM05D006272 ORTHO05D007989 2.6e-81 305.8 226 68.1
QL10p013391 Quercus lobata HOM05D006272 ORTHO05D007989 1.7e-80 303.1 217 69.6
Haze_07447 Corylus avellana HOM05D006272 ORTHO05D007989 6.5e-80 301.2 221 69.7
FvH4_5g16490 Fragaria vesca HOM05D006272 ORTHO05D007989 7.9e-78 294.3 223 67.7
MD06G1180000 Malus domestica HOM05D006272 ORTHO05D007989 6.7e-77 291.2 224 66.5
Ciclev10022132m.g Citrus clementina HOM05D006272 ORTHO05D007989 1.5e-76 290.0 225 65.3
CiPaw.12G023800 Carya illinoinensis HOM05D006272 ORTHO05D007989 3.3e-76 288.9 220 67.3
MD14G1185400 Malus domestica HOM05D006272 ORTHO05D007989 5.7e-76 288.1 216 67.6
Prupe.5G178100 Prunus persica HOM05D006272 ORTHO05D007989 5.7e-76 288.1 226 67.3
Gohir.D03G150700 Gossypium hirsutum HOM05D006272 ORTHO05D007989 2.1e-75 286.2 189 76.2
Glyma.06G185200 Glycine max HOM05D006272 ORTHO05D007989 2.8e-75 285.8 227 66.5
RcHm_v2.0_Chr7g0179601 Rosa chinensis HOM05D006272 ORTHO05D007989 4.8e-75 285.0 224 65.6
Duzib205G0574 Durio zibethinus HOM05D006272 ORTHO05D007989 6.3e-75 284.6 185 75.7
MD06G1180300 Malus domestica HOM05D006272 ORTHO05D007989 1.1e-74 283.9 232 64.2
FAN18G3972 Fragaria x ananassa HOM05D006272 ORTHO05D007989 2.4e-74 282.7 242 62.4
Thecc.03G005700 Theobroma cacao HOM05D006272 ORTHO05D007989 4.1e-74 282.0 231 65.4
Gohir.A03G017300 Gossypium hirsutum HOM05D006272 ORTHO05D007989 6.9e-74 281.2 189 73.5
Atru.chr9.2416 Acer truncatum HOM05D006272 ORTHO05D007989 1.5e-73 280.0 229 62.4
Actinidia19083 Actinidia chinensis HOM05D006272 ORTHO05D007989 2.0e-73 279.6 172 77.3
ClCG06G016760 Citrullus lanatus HOM05D006272 ORTHO05D007989 2.6e-73 279.3 183 72.7
TPR.G15079 Trifolium pratense HOM05D006272 ORTHO05D007989 3.4e-73 278.9 226 62.8
Glyma.04G179400 Glycine max HOM05D006272 ORTHO05D007989 5.9e-73 278.1 223 63.7
Eucgr.B00343 Eucalyptus grandis HOM05D006272 ORTHO05D007989 7.6e-73 277.7 221 66.1
Medtr3g078320 Medicago truncatula HOM05D006272 ORTHO05D007989 7.6e-73 277.7 226 62.8
FAN04G2131 Fragaria x ananassa HOM05D006272 ORTHO05D007989 1.0e-72 277.3 204 69.1
FAN13G1305 Fragaria x ananassa HOM05D006272 ORTHO05D007989 1.0e-72 277.3 204 69.1
Gorai.003G157900 Gossypium raimondii HOM05D006272 ORTHO05D007989 1.3e-72 276.9 185 74.1
MSTRG.4383 Avicennia marina HOM05D006272 ORTHO05D007989 1.7e-72 276.6 231 63.2
Migut.D01790 Erythranthe guttata HOM05D006272 ORTHO05D007989 1.7e-72 276.6 176 72.2
Rhsim12G0162200 Rhododendron simsii HOM05D006272 ORTHO05D007989 1.7e-72 276.6 207 65.7
Lj1g0014498 Lotus japonicus HOM05D006272 ORTHO05D007989 2.2e-72 276.2 198 69.7
GSVIVG01007814001 Vitis vinifera HOM05D006272 ORTHO05D007989 2.9e-72 275.8 223 65.5
CAN.G2099.3 Capsicum annuum HOM05D006272 ORTHO05D007989 5.0e-72 275.0 169 76.3
vmacro16592 Vaccinium macrocarpon HOM05D006272 ORTHO05D007989 5.0e-72 275.0 173 75.1
Phvul.009G181400 Phaseolus vulgaris HOM05D006272 ORTHO05D007989 6.5e-72 274.6 224 63.4
CsaV3_1G001760 Cucumis sativus L. HOM05D006272 ORTHO05D007989 8.5e-72 274.2 172 76.2
CANSAT80G1784 Cannabis sativa HOM05D006272 ORTHO05D007989 1.1e-71 273.9 184 70.1
VMungo1309G0353 Vigna mungo HOM05D006272 ORTHO05D007989 1.4e-71 273.5 224 62.5
Psat5g113800 Pisum sativum HOM05D006272 ORTHO05D007989 2.5e-71 272.7 173 74.0
Sed0009129 Sechium edule HOM05D006272 ORTHO05D007989 4.2e-71 271.9 207 66.7
Sc12g0005560 Simmondsia chinensis HOM05D006272 ORTHO05D007989 4.2e-71 271.9 202 69.8
Lalb_Chr23g0273081 Lupinus albus HOM05D006272 ORTHO05D007989 5.5e-71 271.6 225 63.6
EL10Ac5g10820 Beta vulgaris HOM05D006272 ORTHO05D007989 7.2e-71 271.2 175 74.3
COL.COLO4_04328 Corchorus olitorius HOM05D006272 ORTHO05D007989 7.2e-71 271.2 184 71.7
Ca_16206_v3 Cicer arietinum L. HOM05D006272 ORTHO05D007989 2.7e-70 269.2 223 61.9
Thhalv10014644m.g Eutrema salsugineum HOM05D006272 ORTHO05D007989 2.7e-70 269.2 222 61.3
HanXRQChr16g0503601 Helianthus annuus HOM05D006272 ORTHO05D007989 3.6e-70 268.9 227 59.9
Cfa019077 Carpinus fangiana HOM05D006272 ORTHO05D007989 1.0e-69 267.3 202 66.3
ECA232G4277 Erigeron canadensis HOM05D006272 ORTHO05D007989 1.0e-69 267.3 205 62.0
Solyc03g113990.3 Solanum lycopersicum HOM05D006272 ORTHO05D007989 1.3e-69 266.9 199 66.8
PGSC0003DMG400024586 Solanum tuberosum HOM05D006272 ORTHO05D007989 2.3e-69 266.2 202 65.8
Aa31LG3G6090 Aethionema arabicum HOM05D006272 ORTHO05D007989 3.9e-69 265.4 216 62.0
BcaC04g20846 Brassica carinata HOM05D006272 ORTHO05D007989 3.9e-69 265.4 175 72.0
BolC9t56708H Brassica oleracea HOM05D006272 ORTHO05D007989 3.9e-69 265.4 175 72.0
CSS0043549 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 5.1e-69 265.0 186 68.3
Cc04_g13100 Coffea canephora HOM05D006272 ORTHO05D007989 5.1e-69 265.0 219 60.7
Sopen03g033040 Solanum pennellii HOM05D006272 ORTHO05D007989 8.7e-69 264.2 168 74.4
Carub.0008s1010 Capsella rubella HOM05D006272 ORTHO05D007989 1.1e-68 263.8 181 69.1
Oeu041583.1 Olea europaea HOM05D006272 ORTHO05D007989 1.1e-68 263.8 173 72.3
BraSC37t46149Z Brassica rapa HOM05D006272 ORTHO05D007989 1.5e-68 263.5 183 68.3
Nitab4.5_0006432g0010 Nicotiana tabacum HOM05D006272 ORTHO05D007989 1.5e-68 263.5 168 74.4
THA.LOC104809256 Tarenaya hassleriana HOM05D006272 ORTHO05D007989 1.5e-68 263.5 220 60.9
Ah.11g046120 Amaranthus hybridus HOM05D006272 ORTHO05D007989 2.5e-68 262.7 190 66.3
arahy.Tifrunner.gnm1.ann1.I0QXBL Arachis hypogaea HOM05D006272 ORTHO05D007989 5.7e-68 261.5 161 78.9
TAR622G0996 Trochodendron aralioides HOM05D006272 ORTHO05D007989 5.7e-68 261.5 215 62.8
AL8G24090 Arabidopsis lyrata HOM05D006272 ORTHO05D007989 9.7e-68 260.8 176 68.8
AT5G50100 Arabidopsis thaliana HOM05D006272 ORTHO05D007989 4.8e-67 258.5 197 62.9
BcaB08g35362 Brassica carinata HOM05D006272 ORTHO05D007989 8.2e-67 257.7 169 71.0
PGR083G1342 Punica granatum HOM05D006272 ORTHO05D007989 1.4e-66 256.9 221 62.0
CSS0019620 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 3.1e-66 255.8 173 71.1
AUR62031036 Chenopodium quinoa HOM05D006272 ORTHO05D007989 6.9e-66 254.6 183 67.8
AUR62008277 Chenopodium quinoa HOM05D006272 ORTHO05D007989 9.0e-66 254.2 178 66.9
C09p38510 Brassica napus HOM05D006272 ORTHO05D007989 1.5e-65 253.4 162 72.8
MELO3C017116.2 Cucumis melo HOM05D006272 ORTHO05D007989 4.5e-65 251.9 162 72.2
SGA_v2.0_scaffold114G31850 Striga asiatica HOM05D006272 ORTHO05D007989 5.9e-65 251.5 180 67.8
Sp6g11960 Schrenkiella parvula HOM05D006272 ORTHO05D007989 1.0e-64 250.8 224 58.9
A10p08550 Brassica napus HOM05D006272 ORTHO05D007989 1.7e-64 250.0 170 68.8
Lsat_1_v5_gn_4_72700 Lactuca sativa HOM05D006272 ORTHO05D007989 1.7e-64 250.0 203 59.6
Lj5A121G99 Lonicera japonica HOM05D006272 ORTHO05D007989 1.7e-64 250.0 188 64.4
Nn4g22890 Nelumbo nucifera HOM05D006272 ORTHO05D007524 1.7e-64 250.0 195 63.1
Aqoxy3G03085 Aquilegia oxysepala HOM05D006272 ORTHO05D007989 2.5e-63 246.1 178 66.3
FAN08G1485 Fragaria x ananassa HOM05D006272 ORTHO05D007989 3.2e-63 245.7 239 57.3
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 3.2e-63 245.7 179 67.6
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 7.2e-63 244.6 156 73.1
arahy.Tifrunner.gnm1.ann1.LZB4LR Arachis hypogaea HOM05D006272 ORTHO05D007989 7.9e-62 241.1 148 79.1
Os04g0668800 Oryza sativa ssp. japonica HOM05D006272 ORTHO05D007989 1.0e-61 240.7 143 76.9
Zm00001eb433220 Zea mays HOM05D006272 ORTHO05D007989 2.3e-61 239.6 144 75.7
PSO832G1007 Papaver somniferum HOM05D006272 ORTHO05D007989 3.0e-61 239.2 245 53.5
Aqoxy3G03086 Aquilegia oxysepala HOM05D006272 ORTHO05D007989 1.5e-60 236.9 178 65.2
Hund09410 Selenicereus undatus HOM05D006272 ORTHO05D007989 1.5e-60 236.9 151 76.2
Nitab4.5_0001422g0120 Nicotiana tabacum HOM05D006272 ORTHO05D007989 2.0e-60 236.5 141 79.4
PSO063G7353 Papaver somniferum HOM05D006272 ORTHO05D007989 4.4e-60 235.3 238 55.0
Peaxi162Scf00017g02427 Petunia axillaris HOM05D006272 ORTHO05D007989 3.7e-59 232.3 205 58.0
Cpa.g.c38966 Carica papaya HOM05D006272 ORTHO05D007989 4.8e-59 231.9 125 86.4
ATR1149G021 Amborella trichopoda HOM05D006272 ORTHO05D007989 1.8e-58 229.9 166 68.7
TWI15G0925 Tripterygium wilfordii HOM05D006272 ORTHO05D007989 1.5e-57 226.9 161 71.4
HPP92_028587 Vanilla planifolia HOM05D006272 ORTHO05D007989 1.5e-57 226.9 143 73.4
DCAR_021559 Daucus carota HOM05D006272 ORTHO05D007989 6.5e-56 221.5 145 71.0
Mapoly0071s0065 Marchantia polymorpha HOM05D006272 ORTHO05D007989 3.6e-54 215.7 164 60.4
CSS0030983 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 3.3e-52 209.1 139 74.8
MBI15_g12943_MAGBIO Magnolia biondii HOM05D006272 ORTHO05D007989 7.7e-49 198.0 189 56.1
CBR_g17090 Chara braunii HOM05D006272 ORTHO05D007989 1.0e-48 197.6 154 55.8
Pp3c1_15150 Physcomitrium patens HOM05D006272 ORTHO05D007989 1.3e-48 197.2 159 57.9
Sed0028033 Sechium edule HOM05D006272 ORTHO05D007989 4.2e-47 192.2 131 71.0
CARHR258530 Cardamine hirsuta HOM05D006272 ORTHO05D007989 1.7e-43 180.3 195 52.3
SMO134G0173 Selaginella moellendorffii HOM05D006272 ORTHO05D007989 4.8e-43 178.7 111 70.3
Hma1.2p1_1643F.1_g295250 Hydrangea macrophylla HOM05D006272 ORTHO05D007989 2.0e-36 156.8 156 57.7
Hma1.2p1_2351F.1_g320495 Hydrangea macrophylla HOM05D006272 ORTHO05D007989 2.0e-36 156.8 156 57.7
SalBow3G0460 Salvia bowleyana HOM05D006272 ORTHO05D007989 1.3e-35 154.1 93 76.3
AL8G10070 Arabidopsis lyrata HOM05D006272 ORTHO05D007989 2.8e-35 152.9 93 78.5
Cre03.g145587 Chlamydomonas reinhardtii HOM05D006272 ORTHO05D007989 2.4e-34 149.8 166 44.6
PRCOL_00006774 Prasinoderma coloniale HOM05D006272 ORTHO05D007989 8.5e-32 141.4 136 47.1
QL12p034838 Quercus lobata HOM05D006272 ORTHO05D007989 5.5e-31 138.7 75 88.0
Dinv09172 Davidia involucrata HOM05D006272 ORTHO05D007989 1.6e-30 137.1 136 55.9
MCO16G260 Micromonas commoda HOM05D006272 ORTHO05D007989 1.4e-29 134.0 128 43.8
Gohir.A03G017120 Gossypium hirsutum HOM05D006272 ORTHO05D007989 5.2e-29 132.1 110 60.0
Cpa.g.c35589.1 Carica papaya HOM05D006272 ORTHO05D007989 3.1e-26 122.9 138 50.0
SalBow3G4540 Salvia bowleyana HOM05D006272 ORTHO05D007989 5.0e-24 115.5 96 59.4
MBI15_g10564_MAGBIO Magnolia biondii HOM05D006272 ORTHO05D007989 3.6e-22 109.4 75 68.0
Cre02.g095077 Chlamydomonas reinhardtii HOM05D006272 ORTHO05D007989 7.8e-17 91.7 114 35.1
PRCOL_00004884 Prasinoderma coloniale HOM05D006272 ORTHO05D030206 2.7e-09 66.6 172 27.3
TPR.G22672 Trifolium pratense HOM05D006272 ORTHO05D007989 1.1e-07 61.2 44 61.4
vmacro22872 Vaccinium macrocarpon HOM05D006272 ORTHO05D007989 5.6e-07 58.9 36 75.0


User provided reference genes

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