Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra15G0074900 Salix brachista HOM05D026068 ORTHO05D036643 7.0e-167 590.5 291 100.0
Potri.015G054500 Populus trichocarpa HOM05D000497 ORTHO05D002300 2.8e-70 269.6 206 70.9
Manes.01G012200 Manihot esculenta HOM05D000497 ORTHO05D002300 4.3e-39 166.0 206 51.0
Potri.015G054425 Populus trichocarpa HOM05D026068 ORTHO05D036643 1.6e-30 137.5 88 79.5
Manes.05G120878 Manihot esculenta HOM05D000497 ORTHO05D002300 7.1e-26 122.1 208 38.9
TWI81G0827 Tripterygium wilfordii HOM05D000497 ORTHO05D002300 1.9e-15 87.4 192 37.0
MELO3C002085.2 Cucumis melo HOM05D000497 ORTHO05D002300 4.3e-15 86.3 213 31.5
Ciclev10020886m.g Citrus clementina HOM05D000497 ORTHO05D002300 7.4e-15 85.5 166 42.8
Sed0002522 Sechium edule HOM05D000497 ORTHO05D002300 1.6e-14 84.3 121 45.5
CsaV3_1G006600 Cucumis sativus L. HOM05D000497 ORTHO05D002300 2.8e-14 83.6 220 31.4
Manes.05G122804 Manihot esculenta HOM05D026068 ORTHO05D036643 3.7e-14 83.2 87 54.0
Sed0014784 Sechium edule HOM05D000497 ORTHO05D002300 6.2e-14 82.4 152 40.1
CSS0037642 Camellia sinensis var. sinensis HOM05D000497 ORTHO05D002300 8.1e-14 82.0 153 41.2
Rhsim08G0135200 Rhododendron simsii HOM05D000497 ORTHO05D002300 8.1e-14 82.0 184 40.2
CSS0005103 Camellia sinensis var. sinensis HOM05D000497 ORTHO05D002300 1.8e-13 80.9 153 39.9
Hma1.2p1_0592F.1_g185350 Hydrangea macrophylla HOM05D000497 ORTHO05D002300 3.1e-13 80.1 141 42.6
Hma1.2p1_0592F.1_g185360 Hydrangea macrophylla HOM05D000245 ORTHO05D002300 3.1e-13 80.1 141 42.6
Hma1.2p1_2942F.1_g330625 Hydrangea macrophylla HOM05D000245 ORTHO05D002300 3.1e-13 80.1 141 42.6
Dinv09800 Davidia involucrata HOM05D000497 ORTHO05D002300 4.0e-13 79.7 159 38.4
Atru.chr9.831 Acer truncatum HOM05D000497 ORTHO05D002300 9.0e-13 78.6 240 32.9
CiPaw.15G129900 Carya illinoinensis HOM05D000497 ORTHO05D002300 1.2e-12 78.2 117 44.4
QL10p025121 Quercus lobata HOM05D026053 ORTHO05D002300 2.6e-12 77.0 198 33.3
TAR622G1395 Trochodendron aralioides HOM05D000497 ORTHO05D002300 4.5e-12 76.3 211 32.2
Manes.01G012425 Manihot esculenta HOM05D026068 ORTHO05D250695 5.8e-12 75.9 92 51.1
Dinv28094 Davidia involucrata HOM05D000497 ORTHO05D002300 1.0e-11 75.1 154 38.3
MD14G1226300 Malus domestica HOM05D000497 ORTHO05D013080 8.4e-11 72.0 159 37.7
DCAR_011542 Daucus carota HOM05D000497 ORTHO05D002300 1.1e-10 71.6 83 51.8
TAR374G0492 Trochodendron aralioides HOM05D000497 ORTHO05D002300 1.1e-10 71.6 222 32.4
PGR044G1399 Punica granatum HOM05D000497 ORTHO05D002300 1.4e-10 71.2 204 35.3
Eucgr.B00720 Eucalyptus grandis HOM05D000497 ORTHO05D002300 1.9e-10 70.9 92 51.1
Thecc.03G034300 Theobroma cacao HOM05D000497 ORTHO05D002300 1.9e-10 70.9 137 39.4
RcHm_v2.0_Chr1g0360081 Rosa chinensis HOM05D000497 ORTHO05D013080 5.5e-10 69.3 153 34.6
Sc04g0006480 Simmondsia chinensis HOM05D000497 ORTHO05D002300 5.5e-10 69.3 212 28.3
Sc04g0006500 Simmondsia chinensis HOM05D000497 ORTHO05D002300 5.5e-10 69.3 212 28.3
TAR371G0755 Trochodendron aralioides HOM05D000497 ORTHO05D002300 7.1e-10 68.9 144 38.9
FAN03G0612 Fragaria x ananassa HOM05D007283 ORTHO05D013080 1.2e-09 68.2 72 52.8
PGSC0003DMG400005631 Solanum tuberosum HOM05D000497 ORTHO05D002300 1.2e-09 68.2 161 36.0
Solyc03g119580.1 Solanum lycopersicum HOM05D000497 ORTHO05D002300 1.6e-09 67.8 146 39.0
Sc11g0003310 Simmondsia chinensis HOM05D000497 ORTHO05D002300 2.1e-09 67.4 202 31.2
Sopen03g038410 Solanum pennellii HOM05D000497 ORTHO05D002300 2.7e-09 67.0 146 38.4
Duzib084G0085 Durio zibethinus HOM05D000497 ORTHO05D002300 3.5e-09 66.6 83 50.6
FAN01G3072 Fragaria x ananassa HOM05D007283 ORTHO05D013080 3.5e-09 66.6 72 51.4
FAN10G0450 Fragaria x ananassa HOM05D007283 ORTHO05D013080 3.5e-09 66.6 72 51.4
FAN10G4341 Fragaria x ananassa HOM05D007283 ORTHO05D013080 3.5e-09 66.6 72 51.4
AUR62035238 Chenopodium quinoa HOM05D000497 ORTHO05D002300 4.6e-09 66.2 208 30.3
Glyma.07G091100 Glycine max HOM05D016665 ORTHO05D017046 6.0e-09 65.9 122 38.5
QL01p043151 Quercus lobata HOM05D000497 ORTHO05D002300 7.9e-09 65.5 211 29.4
Prupe.5G220700 Prunus persica HOM05D000497 ORTHO05D013080 1.8e-08 64.3 162 34.0
Sc04g0003530 Simmondsia chinensis HOM05D000497 ORTHO05D002300 2.3e-08 63.9 214 30.8
Cfa002790 Carpinus fangiana HOM05D000245 ORTHO05D000020 3.0e-08 63.5 88 40.9
Haze_25087 Corylus avellana HOM05D000245 ORTHO05D000020 3.0e-08 63.5 88 39.8
Peaxi162Scf00015g00091 Petunia axillaris HOM05D000497 ORTHO05D002300 3.0e-08 63.5 130 38.5
MD06G1215500 Malus domestica HOM05D000497 ORTHO05D013080 3.9e-08 63.2 144 35.4
CAN.G438.135 Capsicum annuum HOM05D000497 ORTHO05D002300 5.1e-08 62.8 98 44.9
Cfa019784 Carpinus fangiana HOM05D000497 ORTHO05D002300 5.1e-08 62.8 86 45.3
FvH4_7g16860 Fragaria vesca HOM05D007283 ORTHO05D013080 5.1e-08 62.8 72 48.6
FAN06G1020 Fragaria x ananassa HOM05D007283 ORTHO05D013080 5.1e-08 62.8 72 48.6
FAN06G2603 Fragaria x ananassa HOM05D007283 ORTHO05D013080 5.1e-08 62.8 72 48.6
HanXRQChr17g0567481 Helianthus annuus HOM05D000497 ORTHO05D002300 5.1e-08 62.8 89 50.6
TAR371G0284 Trochodendron aralioides HOM05D000497 ORTHO05D002300 5.1e-08 62.8 144 36.8
MD13G1042600 Malus domestica HOM05D000497 ORTHO05D002300 6.7e-08 62.4 117 35.0
Aqoxy3G00313 Aquilegia oxysepala HOM05D000497 ORTHO05D002300 1.1e-07 61.6 208 27.4
PSO017G6631 Papaver somniferum HOM05D000245 ORTHO05D002300 1.5e-07 61.2 191 28.8
Dinv04472 Davidia involucrata HOM05D000497 ORTHO05D002300 1.9e-07 60.8 95 41.1
Lalb_Chr13g0296331 Lupinus albus HOM05D000245 ORTHO05D000020 1.9e-07 60.8 89 37.1
MELO3C012242.2 Cucumis melo HOM05D000497 ORTHO05D002300 2.5e-07 60.5 124 37.9
Lsat_1_v5_gn_4_17901 Lactuca sativa HOM05D000497 ORTHO05D002300 2.5e-07 60.5 115 38.3
QL10p025179 Quercus lobata HOM05D026053 ORTHO05D017046 2.5e-07 60.5 172 30.8
VMungo0720G1796 Vigna mungo HOM05D000497 ORTHO05D002300 2.5e-07 60.5 127 35.4
CiPaw.03G131300 Carya illinoinensis HOM05D000245 ORTHO05D000020 3.3e-07 60.1 85 38.8
Haze_18667 Corylus avellana HOM05D000497 ORTHO05D002300 3.3e-07 60.1 165 35.2
Lj6C759T21 Lonicera japonica HOM05D000497 ORTHO05D002300 3.3e-07 60.1 131 36.6
Phvul.004G157600 Phaseolus vulgaris HOM05D016665 ORTHO05D002300 3.3e-07 60.1 121 37.2
Haze_17476 Corylus avellana HOM05D000497 ORTHO05D002300 4.3e-07 59.7 190 31.1
Haze_18665 Corylus avellana HOM05D000497 ORTHO05D002300 4.3e-07 59.7 165 35.2
Dinv21092 Davidia involucrata HOM05D000497 ORTHO05D002300 4.3e-07 59.7 109 38.5
Dinv31642 Davidia involucrata HOM05D000497 ORTHO05D002300 4.3e-07 59.7 85 42.4
ECA234G0409 Erigeron canadensis HOM05D000497 ORTHO05D002300 4.3e-07 59.7 98 41.8
Manes.12G146000 Manihot esculenta HOM05D000245 ORTHO05D000020 4.3e-07 59.7 85 38.8
Manes.14G101900 Manihot esculenta HOM05D000497 ORTHO05D002300 4.3e-07 59.7 206 28.2
A05p34260 Brassica napus HOM05D000233 ORTHO05D000020 5.7e-07 59.3 93 41.9
BraA05t22246Z Brassica rapa HOM05D000233 ORTHO05D000020 5.7e-07 59.3 93 41.9
ClCG01G015830 Citrullus lanatus HOM05D000245 ORTHO05D000020 5.7e-07 59.3 163 31.3
Duzib187G1897 Durio zibethinus HOM05D000245 ORTHO05D000020 5.7e-07 59.3 85 38.8
ECA233G2743 Erigeron canadensis HOM05D000497 ORTHO05D002300 5.7e-07 59.3 136 33.8
Lsat_1_v5_gn_3_59401 Lactuca sativa HOM05D000497 ORTHO05D002300 5.7e-07 59.3 83 44.6
Prupe.6G165700 Prunus persica HOM05D000245 ORTHO05D000020 5.7e-07 59.3 85 38.8
VMungo0464G1504 Vigna mungo HOM05D016665 ORTHO05D017046 5.7e-07 59.3 126 35.7
DCAR_007241 Daucus carota HOM05D000497 ORTHO05D002300 7.4e-07 58.9 105 40.0
HanXRQChr16g0529281 Helianthus annuus HOM05D000497 ORTHO05D002300 7.4e-07 58.9 98 39.8
Lsat_1_v5_gn_5_186580 Lactuca sativa HOM05D000233 ORTHO05D000020 7.4e-07 58.9 85 42.4
GSVIVG01022277001 Vitis vinifera HOM05D000245 ORTHO05D000020 7.4e-07 58.9 88 36.4
MSTRG.2517 Avicennia marina HOM05D000245 ORTHO05D000020 9.6e-07 58.5 133 34.6
BcaB06g29545 Brassica carinata HOM05D000233 ORTHO05D000020 9.6e-07 58.5 81 46.9
C05p52020 Brassica napus HOM05D000233 ORTHO05D000020 9.6e-07 58.5 81 46.9
BolC5t33888H Brassica oleracea HOM05D000233 ORTHO05D000020 9.6e-07 58.5 81 46.9
Gohir.A02G137000 Gossypium hirsutum HOM05D000245 ORTHO05D000020 9.6e-07 58.5 85 36.5
Gohir.D10G105300 Gossypium hirsutum HOM05D000245 ORTHO05D000020 9.6e-07 58.5 86 39.5
Gorai.011G114900 Gossypium raimondii HOM05D000245 ORTHO05D000020 9.6e-07 58.5 86 39.5
Potri.005G087200 Populus trichocarpa HOM05D000245 ORTHO05D000020 9.6e-07 58.5 87 42.5
COL.COLO4_05976 Corchorus olitorius HOM05D000497 ORTHO05D002300 1.3e-06 58.2 215 28.4
CsaV3_5G034270 Cucumis sativus L. HOM05D000497 ORTHO05D002300 1.3e-06 58.2 124 37.9
Dinv19451 Davidia involucrata HOM05D000245 ORTHO05D000020 1.3e-06 58.2 85 38.8
Oeu027683.1 Olea europaea HOM05D000497 ORTHO05D002300 1.3e-06 58.2 89 42.7
Sed0001080 Sechium edule HOM05D000497 ORTHO05D002300 1.3e-06 58.2 90 37.8
SGA_v2.0_scaffold4782G54535 Striga asiatica HOM05D007283 ORTHO05D010540 1.3e-06 58.2 83 42.2
TWI79G1494 Tripterygium wilfordii HOM05D000497 ORTHO05D002300 1.3e-06 58.2 102 40.2
ClCG02G000900 Citrullus lanatus HOM05D000245 ORTHO05D000020 1.6e-06 57.8 116 36.2
HanXRQChr10g0303911 Helianthus annuus HOM05D000233 ORTHO05D000020 1.6e-06 57.8 80 38.8
Dinv21093 Davidia involucrata HOM05D000497 ORTHO05D002300 2.1e-06 57.4 95 40.0
FAN04G1687 Fragaria x ananassa HOM05D000497 ORTHO05D013080 2.1e-06 57.4 162 33.3
Lj8P330T15 Lonicera japonica HOM05D000497 ORTHO05D002300 2.1e-06 57.4 82 43.9
Peaxi162Scf00382g00052 Petunia axillaris HOM05D007283 ORTHO05D010540 2.1e-06 57.4 172 32.6
MSTRG.13529 Avicennia marina HOM05D007283 ORTHO05D010540 2.8e-06 57.0 80 43.8
BcaB04g20942 Brassica carinata HOM05D000233 ORTHO05D000020 2.8e-06 57.0 78 43.6
Gohir.D03G047700 Gossypium hirsutum HOM05D000245 ORTHO05D000020 2.8e-06 57.0 85 36.5
Gorai.003G048800 Gossypium raimondii HOM05D000245 ORTHO05D000020 2.8e-06 57.0 85 36.5
Nn5g28797 Nelumbo nucifera HOM05D000245 ORTHO05D000020 2.8e-06 57.0 87 36.8
SGA_v2.0_scaffold14G06859 Striga asiatica HOM05D000497 ORTHO05D010540 2.8e-06 57.0 95 41.1
Duzib264G1163 Durio zibethinus HOM05D000245 ORTHO05D000020 3.7e-06 56.6 101 35.6
Migut.E00337 Erythranthe guttata HOM05D007283 ORTHO05D010540 3.7e-06 56.6 53 54.7
FAN26G1747 Fragaria x ananassa HOM05D000245 ORTHO05D000020 3.7e-06 56.6 90 40.0
Hma1.2p1_0061F.1_g034010 Hydrangea macrophylla HOM05D000497 ORTHO05D002300 3.7e-06 56.6 89 40.4
Manes.02G013200 Manihot esculenta HOM05D000497 ORTHO05D000020 3.7e-06 56.6 138 35.5
Oeu039277.1 Olea europaea HOM05D007283 ORTHO05D010540 3.7e-06 56.6 53 54.7
Peaxi162Scf00031g00144 Petunia axillaris HOM05D000233 ORTHO05D000020 3.7e-06 56.6 82 43.9
QL09p011103 Quercus lobata HOM05D000497 ORTHO05D000020 3.7e-06 56.6 97 42.3
Solyc05g009250.1 Solanum lycopersicum HOM05D007283 ORTHO05D022165 3.7e-06 56.6 68 47.1
Sopen05g004980 Solanum pennellii HOM05D007283 ORTHO05D022165 3.7e-06 56.6 68 47.1
PGSC0003DMG400014570 Solanum tuberosum HOM05D007283 ORTHO05D022165 3.7e-06 56.6 68 47.1
Thecc.02G355700 Theobroma cacao HOM05D000497 ORTHO05D002300 3.7e-06 56.6 107 39.3
Aa31LG8G2410 Aethionema arabicum HOM05D000233 ORTHO05D000020 4.8e-06 56.2 81 42.0
Ah.04g166120 Amaranthus hybridus HOM05D000233 ORTHO05D000020 4.8e-06 56.2 54 51.9
CiPaw.16G064700 Carya illinoinensis HOM05D000497 ORTHO05D002300 4.8e-06 56.2 200 28.0
AUR62035237 Chenopodium quinoa HOM05D007283 ORTHO05D023380 4.8e-06 56.2 93 33.3
Ca_25450_v3 Cicer arietinum L. HOM05D000497 ORTHO05D002300 4.8e-06 56.2 60 53.3
FvH4_1g23350 Fragaria vesca HOM05D000245 ORTHO05D000020 4.8e-06 56.2 90 40.0
FAN19G1827 Fragaria x ananassa HOM05D000245 ORTHO05D000020 4.8e-06 56.2 90 40.0
FAN28G0633 Fragaria x ananassa HOM05D000245 ORTHO05D000020 4.8e-06 56.2 90 40.0
Medtr2g078680 Medicago truncatula HOM05D000233 ORTHO05D000020 4.8e-06 56.2 92 41.3
Oeu039272.1 Olea europaea HOM05D007283 ORTHO05D010540 4.8e-06 56.2 50 56.0
QL06p031298 Quercus lobata HOM05D000245 ORTHO05D000020 4.8e-06 56.2 87 37.9
Rhsim12G0083300 Rhododendron simsii HOM05D000497 ORTHO05D002300 4.8e-06 56.2 93 43.0
A03p39210 Brassica napus HOM05D000233 ORTHO05D000020 6.2e-06 55.8 81 44.4
C03p47580 Brassica napus HOM05D000233 ORTHO05D000020 6.2e-06 55.8 81 44.4
ClCG08G005320 Citrullus lanatus HOM05D000497 ORTHO05D002300 6.2e-06 55.8 57 49.1
Gohir.D12G170700 Gossypium hirsutum HOM05D000497 ORTHO05D002300 6.2e-06 55.8 106 37.7
Gohir.D12G253300 Gossypium hirsutum HOM05D000497 ORTHO05D000020 6.2e-06 55.8 197 34.5
Gorai.008G183300 Gossypium raimondii HOM05D000497 ORTHO05D002300 6.2e-06 55.8 106 37.7
Gorai.008G271200 Gossypium raimondii HOM05D000497 ORTHO05D000020 6.2e-06 55.8 197 34.5
Nitab4.5_0000874g0050 Nicotiana tabacum HOM05D007283 ORTHO05D010540 6.2e-06 55.8 116 37.9
PSO478G4044 Papaver somniferum HOM05D000245 ORTHO05D002300 6.2e-06 55.8 134 30.6
COL.COLO4_22374 Corchorus olitorius HOM05D000245 ORTHO05D000020 8.2e-06 55.5 106 34.0
Medtr8g023680 Medicago truncatula HOM05D000497 ORTHO05D002300 8.2e-06 55.5 131 34.4
Prupe.5G114100 Prunus persica HOM05D000497 ORTHO05D000020 8.2e-06 55.5 99 39.4
Rhsim09G0108500 Rhododendron simsii HOM05D000497 ORTHO05D002300 8.2e-06 55.5 88 39.8
RcHm_v2.0_Chr2g0118211 Rosa chinensis HOM05D000245 ORTHO05D000020 8.2e-06 55.5 89 38.2
RcHm_v2.0_Chr2g0118251 Rosa chinensis HOM05D000245 ORTHO05D000020 8.2e-06 55.5 89 38.2
Sc14g0007510 Simmondsia chinensis HOM05D000497 ORTHO05D002300 8.2e-06 55.5 99 35.4


User provided reference genes

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